data_NCO
#
_chem_comp.id NCO
_chem_comp.name "COBALT HEXAMMINE(III)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAC
_chem_comp.formula "Co H18 N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 3
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 161.116
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NCO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1D8X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NCO CO CO CO 3 0 N N N N N N 12.762 0.076 16.331 0.000 -0.000 0.000 CO NCO 1
NCO N1 N1 N 0 1 N N N N N N 13.429 -1.195 14.975 0.207 0.102 1.795 N1 NCO 2
NCO N2 N2 N 0 1 N N N N N N 12.114 1.401 17.689 -0.207 -0.102 -1.795 N2 NCO 3
NCO N3 N3 N 0 1 N N N N N N 13.107 1.587 15.081 0.399 -1.765 0.054 N3 NCO 4
NCO N4 N4 N 0 1 N N N N N N 14.626 0.322 17.019 1.753 0.389 -0.225 N4 NCO 5
NCO N5 N5 N 0 1 N N N N N N 12.488 -1.408 17.639 -0.399 1.765 -0.054 N5 NCO 6
NCO N6 N6 N 0 1 N N N N N N 10.913 -0.149 15.686 -1.753 -0.389 0.225 N6 NCO 7
NCO HN11 HN11 H 0 0 N N N N N N 12.983 -2.081 15.100 0.749 0.921 2.025 HN11 NCO 8
NCO HN12 HN12 H 0 0 N N N N N N 13.224 -0.845 14.061 -0.698 0.163 2.236 HN12 NCO 9
NCO HN13 HN13 H 0 0 N N N N N N 14.418 -1.303 15.077 0.687 -0.723 2.125 HN13 NCO 10
NCO HN21 HN21 H 0 0 N N N N N N 11.440 0.965 18.285 -1.046 0.391 -2.065 HN21 NCO 11
NCO HN22 HN22 H 0 0 N N N N N N 12.887 1.721 18.238 0.590 0.317 -2.250 HN22 NCO 12
NCO HN23 HN23 H 0 0 N N N N N N 11.693 2.178 17.222 -0.282 -1.069 -2.071 HN23 NCO 13
NCO HN31 HN31 H 0 0 N N N N N N 12.847 2.448 15.518 0.129 -2.197 -0.817 HN31 NCO 14
NCO HN32 HN32 H 0 0 N N N N N N 14.079 1.612 14.849 1.391 -1.881 0.194 HN32 NCO 15
NCO HN33 HN33 H 0 0 N N N N N N 12.568 1.460 14.248 -0.102 -2.200 0.814 HN33 NCO 16
NCO HN41 HN41 H 0 0 N N N N N N 14.618 0.970 17.781 2.253 -0.448 -0.483 HN41 NCO 17
NCO HN42 HN42 H 0 0 N N N N N N 14.984 -0.557 17.333 1.854 1.080 -0.954 HN42 NCO 18
NCO HN43 HN43 H 0 0 N N N N N N 15.207 0.676 16.287 2.130 0.753 0.638 HN43 NCO 19
NCO HN51 HN51 H 0 0 N N N N N N 12.126 -1.037 18.494 -0.340 2.094 -1.006 HN51 NCO 20
NCO HN52 HN52 H 0 0 N N N N N N 11.839 -2.069 17.262 -1.335 1.909 0.294 HN52 NCO 21
NCO HN53 HN53 H 0 0 N N N N N N 13.361 -1.862 17.816 0.256 2.275 0.520 HN53 NCO 22
NCO HN61 HN61 H 0 0 N N N N N N 10.298 0.422 16.230 -1.919 -0.650 1.185 HN61 NCO 23
NCO HN62 HN62 H 0 0 N N N N N N 10.859 0.125 14.726 -2.310 0.421 -0.005 HN62 NCO 24
NCO HN63 HN63 H 0 0 N N N N N N 10.643 -1.108 15.775 -2.008 -1.155 -0.381 HN63 NCO 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NCO CO N1 SING N N 1
NCO CO N2 SING N N 2
NCO CO N3 SING N N 3
NCO CO N4 SING N N 4
NCO CO N5 SING N N 5
NCO CO N6 SING N N 6
NCO N1 HN11 SING N N 7
NCO N1 HN12 SING N N 8
NCO N1 HN13 SING N N 9
NCO N2 HN21 SING N N 10
NCO N2 HN22 SING N N 11
NCO N2 HN23 SING N N 12
NCO N3 HN31 SING N N 13
NCO N3 HN32 SING N N 14
NCO N3 HN33 SING N N 15
NCO N4 HN41 SING N N 16
NCO N4 HN42 SING N N 17
NCO N4 HN43 SING N N 18
NCO N5 HN51 SING N N 19
NCO N5 HN52 SING N N 20
NCO N5 HN53 SING N N 21
NCO N6 HN61 SING N N 22
NCO N6 HN62 SING N N 23
NCO N6 HN63 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NCO InChI InChI 1.06 InChI=1S/Co.6H3N/h;6*1H3/q+3;;;;;;
NCO InChIKey InChI 1.06 DYLMFCCYOUSRTK-UHFFFAOYSA-N
NCO SMILES_CANONICAL CACTVS 3.385 N.N.N.N.N.N.[Co+3]
NCO SMILES CACTVS 3.385 N.N.N.N.N.N.[Co+3]
NCO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[NH3][Co+3]([NH3])([NH3])([NH3])([NH3])[NH3]"
NCO SMILES "OpenEye OEToolkits" 2.0.7 "[NH3][Co+3]([NH3])([NH3])([NH3])([NH3])[NH3]"
#
_pdbx_chem_comp_identifier.comp_id NCO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier hexakis($l^{4}-azanyl)cobalt(3+)
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NCO 'Create component' 1999-07-08 RCSB
NCO 'Modify descriptor' 2023-09-23 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id NCO
_pdbe_chem_comp_drugbank_details.drugbank_id DB03350
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Cobalt hexammine ion'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
NCO 'Cobalt hexammine ion' DrugBank ?
NCO 'Cobalt Hexammine(III)' DrugBank ?
NCO hexaamminecobalt(3+) DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id NCO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03350
_pdbe_chem_comp_drugbank_classification.parent 'Miscellaneous mixed metal/non-metals'
_pdbe_chem_comp_drugbank_classification.kingdom 'Inorganic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Miscellaneous mixed metal/non-metals'
_pdbe_chem_comp_drugbank_classification.superclass 'Mixed metal/non-metal compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of inorganic compounds known as miscellaneous mixed metal/non-metals. These are inorganic compounds containing non-metal as well as metal atoms but not belonging to afore mentioned classes.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
NCO DB03350 'Outer membrane protein TolC' 'Escherichia coli (strain K12)' P02930 unknown 1
NCO DB03350 'Chorismate synthase' 'Streptococcus pneumoniae (strain ATCC BAA-255 / R6)' P0A2Y7 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NCO CO Co 5.173 0.062 1
NCO N1 N 6.322 1.026 2
NCO N2 N 3.874 -0.688 3
NCO N3 N 4.209 1.211 4
NCO N4 N 5.434 -1.415 5
NCO N5 N 4.660 1.471 6
NCO N6 N 6.582 -0.451 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NCO N1 CO DATIVE NONE 1
NCO N2 CO DATIVE NONE 2
NCO N3 CO DATIVE NONE 3
NCO N4 CO DATIVE NONE 4
NCO N5 CO DATIVE NONE 5
NCO N6 CO DATIVE NONE 6
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id NCO
_pdbe_chem_comp_rdkit_properties.exactmw 161.091
_pdbe_chem_comp_rdkit_properties.amw 161.119
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 18
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 67.674
_pdbe_chem_comp_rdkit_properties.tpsa 160.800
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.969
_pdbe_chem_comp_rdkit_properties.CrippenMR 30.133
_pdbe_chem_comp_rdkit_properties.chi0v 4.058
_pdbe_chem_comp_rdkit_properties.chi1v 3.688
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 21.017
_pdbe_chem_comp_rdkit_properties.chi1n 8.944
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.266
_pdbe_chem_comp_rdkit_properties.kappa1 0.485
_pdbe_chem_comp_rdkit_properties.kappa2 0.746
_pdbe_chem_comp_rdkit_properties.kappa3 1606.177
_pdbe_chem_comp_rdkit_properties.Phi 0.052
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NCO UniChem DrugBank DB03350
NCO UniChem ChEBI 30027
NCO UniChem 'PubChem TPHARMA' 16899108
NCO UniChem BRENDA 144074
NCO UniChem BRENDA 49953
NCO UniChem 'Probes And Drugs' PD059674
NCO UniChem ACTor 14695-95-5
NCO UniChem PubChem 453369
NCO UniChem PubChem 6102370
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NCO CO 0.000 -0.000 0.000 ETKDGv3 1
NCO N1 0.361 1.297 1.405 ETKDGv3 2
NCO N2 -0.361 -1.297 -1.405 ETKDGv3 3
NCO N3 -1.494 1.078 -0.626 ETKDGv3 4
NCO N4 -1.205 -0.964 1.185 ETKDGv3 5
NCO N5 1.494 -1.078 0.626 ETKDGv3 6
NCO N6 1.205 0.964 -1.185 ETKDGv3 7
NCO HN11 1.310 1.155 1.816 ETKDGv3 8
NCO HN12 0.339 2.272 1.033 ETKDGv3 9
NCO HN13 -0.333 1.243 2.182 ETKDGv3 10
NCO HN21 -0.339 -2.272 -1.033 ETKDGv3 11
NCO HN22 0.333 -1.243 -2.182 ETKDGv3 12
NCO HN23 -1.310 -1.155 -1.816 ETKDGv3 13
NCO HN31 -2.408 0.647 -0.362 ETKDGv3 14
NCO HN32 -1.475 2.045 -0.235 ETKDGv3 15
NCO HN33 -1.491 1.160 -1.667 ETKDGv3 16
NCO HN41 -0.693 -1.512 1.910 ETKDGv3 17
NCO HN42 -1.809 -1.628 0.652 ETKDGv3 18
NCO HN43 -1.848 -0.309 1.684 ETKDGv3 19
NCO HN51 1.491 -1.160 1.667 ETKDGv3 20
NCO HN52 2.408 -0.647 0.362 ETKDGv3 21
NCO HN53 1.475 -2.045 0.235 ETKDGv3 22
NCO HN61 0.693 1.512 -1.910 ETKDGv3 23
NCO HN62 1.809 1.628 -0.652 ETKDGv3 24
NCO HN63 1.848 0.309 -1.684 ETKDGv3 25
#