data_NM7
#
_chem_comp.id NM7
_chem_comp.name 2-(carbamoylamino)-5-(4-fluorophenyl)thiophene-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H10 F N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-01-24
_chem_comp.pdbx_modified_date 2011-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 279.290
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NM7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3QFV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NM7 NAA NAA N 0 1 N N N N N N 11.003 -13.373 15.412 4.831 -2.151 -0.006 NAA NM7 1
NM7 NAB NAB N 0 1 N N N N N N 14.270 -8.120 14.991 1.865 3.630 0.000 NAB NM7 2
NM7 OAC OAC O 0 1 N N N N N N 10.474 -12.507 17.442 2.659 -2.613 -0.002 OAC NM7 3
NM7 OAD OAD O 0 1 N N N N N N 13.601 -10.204 14.489 3.567 2.201 -0.003 OAD NM7 4
NM7 FAE FAE F 0 1 N N N N N N 13.416 -6.042 23.562 -6.157 -0.401 -0.009 FAE NM7 5
NM7 CAF CAF C 0 1 Y N N N N N 13.386 -6.116 21.201 -4.002 -1.384 0.002 CAF NM7 6
NM7 CAG CAG C 0 1 Y N N N N N 13.033 -8.141 22.488 -4.252 1.006 0.002 CAG NM7 7
NM7 CAH CAH C 0 1 Y N N N N N 13.247 -6.858 20.041 -2.630 -1.246 0.003 CAH NM7 8
NM7 CAI CAI C 0 1 Y N N N N N 12.894 -8.873 21.303 -2.881 1.155 -0.002 CAI NM7 9
NM7 CAJ CAJ C 0 1 Y N N N N N 13.405 -8.602 17.689 0.060 1.354 0.003 CAJ NM7 10
NM7 NAK NAK N 0 1 N N N N N N 12.159 -11.639 16.224 3.218 -0.464 -0.003 NAK NM7 11
NM7 SAL SAL S 0 1 Y N N N N N 12.108 -10.464 18.693 0.561 -1.147 0.010 SAL NM7 12
NM7 CAM CAM C 0 1 N N N N N N 11.171 -12.508 16.414 3.537 -1.773 -0.004 CAM NM7 13
NM7 CAN CAN C 0 1 N N N N N N 13.716 -9.298 15.287 2.363 2.377 -0.001 CAN NM7 14
NM7 CAO CAO C 0 1 Y N N N N N 13.279 -6.764 22.428 -4.813 -0.261 -0.002 CAO NM7 15
NM7 CAP CAP C 0 1 Y N N N N N 12.984 -8.225 20.074 -2.059 0.027 0.002 CAP NM7 16
NM7 CAQ CAQ C 0 1 Y N N N N N 12.880 -8.941 18.877 -0.588 0.181 0.004 CAQ NM7 17
NM7 CAR CAR C 0 1 Y N N N N N 13.209 -9.494 16.708 1.452 1.227 0.000 CAR NM7 18
NM7 CAS CAS C 0 1 Y N N N N N 12.489 -10.634 17.068 1.888 -0.075 -0.001 CAS NM7 19
NM7 HNAA HNAA H 0 0 N N N N N N 10.285 -14.067 15.466 5.532 -1.481 -0.008 HNAA NM7 20
NM7 HNAB HNAB H 0 0 N N N N N N 11.595 -13.327 14.607 5.061 -3.093 -0.003 HNAB NM7 21
NM7 HNAC HNAC H 0 0 N N N N N N 14.617 -7.948 14.069 2.467 4.391 -0.001 HNAC NM7 22
NM7 HNAD HNAD H 0 0 N N N N N N 14.338 -7.409 15.691 0.906 3.771 0.002 HNAD NM7 23
NM7 HAF HAF H 0 1 N N N N N N 13.574 -5.054 21.155 -4.445 -2.369 -0.002 HAF NM7 24
NM7 HAG HAG H 0 1 N N N N N N 12.951 -8.636 23.444 -4.889 1.878 -0.001 HAG NM7 25
NM7 HAH HAH H 0 1 N N N N N N 13.345 -6.364 19.086 -1.998 -2.122 0.006 HAH NM7 26
NM7 HAI HAI H 0 1 N N N N N N 12.717 -9.938 21.342 -2.444 2.143 -0.007 HAI NM7 27
NM7 HAJ HAJ H 0 1 N N N N N N 13.945 -7.679 17.535 -0.445 2.308 -0.000 HAJ NM7 28
NM7 HNAK HNAK H 0 0 N N N N N N 12.702 -11.736 15.390 3.919 0.207 -0.004 HNAK NM7 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NM7 NAA CAM SING N N 1
NM7 NAA HNAA SING N N 2
NM7 NAA HNAB SING N N 3
NM7 NAB CAN SING N N 4
NM7 NAB HNAC SING N N 5
NM7 NAB HNAD SING N N 6
NM7 CAM OAC DOUB N N 7
NM7 OAD CAN DOUB N N 8
NM7 CAO FAE SING N N 9
NM7 CAH CAF DOUB Y N 10
NM7 CAF CAO SING Y N 11
NM7 CAF HAF SING N N 12
NM7 CAI CAG SING Y N 13
NM7 CAO CAG DOUB Y N 14
NM7 CAG HAG SING N N 15
NM7 CAH CAP SING Y N 16
NM7 CAH HAH SING N N 17
NM7 CAP CAI DOUB Y N 18
NM7 CAI HAI SING N N 19
NM7 CAR CAJ SING Y N 20
NM7 CAJ CAQ DOUB Y N 21
NM7 CAJ HAJ SING N N 22
NM7 NAK CAM SING N N 23
NM7 NAK CAS SING N N 24
NM7 NAK HNAK SING N N 25
NM7 CAS SAL SING Y N 26
NM7 SAL CAQ SING Y N 27
NM7 CAN CAR SING N N 28
NM7 CAQ CAP SING Y N 29
NM7 CAR CAS DOUB Y N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NM7 SMILES ACDLabs 12.01 O=C(Nc1sc(cc1C(=O)N)c2ccc(F)cc2)N
NM7 SMILES_CANONICAL CACTVS 3.370 NC(=O)Nc1sc(cc1C(N)=O)c2ccc(F)cc2
NM7 SMILES CACTVS 3.370 NC(=O)Nc1sc(cc1C(N)=O)c2ccc(F)cc2
NM7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1cc(ccc1c2cc(c(s2)NC(=O)N)C(=O)N)F
NM7 SMILES "OpenEye OEToolkits" 1.7.0 c1cc(ccc1c2cc(c(s2)NC(=O)N)C(=O)N)F
NM7 InChI InChI 1.03 InChI=1S/C12H10FN3O2S/c13-7-3-1-6(2-4-7)9-5-8(10(14)17)11(19-9)16-12(15)18/h1-5H,(H2,14,17)(H3,15,16,18)
NM7 InChIKey InChI 1.03 SAYGKHKXGCPTLX-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NM7 "SYSTEMATIC NAME" ACDLabs 12.01 2-(carbamoylamino)-5-(4-fluorophenyl)thiophene-3-carboxamide
NM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 2-(aminocarbonylamino)-5-(4-fluorophenyl)thiophene-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NM7 'Create component' 2011-01-24 RCSB
NM7 'Modify aromatic_flag' 2011-06-04 RCSB
NM7 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id NM7
_pdbe_chem_comp_drugbank_details.drugbank_id DB17058
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name TPCA-1
_pdbe_chem_comp_drugbank_details.description 'TPCA-1 is a selective inhibitor of human IκB kinase 2 (IKK-2).[A253152]'
_pdbe_chem_comp_drugbank_details.cas_number 507475-17-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
NM7 2-((aminocarbonyl)amino)-5-(4-fluorophenyl)-3-thiophenecarboxamide DrugBank ?
NM7 '3-thiophenecarboxamide, 2-((aminocarbonyl)amino)-5-(4-fluorophenyl)-' DrugBank ?
NM7 'Ikk 2 inhibitor iv' DrugBank ?
NM7 'Ikk-2 inhibitor iv' DrugBank ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NM7 NAA N 10.404 2.281 1
NM7 NAB N 5.649 5.178 2
NM7 OAC O 10.675 4.864 3
NM7 OAD O 3.547 3.651 4
NM7 FAE F 6.670 -5.714 5
NM7 CAF C 5.371 -3.464 6
NM7 CAG C 7.969 -3.464 7
NM7 CAH C 5.371 -1.964 8
NM7 CAI C 7.969 -1.964 9
NM7 CAJ C 5.457 1.168 10
NM7 NAK N 8.302 3.808 11
NM7 SAL S 7.884 1.168 12
NM7 CAM C 9.793 3.651 13
NM7 CAN C 5.038 3.808 14
NM7 CAO C 6.670 -4.214 15
NM7 CAP C 6.670 -1.214 16
NM7 CAQ C 6.670 0.286 17
NM7 CAR C 5.920 2.594 18
NM7 CAS C 7.420 2.594 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NM7 NAA CAM SINGLE NONE 1
NM7 NAB CAN SINGLE NONE 2
NM7 CAM OAC DOUBLE NONE 3
NM7 OAD CAN DOUBLE NONE 4
NM7 CAO FAE SINGLE NONE 5
NM7 CAH CAF DOUBLE NONE 6
NM7 CAF CAO SINGLE NONE 7
NM7 CAI CAG SINGLE NONE 8
NM7 CAO CAG DOUBLE NONE 9
NM7 CAH CAP SINGLE NONE 10
NM7 CAP CAI DOUBLE NONE 11
NM7 CAR CAJ SINGLE NONE 12
NM7 CAJ CAQ DOUBLE NONE 13
NM7 NAK CAM SINGLE NONE 14
NM7 NAK CAS SINGLE NONE 15
NM7 CAS SAL SINGLE NONE 16
NM7 SAL CAQ SINGLE NONE 17
NM7 CAN CAR SINGLE NONE 18
NM7 CAQ CAP SINGLE NONE 19
NM7 CAR CAS DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NM7 MurckoScaffold S1 scaffold c1ccc(-c2cccs2)cc1 InChI=1S/C10H8S/c1-2-5-9(6-3-1)10-7-4-8-11-10/h1-8H PJRGDKFLFAYRBV-UHFFFAOYSA-N
NM7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NM7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NM7 thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NM7 CAF S1 1
NM7 CAG S1 1
NM7 CAH S1 1
NM7 CAI S1 1
NM7 CAJ S1 1
NM7 SAL S1 1
NM7 CAO S1 1
NM7 CAP S1 1
NM7 CAQ S1 1
NM7 CAR S1 1
NM7 CAS S1 1
NM7 NAB F1 1
NM7 CAN F1 1
NM7 OAD F1 1
NM7 CAR F1 1
NM7 CAF F2 1
NM7 CAH F2 1
NM7 CAP F2 1
NM7 CAI F2 1
NM7 CAG F2 1
NM7 CAO F2 1
NM7 CAQ F3 1
NM7 CAJ F3 1
NM7 CAR F3 1
NM7 CAS F3 1
NM7 SAL F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NM7
_pdbe_chem_comp_rdkit_properties.exactmw 279.048
_pdbe_chem_comp_rdkit_properties.amw 279.296
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 125.917
_pdbe_chem_comp_rdkit_properties.tpsa 98.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.328
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.025
_pdbe_chem_comp_rdkit_properties.chi0v 9.761
_pdbe_chem_comp_rdkit_properties.chi1v 5.466
_pdbe_chem_comp_rdkit_properties.chi2v 2.883
_pdbe_chem_comp_rdkit_properties.chi3v 2.883
_pdbe_chem_comp_rdkit_properties.chi4v 2.090
_pdbe_chem_comp_rdkit_properties.chi0n 18.944
_pdbe_chem_comp_rdkit_properties.chi1n 9.386
_pdbe_chem_comp_rdkit_properties.chi2n 1.884
_pdbe_chem_comp_rdkit_properties.chi3n 1.884
_pdbe_chem_comp_rdkit_properties.chi4n 1.175
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.410
_pdbe_chem_comp_rdkit_properties.kappa1 5.297
_pdbe_chem_comp_rdkit_properties.kappa2 5.068
_pdbe_chem_comp_rdkit_properties.kappa3 2.885
_pdbe_chem_comp_rdkit_properties.Phi 1.413
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NM7 UniChem DrugBank DB17058
NM7 UniChem 'Guide to Pharmacology' 5986
NM7 UniChem ChEBI 91403
NM7 UniChem ZINC ZINC000003960707
NM7 UniChem fdasrs 9M632G86CC
NM7 UniChem Selleck tpca-1
NM7 UniChem LINCS LSM-1136
NM7 UniChem Nikkaji J2.819.229K
NM7 UniChem 'EPA CompTox Dashboard' DTXSID50432635
NM7 UniChem BRENDA 172144
NM7 UniChem BRENDA 256712
NM7 UniChem ChemicalBook CB41073580
NM7 UniChem MedChemExpress HY-10074
NM7 UniChem 'Probes And Drugs' PD002651
NM7 UniChem BindingDb 50230828
NM7 UniChem eMolecules 17281202
NM7 UniChem SureChEMBL SCHEMBL717369
NM7 UniChem 'PubChem TPHARMA' 14872956
NM7 UniChem PubChem 9903786
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NM7 NAA 4.799 -1.374 2.446 ETKDGv3 1
NM7 NAB 2.087 2.228 -2.416 ETKDGv3 2
NM7 OAC 2.579 -1.129 3.078 ETKDGv3 3
NM7 OAD 3.379 2.167 -0.491 ETKDGv3 4
NM7 FAE -6.350 -0.919 -0.402 ETKDGv3 5
NM7 CAF -4.302 -0.006 -1.393 ETKDGv3 6
NM7 CAG -4.331 -1.182 0.739 ETKDGv3 7
NM7 CAH -2.980 0.192 -1.313 ETKDGv3 8
NM7 CAI -2.871 -0.968 0.833 ETKDGv3 9
NM7 CAJ -0.031 0.796 -0.738 ETKDGv3 10
NM7 NAK 3.126 -0.343 0.938 ETKDGv3 11
NM7 SAL 0.344 -0.966 1.072 ETKDGv3 12
NM7 CAM 3.456 -0.963 2.189 ETKDGv3 13
NM7 CAN 2.354 1.753 -1.095 ETKDGv3 14
NM7 CAO -5.011 -0.723 -0.316 ETKDGv3 15
NM7 CAP -2.211 -0.305 -0.137 ETKDGv3 16
NM7 CAQ -0.745 -0.091 -0.035 ETKDGv3 17
NM7 CAR 1.424 0.813 -0.429 ETKDGv3 18
NM7 CAS 1.777 -0.063 0.526 ETKDGv3 19
NM7 HNAA 5.543 -1.239 1.726 ETKDGv3 20
NM7 HNAB 5.050 -1.816 3.358 ETKDGv3 21
NM7 HNAC 2.724 2.927 -2.859 ETKDGv3 22
NM7 HNAD 1.292 1.852 -2.978 ETKDGv3 23
NM7 HAF -4.853 0.354 -2.253 ETKDGv3 24
NM7 HAG -4.846 -1.711 1.531 ETKDGv3 25
NM7 HAH -2.482 0.701 -2.127 ETKDGv3 26
NM7 HAI -2.355 -1.345 1.706 ETKDGv3 27
NM7 HAJ -0.475 1.480 -1.446 ETKDGv3 28
NM7 HNAK 3.911 -0.122 0.287 ETKDGv3 29
#