data_NCS
#
_chem_comp.id NCS
_chem_comp.name
"SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H36 N O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 662.660
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NCS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2NEO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NCS C1 C1 C 0 1 Y N N N N N 4.113 -5.244 -8.972 0.921 -0.291 0.463 C1 NCS 1
NCS C2 C2 C 0 1 Y N N N N N 5.168 -5.245 -8.114 0.740 -1.562 0.975 C2 NCS 2
NCS C3 C3 C 0 1 Y N N N N N 6.304 -4.602 -8.494 -0.489 -2.208 0.834 C3 NCS 3
NCS C4 C4 C 0 1 Y N N N N N 6.354 -3.972 -9.755 -1.516 -1.568 0.136 C4 NCS 4
NCS C5 C5 C 0 1 Y N N N N N 5.303 -3.972 -10.619 -1.319 -0.318 -0.400 C5 NCS 5
NCS C6 C6 C 0 1 Y N N N N N 4.165 -4.606 -10.229 -0.095 0.320 -0.251 C6 NCS 6
NCS C7 C7 C 0 1 N N N N N N 7.580 -4.413 -7.837 -0.974 -3.521 1.297 C7 NCS 7
NCS C8 C8 C 0 1 N N N N N N 8.351 -3.664 -8.734 -2.226 -3.724 0.927 C8 NCS 8
NCS C9 C9 C 0 1 N N R N N N 7.648 -3.332 -10.029 -2.694 -2.511 0.157 C9 NCS 9
NCS O9 O9 O 0 1 N N N N N N 8.308 -4.002 -11.073 -3.804 -1.902 0.820 O9 NCS 10
NCS C10 C10 C 0 1 N N R N N N 2.879 -4.782 -10.919 0.351 1.685 -0.738 C10 NCS 11
NCS C11 C11 C 0 1 N N R N N N 2.227 -5.940 -10.163 1.655 1.992 0.048 C11 NCS 12
NCS C12 C12 C 0 1 N N R N N N 2.815 -5.899 -8.752 2.143 0.602 0.480 C12 NCS 13
NCS C13 C13 C 0 1 N N R N N N 7.537 -1.827 -10.278 -3.081 -2.907 -1.270 C13 NCS 14
NCS O14 O14 O 0 1 N N N N N N 8.797 -1.221 -10.114 -3.576 -1.750 -2.005 O14 NCS 15
NCS C15 C15 C 0 1 N N N N N N 8.738 -0.269 -9.154 -4.846 -1.977 -2.371 C15 NCS 16
NCS O15 O15 O 0 1 N N N N N N 9.688 0.422 -8.808 -5.507 -1.174 -2.998 O15 NCS 17
NCS O16 O16 O 0 1 N N N N N N 7.495 -0.180 -8.624 -5.316 -3.167 -1.984 O16 NCS 18
NCS C17 C17 C 0 1 N N N N N N 6.658 -1.129 -9.240 -4.275 -3.881 -1.256 C17 NCS 19
NCS O18 O18 O 0 1 N N N N N N 2.599 -7.083 -10.896 1.254 2.780 1.204 O18 NCS 20
NCS C19 C19 C 0 1 N N N N N N 2.919 -6.780 -12.176 0.186 3.528 0.860 C19 NCS 21
NCS O19 O19 O 0 1 N N N N N N 3.167 -7.595 -13.057 -0.075 4.629 1.283 O19 NCS 22
NCS C20 C20 C 0 1 N N S N N N 2.961 -5.263 -12.368 -0.624 2.750 -0.145 C20 NCS 23
NCS C21 C21 C 0 1 N N N N N N 1.677 -4.760 -13.032 -0.997 3.678 -1.271 C21 NCS 24
NCS O21 O21 O 0 1 N N N N N N 0.622 -5.336 -12.793 -0.142 4.279 -1.890 O21 NCS 25
NCS C22 C22 C 0 1 N N N N N N 1.757 -3.517 -13.794 -2.362 3.834 -1.590 C22 NCS 26
NCS C23 C23 C 0 1 N N N N N N 2.960 -2.884 -14.052 -3.329 3.175 -0.920 C23 NCS 27
NCS C24 C24 C 0 1 Y N N N N N 4.149 -3.600 -13.847 -3.046 2.254 0.182 C24 NCS 28
NCS C25 C25 C 0 1 Y N N N N N 4.205 -4.797 -13.086 -1.721 2.027 0.586 C25 NCS 29
NCS C26 C26 C 0 1 Y N N N N N 5.416 -5.498 -12.982 -1.448 1.165 1.618 C26 NCS 30
NCS C27 C27 C 0 1 Y N N N N N 6.528 -5.012 -13.645 -2.490 0.511 2.270 C27 NCS 31
NCS O27 O27 O 0 1 N N N N N N 7.724 -5.695 -13.569 -2.221 -0.342 3.291 O27 NCS 32
NCS C28 C28 C 0 1 Y N N N N N 6.467 -3.845 -14.385 -3.806 0.728 1.876 C28 NCS 33
NCS C29 C29 C 0 1 Y N N N N N 5.297 -3.116 -14.493 -4.089 1.591 0.842 C29 NCS 34
NCS C30 C30 C 0 1 N N N N N N 5.290 -1.841 -15.302 -5.517 1.822 0.420 C30 NCS 35
NCS C31 C31 C 0 1 N N N N N N 7.653 -6.825 -14.404 -0.817 -0.255 3.541 C31 NCS 36
NCS "O1'" O1* O 0 1 N N N N N N 1.993 -5.072 -7.965 3.121 0.115 -0.441 "O1'" NCS 37
NCS "C1'" C1* C 0 1 N N R N N N 0.928 -5.765 -7.360 4.399 0.331 0.163 "C1'" NCS 38
NCS "C2'" C2* C 0 1 N N R N N N 0.235 -4.809 -6.388 5.495 0.097 -0.880 "C2'" NCS 39
NCS "N2'" N2* N 1 1 N N N N N N -0.270 -3.609 -7.043 5.330 1.048 -1.987 "N2'" NCS 40
NCS C2M C2M C 0 1 N N N N N N -0.608 -3.899 -8.432 5.553 2.414 -1.497 C2M NCS 41
NCS "C3'" C3* C 0 1 N N R N N N 1.241 -4.459 -5.291 5.382 -1.336 -1.413 "C3'" NCS 42
NCS "O3'" O3* O 0 1 N N N N N N 0.661 -3.565 -4.375 6.488 -1.615 -2.274 "O3'" NCS 43
NCS "C4'" C4* C 0 1 N N R N N N 1.695 -5.752 -4.613 5.395 -2.304 -0.224 "C4'" NCS 44
NCS "O4'" O4* O 0 1 N N N N N N 0.591 -6.462 -4.111 6.671 -2.256 0.418 "O4'" NCS 45
NCS "C5'" C5* C 0 1 N N R N N N 2.414 -6.538 -5.710 4.305 -1.890 0.767 "C5'" NCS 46
NCS C5M C5M C 0 1 N N N N N N 3.062 -7.809 -5.162 4.288 -2.869 1.943 C5M NCS 47
NCS "O5'" O5* O 0 1 N N N N N N 1.456 -6.880 -6.682 4.567 -0.574 1.252 "O5'" NCS 48
NCS H2 H2 H 0 1 N N N N N N 5.088 -5.733 -7.153 1.543 -2.046 1.510 H2 NCS 49
NCS H5 H5 H 0 1 N N N N N N 5.374 -3.476 -11.575 -2.118 0.169 -0.938 H5 NCS 50
NCS H7 H7 H 0 1 N N N N N N 7.876 -4.769 -6.861 -0.382 -4.225 1.864 H7 NCS 51
NCS H8 H8 H 0 1 N N N N N N 9.367 -3.351 -8.545 -2.814 -4.604 1.139 H8 NCS 52
NCS HO9 HO9 H 0 1 N N N N N N 8.576 -4.842 -10.726 -3.534 -1.751 1.736 HO9 NCS 53
NCS H10 H10 H 0 1 N N N N N N 2.258 -3.896 -10.784 0.446 1.744 -1.822 H10 NCS 54
NCS H11 H11 H 0 1 N N N N N N 1.148 -5.788 -10.128 2.392 2.512 -0.564 H11 NCS 55
NCS H12 H12 H 0 1 N N N N N N 2.954 -6.875 -8.287 2.562 0.646 1.485 H12 NCS 56
NCS H13 H13 H 0 1 N N N N N N 7.130 -1.652 -11.274 -2.230 -3.352 -1.786 H13 NCS 57
NCS H171 1H17 H 0 0 N N N N N N 5.824 -0.644 -9.748 -4.017 -4.808 -1.768 H171 NCS 58
NCS H172 2H17 H 0 0 N N N N N N 6.276 -1.830 -8.498 -4.592 -4.082 -0.233 H172 NCS 59
NCS H22 H22 H 0 1 N N N N N N 0.852 -3.108 -14.219 -2.640 4.500 -2.394 H22 NCS 60
NCS H23 H23 H 0 1 N N N N N N 2.968 -1.942 -14.580 -4.358 3.335 -1.208 H23 NCS 61
NCS H26 H26 H 0 1 N N N N N N 5.478 -6.410 -12.406 -0.427 0.995 1.925 H26 NCS 62
NCS H28 H28 H 0 1 N N N N N N 7.356 -3.496 -14.891 -4.611 0.218 2.385 H28 NCS 63
NCS H301 1H30 H 0 0 N N N N N N 6.271 -1.392 -15.272 -5.790 1.101 -0.349 H301 NCS 64
NCS H302 2H30 H 0 0 N N N N N N 5.030 -2.068 -16.326 -6.175 1.701 1.282 H302 NCS 65
NCS H303 3H30 H 0 0 N N N N N N 4.573 -1.144 -14.893 -5.620 2.833 0.024 H303 NCS 66
NCS H311 1H31 H 0 0 N N N N N N 8.602 -7.361 -14.392 -0.573 0.742 3.907 H311 NCS 67
NCS H312 2H31 H 0 0 N N N N N N 6.867 -7.500 -14.067 -0.535 -0.996 4.290 H312 NCS 68
NCS H313 3H31 H 0 0 N N N N N N 7.437 -6.527 -15.430 -0.271 -0.447 2.618 H313 NCS 69
NCS "H1'" H1* H 0 1 N N N N N N 0.214 -6.093 -8.115 4.458 1.355 0.530 "H1'" NCS 70
NCS "H2'" H2* H 0 1 N N N N N N -0.621 -5.331 -5.962 6.472 0.239 -0.419 "H2'" NCS 71
NCS HN21 1HN2 H 0 0 N N N N N N -1.117 -3.269 -6.545 4.396 0.972 -2.360 HN21 NCS 72
NCS HN22 2HN2 H 0 0 N N N N N N 0.458 -2.867 -7.021 6.000 0.838 -2.713 HN22 NCS 73
NCS HM21 1HM2 H 0 0 N N N N N N 0.307 -4.079 -8.997 5.431 3.120 -2.318 HM21 NCS 74
NCS HM22 2HM2 H 0 0 N N N N N N -1.137 -3.050 -8.866 4.830 2.641 -0.713 HM22 NCS 75
NCS HM23 3HM2 H 0 0 N N N N N N -1.238 -4.787 -8.477 6.562 2.496 -1.094 HM23 NCS 76
NCS "H3'" H3* H 0 1 N N N N N N 2.131 -3.993 -5.715 4.450 -1.448 -1.966 "H3'" NCS 77
NCS "HO3'" *HO3 H 0 0 N N N N N N 0.659 -2.714 -4.793 6.377 -2.524 -2.586 "HO3'" NCS 78
NCS "H4'" H4* H 0 1 N N N N N N 2.380 -5.544 -3.791 5.201 -3.317 -0.577 "H4'" NCS 79
NCS "HO4'" *HO4 H 0 0 N N N N N N 0.150 -5.881 -3.505 6.635 -2.878 1.157 "HO4'" NCS 80
NCS "H5'" H5* H 0 1 N N N N N N 3.193 -5.902 -6.131 3.336 -1.906 0.268 "H5'" NCS 81
NCS HM51 1HM5 H 0 0 N N N N N N 3.626 -8.312 -5.948 5.214 -2.773 2.509 HM51 NCS 82
NCS HM52 2HM5 H 0 0 N N N N N N 2.298 -8.490 -4.785 3.440 -2.645 2.590 HM52 NCS 83
NCS HM53 3HM5 H 0 0 N N N N N N 3.744 -7.562 -4.349 4.197 -3.888 1.565 HM53 NCS 84
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NCS C1 C2 DOUB Y N 1
NCS C1 C6 SING Y N 2
NCS C1 C12 SING N N 3
NCS C2 C3 SING Y N 4
NCS C2 H2 SING N N 5
NCS C3 C4 DOUB Y N 6
NCS C3 C7 SING N N 7
NCS C4 C5 SING Y N 8
NCS C4 C9 SING N N 9
NCS C5 C6 DOUB Y N 10
NCS C5 H5 SING N N 11
NCS C6 C10 SING N N 12
NCS C7 C8 DOUB N N 13
NCS C7 H7 SING N N 14
NCS C8 C9 SING N N 15
NCS C8 H8 SING N N 16
NCS C9 O9 SING N N 17
NCS C9 C13 SING N N 18
NCS O9 HO9 SING N N 19
NCS C10 C11 SING N N 20
NCS C10 C20 SING N N 21
NCS C10 H10 SING N N 22
NCS C11 C12 SING N N 23
NCS C11 O18 SING N N 24
NCS C11 H11 SING N N 25
NCS C12 "O1'" SING N N 26
NCS C12 H12 SING N N 27
NCS C13 O14 SING N N 28
NCS C13 C17 SING N N 29
NCS C13 H13 SING N N 30
NCS O14 C15 SING N N 31
NCS C15 O15 DOUB N N 32
NCS C15 O16 SING N N 33
NCS O16 C17 SING N N 34
NCS C17 H171 SING N N 35
NCS C17 H172 SING N N 36
NCS O18 C19 SING N N 37
NCS C19 O19 DOUB N N 38
NCS C19 C20 SING N N 39
NCS C20 C21 SING N N 40
NCS C20 C25 SING N N 41
NCS C21 O21 DOUB N N 42
NCS C21 C22 SING N N 43
NCS C22 C23 DOUB N N 44
NCS C22 H22 SING N N 45
NCS C23 C24 SING N N 46
NCS C23 H23 SING N N 47
NCS C24 C25 DOUB Y N 48
NCS C24 C29 SING Y N 49
NCS C25 C26 SING Y N 50
NCS C26 C27 DOUB Y N 51
NCS C26 H26 SING N N 52
NCS C27 O27 SING N N 53
NCS C27 C28 SING Y N 54
NCS O27 C31 SING N N 55
NCS C28 C29 DOUB Y N 56
NCS C28 H28 SING N N 57
NCS C29 C30 SING N N 58
NCS C30 H301 SING N N 59
NCS C30 H302 SING N N 60
NCS C30 H303 SING N N 61
NCS C31 H311 SING N N 62
NCS C31 H312 SING N N 63
NCS C31 H313 SING N N 64
NCS "O1'" "C1'" SING N N 65
NCS "C1'" "C2'" SING N N 66
NCS "C1'" "O5'" SING N N 67
NCS "C1'" "H1'" SING N N 68
NCS "C2'" "N2'" SING N N 69
NCS "C2'" "C3'" SING N N 70
NCS "C2'" "H2'" SING N N 71
NCS "N2'" C2M SING N N 72
NCS "N2'" HN21 SING N N 73
NCS "N2'" HN22 SING N N 74
NCS C2M HM21 SING N N 75
NCS C2M HM22 SING N N 76
NCS C2M HM23 SING N N 77
NCS "C3'" "O3'" SING N N 78
NCS "C3'" "C4'" SING N N 79
NCS "C3'" "H3'" SING N N 80
NCS "O3'" "HO3'" SING N N 81
NCS "C4'" "O4'" SING N N 82
NCS "C4'" "C5'" SING N N 83
NCS "C4'" "H4'" SING N N 84
NCS "O4'" "HO4'" SING N N 85
NCS "C5'" C5M SING N N 86
NCS "C5'" "O5'" SING N N 87
NCS "C5'" "H5'" SING N N 88
NCS C5M HM51 SING N N 89
NCS C5M HM52 SING N N 90
NCS C5M HM53 SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NCS SMILES ACDLabs 10.04 O=C1OCC(O1)C3(O)c2cc7c(cc2C=C3)C(OC4OC(C(O)C(O)C4[NH2+]C)C)C8OC(=O)C6(c5cc(OC)cc(c5C=CC6=O)C)C78
NCS SMILES_CANONICAL CACTVS 3.341 C[NH2+][C@@H]1[C@@H](O)[C@@H](O)[C@@H](C)O[C@@H]1O[C@H]2[C@@H]3OC(=O)[C@]4([C@@H]3c5cc6c(C=C[C@]6(O)[C@H]7COC(=O)O7)cc25)C(=O)C=Cc8c(C)cc(OC)cc48
NCS SMILES CACTVS 3.341 C[NH2+][CH]1[CH](O)[CH](O)[CH](C)O[CH]1O[CH]2[CH]3OC(=O)[C]4([CH]3c5cc6c(C=C[C]6(O)[CH]7COC(=O)O7)cc25)C(=O)C=Cc8c(C)cc(OC)cc48
NCS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1cc(cc2c1C=CC(=O)[C@]23[C@@H]4c5cc6c(cc5[C@H]([C@@H]4OC3=O)O[C@@H]7[C@@H]([C@H]([C@H]([C@H](O7)C)O)O)[NH2+]C)C=C[C@@]6([C@H]8COC(=O)O8)O)OC
NCS SMILES "OpenEye OEToolkits" 1.5.0 Cc1cc(cc2c1C=CC(=O)C23C4c5cc6c(cc5C(C4OC3=O)OC7C(C(C(C(O7)C)O)O)[NH2+]C)C=CC6(C8COC(=O)O8)O)OC
NCS InChI InChI 1.03 InChI=1S/C35H35NO12/c1-14-9-17(43-4)11-22-18(14)5-6-23(37)35(22)25-19-12-21-16(7-8-34(21,42)24-13-44-33(41)46-24)10-20(19)29(30(25)48-32(35)40)47-31-26(36-3)28(39)27(38)15(2)45-31/h5-12,15,24-31,36,38-39,42H,13H2,1-4H3/p+1/t15-,24-,25-,26-,27+,28-,29-,30-,31-,34-,35+/m1/s1
NCS InChIKey InChI 1.03 OBDNPHCYNBAIOJ-KDIFMUJMSA-O
#
_pdbx_chem_comp_identifier.comp_id NCS
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"(3S,3aS,5R,9R,9aR)-5-hydroxy-7'-methoxy-5'-methyl-2,2'-dioxo-5-[(4R)-2-oxo-1,3-dioxolan-4-yl]-3a,5,9,9a-tetrahydro-2'H-spiro[s-indaceno[2,1-b]furan-3,1'-naphthalen]-9-yl 2,6-dideoxy-2-(methylammonio)-alpha-D-galactopyranoside"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NCS 'Create component' 1999-07-08 RCSB
NCS 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NCS C1 C 12.756 0.237 1
NCS C2 C 14.269 -0.113 2
NCS C3 C 15.320 1.030 3
NCS C4 C 14.844 2.509 4
NCS C5 C 13.323 2.824 5
NCS C6 C 12.299 1.657 6
NCS C7 C 16.864 1.030 7
NCS C8 C 17.344 2.498 8
NCS C9 C 16.098 3.410 9
NCS O9 O 15.222 4.627 10
NCS C10 C 10.808 1.663 11
NCS C11 C 10.342 0.237 12
NCS C12 C 11.549 -0.638 13
NCS C13 C 16.985 4.620 14
NCS O14 O 18.485 4.613 15
NCS C15 C 18.955 6.038 16
NCS O15 O 20.383 6.495 17
NCS O16 O 17.745 6.925 18
NCS C17 C 16.528 6.048 19
NCS O18 O 8.842 0.240 20
NCS C19 C 8.381 1.667 21
NCS O19 O 7.264 0.665 22
NCS C20 C 9.596 2.547 23
NCS C21 C 10.896 3.294 24
NCS O21 O 12.396 3.292 25
NCS C22 C 10.899 4.794 26
NCS C23 C 9.601 5.547 27
NCS C24 C 8.301 4.799 28
NCS C25 C 8.298 3.299 29
NCS C26 C 6.956 2.499 30
NCS C27 C 5.598 3.272 31
NCS O27 O 4.301 2.520 32
NCS C28 C 5.601 4.835 33
NCS C29 C 6.961 5.603 34
NCS C30 C 6.981 7.103 35
NCS C31 C 3.000 3.267 36
NCS "O1'" O 11.549 -2.138 37
NCS "C1'" C 10.250 -2.888 38
NCS "C2'" C 10.250 -4.388 39
NCS "N2'" N 11.549 -5.138 40
NCS C2M C 12.848 -5.888 41
NCS "C3'" C 8.951 -5.138 42
NCS "O3'" O 8.951 -6.638 43
NCS "C4'" C 7.652 -4.388 44
NCS "O4'" O 6.353 -5.138 45
NCS "C5'" C 7.652 -2.888 46
NCS C5M C 6.353 -2.138 47
NCS "O5'" O 8.951 -2.138 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NCS C1 C2 DOUBLE NONE 1
NCS C1 C6 SINGLE NONE 2
NCS C1 C12 SINGLE NONE 3
NCS C2 C3 SINGLE NONE 4
NCS C3 C4 DOUBLE NONE 5
NCS C3 C7 SINGLE NONE 6
NCS C4 C5 SINGLE NONE 7
NCS C4 C9 SINGLE NONE 8
NCS C5 C6 DOUBLE NONE 9
NCS C6 C10 SINGLE NONE 10
NCS C7 C8 DOUBLE NONE 11
NCS C8 C9 SINGLE NONE 12
NCS C9 O9 SINGLE BEGINDASH 13
NCS C9 C13 SINGLE NONE 14
NCS C10 C11 SINGLE NONE 15
NCS C10 C20 SINGLE NONE 16
NCS C11 C12 SINGLE NONE 17
NCS C11 O18 SINGLE NONE 18
NCS C12 "O1'" SINGLE BEGINWEDGE 19
NCS C13 O14 SINGLE NONE 20
NCS C13 C17 SINGLE BEGINWEDGE 21
NCS O14 C15 SINGLE NONE 22
NCS C15 O15 DOUBLE NONE 23
NCS C15 O16 SINGLE NONE 24
NCS O16 C17 SINGLE NONE 25
NCS O18 C19 SINGLE NONE 26
NCS C19 O19 DOUBLE NONE 27
NCS C20 C19 SINGLE BEGINWEDGE 28
NCS C20 C21 SINGLE NONE 29
NCS C20 C25 SINGLE NONE 30
NCS C21 O21 DOUBLE NONE 31
NCS C21 C22 SINGLE NONE 32
NCS C22 C23 DOUBLE NONE 33
NCS C23 C24 SINGLE NONE 34
NCS C24 C25 DOUBLE NONE 35
NCS C24 C29 SINGLE NONE 36
NCS C25 C26 SINGLE NONE 37
NCS C26 C27 DOUBLE NONE 38
NCS C27 O27 SINGLE NONE 39
NCS C27 C28 SINGLE NONE 40
NCS O27 C31 SINGLE NONE 41
NCS C28 C29 DOUBLE NONE 42
NCS C29 C30 SINGLE NONE 43
NCS "C1'" "O1'" SINGLE BEGINDASH 44
NCS "C1'" "C2'" SINGLE NONE 45
NCS "C1'" "O5'" SINGLE NONE 46
NCS "C2'" "N2'" SINGLE BEGINDASH 47
NCS "C2'" "C3'" SINGLE NONE 48
NCS "N2'" C2M SINGLE NONE 49
NCS "C3'" "O3'" SINGLE BEGINWEDGE 50
NCS "C3'" "C4'" SINGLE NONE 51
NCS "C4'" "O4'" SINGLE BEGINWEDGE 52
NCS "C4'" "C5'" SINGLE NONE 53
NCS "C5'" C5M SINGLE BEGINWEDGE 54
NCS "C5'" "O5'" SINGLE NONE 55
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NCS MurckoScaffold S1 scaffold 'O=C1OC[C@H](C2C=Cc3cc4c(cc32)[C@@H]2[C@@H](OC(=O)[C@@]23C(=O)C=Cc2ccccc23)[C@@H]4O[C@@H]2CCCCO2)O1' InChI=1S/C31H26O8/c32-24-11-9-16-5-1-2-6-22(16)31(24)26-20-14-19-17(8-10-18(19)23-15-36-30(34)37-23)13-21(20)27(28(26)39-29(31)33)38-25-7-3-4-12-35-25/h1-2,5-6,8-11,13-14,18,23,25-28H,3-4,7,12,15H2/t18-,23+,25+,26+,27+,28+,31-/m0/s1 XDFTXDJDIJFSRQ-MVEZQPQSSA-N
NCS phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NCS pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NCS C1 S1 1
NCS C2 S1 1
NCS C3 S1 1
NCS C4 S1 1
NCS C5 S1 1
NCS C6 S1 1
NCS C7 S1 1
NCS C8 S1 1
NCS C9 S1 1
NCS C10 S1 1
NCS C11 S1 1
NCS C12 S1 1
NCS C13 S1 1
NCS O14 S1 1
NCS C15 S1 1
NCS O15 S1 1
NCS O16 S1 1
NCS C17 S1 1
NCS O18 S1 1
NCS C19 S1 1
NCS O19 S1 1
NCS C20 S1 1
NCS C21 S1 1
NCS O21 S1 1
NCS C22 S1 1
NCS C23 S1 1
NCS C24 S1 1
NCS C25 S1 1
NCS C26 S1 1
NCS C27 S1 1
NCS C28 S1 1
NCS C29 S1 1
NCS "O1'" S1 1
NCS "C1'" S1 1
NCS "C2'" S1 1
NCS "C3'" S1 1
NCS "C4'" S1 1
NCS "C5'" S1 1
NCS "O5'" S1 1
NCS C1 F1 1
NCS C2 F1 1
NCS C3 F1 1
NCS C4 F1 1
NCS C5 F1 1
NCS C6 F1 1
NCS C24 F1 2
NCS C25 F1 2
NCS C26 F1 2
NCS C27 F1 2
NCS C28 F1 2
NCS C29 F1 2
NCS "C4'" F2 1
NCS "C5'" F2 1
NCS "O5'" F2 1
NCS "C1'" F2 1
NCS "C2'" F2 1
NCS "C3'" F2 1
NCS "O1'" F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NCS
_pdbe_chem_comp_rdkit_properties.exactmw 662.223
_pdbe_chem_comp_rdkit_properties.amw 662.668
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 84
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.457
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 6
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 325.521
_pdbe_chem_comp_rdkit_properties.tpsa 183.890
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.449
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.005
_pdbe_chem_comp_rdkit_properties.chi0v 22.846
_pdbe_chem_comp_rdkit_properties.chi1v 12.871
_pdbe_chem_comp_rdkit_properties.chi2v 7.652
_pdbe_chem_comp_rdkit_properties.chi3v 7.652
_pdbe_chem_comp_rdkit_properties.chi4v 5.595
_pdbe_chem_comp_rdkit_properties.chi0n 58.846
_pdbe_chem_comp_rdkit_properties.chi1n 30.491
_pdbe_chem_comp_rdkit_properties.chi2n 7.652
_pdbe_chem_comp_rdkit_properties.chi3n 7.652
_pdbe_chem_comp_rdkit_properties.chi4n 5.595
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.110
_pdbe_chem_comp_rdkit_properties.kappa1 10.694
_pdbe_chem_comp_rdkit_properties.kappa2 10.694
_pdbe_chem_comp_rdkit_properties.kappa3 4.026
_pdbe_chem_comp_rdkit_properties.Phi 2.383
#
_pdbe_chem_comp_external_mappings.comp_id NCS
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 5288992
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NCS C1 -0.468 0.511 -0.003 ETKDGv3 1
NCS C2 -0.745 0.587 1.309 ETKDGv3 2
NCS C3 0.139 1.438 2.134 ETKDGv3 3
NCS C4 1.158 2.105 1.604 ETKDGv3 4
NCS C5 1.461 2.005 0.158 ETKDGv3 5
NCS C6 0.668 1.213 -0.582 ETKDGv3 6
NCS C7 0.131 1.618 3.571 ETKDGv3 7
NCS C8 1.159 2.393 3.899 ETKDGv3 8
NCS C9 1.948 2.802 2.674 ETKDGv3 9
NCS O9 3.270 2.318 2.728 ETKDGv3 10
NCS C10 0.841 0.856 -2.017 ETKDGv3 11
NCS C11 -0.414 -0.006 -2.341 ETKDGv3 12
NCS C12 -1.160 -0.325 -1.017 ETKDGv3 13
NCS C13 1.933 4.333 2.481 ETKDGv3 14
NCS O14 2.617 4.690 1.285 ETKDGv3 15
NCS C15 3.624 5.574 1.589 ETKDGv3 16
NCS O15 4.398 6.074 0.733 ETKDGv3 17
NCS O16 3.694 5.847 2.934 ETKDGv3 18
NCS C17 2.686 5.105 3.606 ETKDGv3 19
NCS O18 0.071 -1.192 -2.948 ETKDGv3 20
NCS C19 1.447 -1.231 -2.978 ETKDGv3 21
NCS O19 2.085 -2.199 -3.471 ETKDGv3 22
NCS C20 2.089 -0.036 -2.357 ETKDGv3 23
NCS C21 2.948 0.671 -3.386 ETKDGv3 24
NCS O21 2.540 0.814 -4.571 ETKDGv3 25
NCS C22 4.220 1.281 -2.994 ETKDGv3 26
NCS C23 4.744 1.043 -1.794 ETKDGv3 27
NCS C24 4.105 0.109 -0.832 ETKDGv3 28
NCS C25 2.905 -0.460 -1.121 ETKDGv3 29
NCS C26 2.299 -1.405 -0.141 ETKDGv3 30
NCS C27 2.892 -1.662 1.036 ETKDGv3 31
NCS O27 2.318 -2.500 2.005 ETKDGv3 32
NCS C28 4.191 -1.041 1.338 ETKDGv3 33
NCS C29 4.782 -0.207 0.467 ETKDGv3 34
NCS C30 6.101 0.424 0.828 ETKDGv3 35
NCS C31 1.031 -3.103 1.897 ETKDGv3 36
NCS "O1'" -2.517 0.076 -1.125 ETKDGv3 37
NCS "C1'" -3.407 -0.912 -0.634 ETKDGv3 38
NCS "C2'" -3.669 -1.993 -1.718 ETKDGv3 39
NCS "N2'" -4.165 -1.373 -2.973 ETKDGv3 40
NCS C2M -4.213 -2.316 -4.098 ETKDGv3 41
NCS "C3'" -4.648 -3.045 -1.133 ETKDGv3 42
NCS "O3'" -4.004 -3.795 -0.133 ETKDGv3 43
NCS "C4'" -5.902 -2.365 -0.545 ETKDGv3 44
NCS "O4'" -6.668 -3.289 0.187 ETKDGv3 45
NCS "C5'" -5.551 -1.139 0.339 ETKDGv3 46
NCS C5M -5.147 -1.484 1.786 ETKDGv3 47
NCS "O5'" -4.619 -0.263 -0.285 ETKDGv3 48
NCS H2 -1.562 0.033 1.751 ETKDGv3 49
NCS H5 2.322 2.499 -0.273 ETKDGv3 50
NCS H7 -0.574 1.185 4.268 ETKDGv3 51
NCS H8 1.397 2.677 4.916 ETKDGv3 52
NCS HO9 3.233 1.336 2.873 ETKDGv3 53
NCS H10 0.814 1.791 -2.623 ETKDGv3 54
NCS H11 -1.075 0.530 -3.057 ETKDGv3 55
NCS H12 -1.009 -1.399 -0.755 ETKDGv3 56
NCS H13 0.884 4.701 2.417 ETKDGv3 57
NCS H171 1.999 5.800 4.133 ETKDGv3 58
NCS H172 3.163 4.427 4.347 ETKDGv3 59
NCS H22 4.741 1.928 -3.688 ETKDGv3 60
NCS H23 5.681 1.524 -1.550 ETKDGv3 61
NCS H26 1.349 -1.859 -0.377 ETKDGv3 62
NCS H28 4.657 -1.268 2.289 ETKDGv3 63
NCS H301 5.984 1.527 0.880 ETKDGv3 64
NCS H302 6.479 0.073 1.812 ETKDGv3 65
NCS H303 6.862 0.167 0.061 ETKDGv3 66
NCS H311 1.005 -3.796 1.029 ETKDGv3 67
NCS H312 0.825 -3.684 2.819 ETKDGv3 68
NCS H313 0.250 -2.322 1.786 ETKDGv3 69
NCS "H1'" -2.974 -1.388 0.277 ETKDGv3 70
NCS "H2'" -2.704 -2.505 -1.931 ETKDGv3 71
NCS HN21 -5.111 -0.949 -2.839 ETKDGv3 72
NCS HN22 -3.514 -0.604 -3.256 ETKDGv3 73
NCS HM21 -3.281 -2.919 -4.159 ETKDGv3 74
NCS HM22 -4.320 -1.755 -5.052 ETKDGv3 75
NCS HM23 -5.093 -2.988 -4.016 ETKDGv3 76
NCS "H3'" -4.984 -3.748 -1.927 ETKDGv3 77
NCS "HO3'" -3.383 -4.418 -0.593 ETKDGv3 78
NCS "H4'" -6.521 -1.989 -1.392 ETKDGv3 79
NCS "HO4'" -7.079 -3.908 -0.472 ETKDGv3 80
NCS "H5'" -6.494 -0.558 0.437 ETKDGv3 81
NCS HM51 -6.023 -1.880 2.340 ETKDGv3 82
NCS HM52 -4.797 -0.567 2.306 ETKDGv3 83
NCS HM53 -4.344 -2.245 1.829 ETKDGv3 84
#