data_NAI
#
_chem_comp.id NAI
_chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C21 H29 N7 O14 P2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms NADH
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-12-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 665.441
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NAI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EK6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NAI PA AP P 0 1 N N S N N N 33.720 21.097 42.151 -0.830 0.715 0.782 PA NAI 1
NAI O1A AO1 O 0 1 N N N N N N 32.300 21.491 42.270 -1.220 -0.283 1.803 O1A NAI 2
NAI O2A AO2 O 0 1 N N N N N N 34.461 20.851 43.450 -0.185 2.000 1.506 O2A NAI 3
NAI O5B AO5* O 0 1 N N N N N N 34.582 22.165 41.334 -2.131 1.165 -0.053 O5B NAI 4
NAI C5B AC5* C 0 1 N N N N N N 34.006 23.115 40.422 -3.094 1.623 0.898 C5B NAI 5
NAI C4B AC4* C 0 1 N N R N N N 34.401 24.461 40.964 -4.362 2.068 0.167 C4B NAI 6
NAI O4B AO4* O 0 1 N N N N N N 33.842 25.453 40.072 -4.998 0.933 -0.444 O4B NAI 7
NAI C3B AC3* C 0 1 N N S N N N 33.815 24.790 42.364 -5.361 2.672 1.172 C3B NAI 8
NAI O3B AO3* O 0 1 N N N N N N 34.830 25.236 43.278 -5.655 4.031 0.839 O3B NAI 9
NAI C2B AC2* C 0 1 N N R N N N 32.755 25.872 42.023 -6.628 1.790 1.019 C2B NAI 10
NAI O2B AO2* O 0 1 N N N N N N 32.577 26.831 43.100 -7.812 2.589 1.052 O2B NAI 11
NAI C1B AC1* C 0 1 N N R N N N 33.358 26.532 40.787 -6.422 1.166 -0.385 C1B NAI 12
NAI N9A AN9 N 0 1 Y N N N N N 32.381 27.168 39.943 -7.156 -0.096 -0.505 N9A NAI 13
NAI C8A AC8 C 0 1 Y N N N N N 31.151 26.722 39.577 -6.678 -1.339 -0.209 C8A NAI 14
NAI N7A AN7 N 0 1 Y N N N N N 30.501 27.564 38.756 -7.598 -2.233 -0.432 N7A NAI 15
NAI C5A AC5 C 0 1 Y N N N N N 31.400 28.603 38.591 -8.720 -1.623 -0.883 C5A NAI 16
NAI C6A AC6 C 0 1 Y N N N N N 31.295 29.824 37.868 -9.995 -2.064 -1.275 C6A NAI 17
NAI N6A AN6 N 0 1 N N N N N N 30.236 30.208 37.144 -10.319 -3.409 -1.244 N6A NAI 18
NAI N1A AN1 N 0 1 Y N N N N N 32.362 30.639 37.930 -10.883 -1.160 -1.676 N1A NAI 19
NAI C2A AC2 C 0 1 Y N N N N N 33.445 30.286 38.705 -10.583 0.125 -1.708 C2A NAI 20
NAI N3A AN3 N 0 1 Y N N N N N 33.631 29.183 39.411 -9.402 0.585 -1.350 N3A NAI 21
NAI C4A AC4 C 0 1 Y N N N N N 32.551 28.387 39.326 -8.452 -0.244 -0.930 C4A NAI 22
NAI O3 O3 O 0 1 N N N N N N 33.806 19.827 41.237 0.251 0.064 -0.219 O3 NAI 23
NAI PN NP P 0 1 N N S N N N 35.095 18.935 40.784 1.247 -0.822 0.684 PN NAI 24
NAI O1N NO1 O 0 1 N N N N N N 34.870 17.546 41.211 0.555 -2.238 1.014 O1N NAI 25
NAI O2N NO2 O 0 1 N N N N N N 36.350 19.543 41.257 1.535 -0.107 1.948 O2N NAI 26
NAI O5D NO5* O 0 1 N N N N N N 35.055 19.015 39.180 2.621 -1.070 -0.117 O5D NAI 27
NAI C5D NC5* C 0 1 N N N N N N 35.836 19.985 38.468 3.501 -1.756 0.775 C5D NAI 28
NAI C4D NC4* C 0 1 N N R N N N 35.471 19.829 36.997 4.833 -2.024 0.072 C4D NAI 29
NAI O4D NO4* O 0 1 N N N N N N 35.704 18.438 36.584 5.518 -0.781 -0.198 O4D NAI 30
NAI C3D NC3* C 0 1 N N S N N N 34.060 20.185 36.560 5.787 -2.807 1.001 C3D NAI 31
NAI O3D NO3* O 0 1 N N N N N N 34.018 20.823 35.270 5.754 -4.201 0.692 O3D NAI 32
NAI C2D NC2* C 0 1 N N R N N N 33.421 18.782 36.499 7.183 -2.215 0.692 C2D NAI 33
NAI O2D NO2* O 0 1 N N N N N N 32.279 18.778 35.612 8.055 -3.228 0.185 O2D NAI 34
NAI C1D NC1* C 0 1 N N R N N N 34.560 17.929 35.979 6.904 -1.143 -0.385 C1D NAI 35
NAI N1N NN1 N 0 1 N N N N N N 34.437 16.478 36.224 7.768 0.022 -0.180 N1N NAI 36
NAI C2N NC2 C 0 1 N N N N N N 34.466 16.104 37.551 8.689 0.365 -1.129 C2N NAI 37
NAI C3N NC3 C 0 1 N N N N N N 34.317 14.752 37.813 9.234 1.595 -1.138 C3N NAI 38
NAI C7N NC7 C 0 1 N N N N N N 34.100 14.190 39.218 10.192 1.922 -2.126 C7N NAI 39
NAI O7N NO7 O 0 1 N N N N N N 33.880 12.996 39.350 10.515 1.093 -2.958 O7N NAI 40
NAI N7N NN7 N 0 1 N N N N N N 34.199 14.992 40.305 10.747 3.150 -2.147 N7N NAI 41
NAI C4N NC4 C 0 1 N N N N N N 34.661 13.797 36.786 8.850 2.627 -0.116 C4N NAI 42
NAI C5N NC5 C 0 1 N N N N N N 34.463 14.292 35.469 8.142 1.995 1.046 C5N NAI 43
NAI C6N NC6 C 0 1 N N N N N N 34.335 15.596 35.127 7.650 0.778 0.979 C6N NAI 44
NAI HOA2 2HOA H 0 0 N N N N N N 35.373 20.597 43.373 0.055 2.624 0.807 HOA2 NAI 45
NAI H51A AH51 H 0 0 N N N N N N 34.296 22.953 39.357 -3.337 0.814 1.587 H51A NAI 46
NAI H52A AH52 H 0 0 N N N N N N 32.907 22.991 40.274 -2.682 2.464 1.457 H52A NAI 47
NAI H4B AH4* H 0 1 N N N N N N 35.513 24.458 41.045 -4.110 2.806 -0.595 H4B NAI 48
NAI H3B AH3* H 0 1 N N N N N N 33.374 23.915 42.897 -4.970 2.605 2.186 H3B NAI 49
NAI HO3A AHO3 H 0 0 N N N N N N 34.471 25.437 44.134 -6.329 4.332 1.465 HO3A NAI 50
NAI H2B AH2* H 0 1 N N N N N N 31.735 25.449 41.862 -6.660 1.017 1.787 H2B NAI 51
NAI HO2A AHO2 H 0 0 N N N N N N 31.928 27.493 42.891 -7.883 2.946 1.948 HO2A NAI 52
NAI H1B AH1* H 0 1 N N N N N N 34.093 27.315 41.085 -6.729 1.863 -1.164 H1B NAI 53
NAI H8A AH8 H 0 1 N N N N N N 30.719 25.764 39.915 -5.684 -1.550 0.155 H8A NAI 54
NAI H61A AH61 H 0 0 N N N N N N 30.160 31.083 36.625 -9.663 -4.060 -0.949 H61A NAI 55
NAI H62A AH62 H 0 0 N N N N N N 29.428 30.166 37.765 -11.203 -3.702 -1.517 H62A NAI 56
NAI H2A AH2 H 0 1 N N N N N N 34.289 30.992 38.770 -11.334 0.826 -2.041 H2A NAI 57
NAI HO1N 1NHO H 0 0 N N N N N N 35.620 17.026 40.947 0.384 -2.670 0.166 HO1N NAI 58
NAI H51N NH51 H 0 0 N N N N N N 35.706 21.024 38.849 3.051 -2.703 1.074 H51N NAI 59
NAI H52N NH52 H 0 0 N N N N N N 36.930 19.903 38.664 3.674 -1.141 1.659 H52N NAI 60
NAI H4D NH4* H 0 1 N N N N N N 36.127 20.584 36.505 4.668 -2.575 -0.854 H4D NAI 61
NAI H3D NH3* H 0 1 N N N N N N 33.554 20.914 37.234 5.524 -2.641 2.045 H3D NAI 62
NAI HO3N NHO3 H 0 0 N N N N N N 33.135 21.045 34.996 6.366 -4.637 1.301 HO3N NAI 63
NAI H2D NH2* H 0 1 N N N N N N 33.021 18.416 37.473 7.609 -1.757 1.584 H2D NAI 64
NAI HO2N NHO2 H 0 0 N N N N N N 31.885 17.914 35.574 8.141 -3.896 0.879 HO2N NAI 65
NAI H1D NH1* H 0 1 N N N N N N 34.574 17.992 34.865 7.057 -1.557 -1.381 H1D NAI 66
NAI H2N NH2 H 0 1 N N N N N N 34.600 16.844 38.357 8.980 -0.356 -1.879 H2N NAI 67
NAI H71N NH71 H 0 0 N N N N N N 34.382 15.989 40.194 11.404 3.374 -2.825 H71N NAI 68
NAI H72N NH72 H 0 0 N N N N N N 34.054 14.617 41.242 10.486 3.811 -1.487 H72N NAI 69
NAI H4N NH4 H 0 1 N N N N N N 35.706 13.431 36.918 8.190 3.356 -0.584 H4N NAI 70
NAI H42N 2NH4 H 0 0 N N N N N N 34.110 12.838 36.935 9.746 3.134 0.244 H42N NAI 71
NAI H5N NH5 H 0 1 N N N N N N 34.402 13.588 34.621 8.037 2.554 1.964 H5N NAI 72
NAI H6N NH6 H 0 1 N N N N N N 34.167 15.902 34.080 7.146 0.359 1.838 H6N NAI 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NAI PA O1A DOUB N N 1
NAI PA O2A SING N N 2
NAI PA O5B SING N N 3
NAI PA O3 SING N N 4
NAI O2A HOA2 SING N N 5
NAI O5B C5B SING N N 6
NAI C5B C4B SING N N 7
NAI C5B H51A SING N N 8
NAI C5B H52A SING N N 9
NAI C4B O4B SING N N 10
NAI C4B C3B SING N N 11
NAI C4B H4B SING N N 12
NAI O4B C1B SING N N 13
NAI C3B O3B SING N N 14
NAI C3B C2B SING N N 15
NAI C3B H3B SING N N 16
NAI O3B HO3A SING N N 17
NAI C2B O2B SING N N 18
NAI C2B C1B SING N N 19
NAI C2B H2B SING N N 20
NAI O2B HO2A SING N N 21
NAI C1B N9A SING N N 22
NAI C1B H1B SING N N 23
NAI N9A C8A SING Y N 24
NAI N9A C4A SING Y N 25
NAI C8A N7A DOUB Y N 26
NAI C8A H8A SING N N 27
NAI N7A C5A SING Y N 28
NAI C5A C6A SING Y N 29
NAI C5A C4A DOUB Y N 30
NAI C6A N6A SING N N 31
NAI C6A N1A DOUB Y N 32
NAI N6A H61A SING N N 33
NAI N6A H62A SING N N 34
NAI N1A C2A SING Y N 35
NAI C2A N3A DOUB Y N 36
NAI C2A H2A SING N N 37
NAI N3A C4A SING Y N 38
NAI O3 PN SING N N 39
NAI PN O1N SING N N 40
NAI PN O2N DOUB N N 41
NAI PN O5D SING N N 42
NAI O1N HO1N SING N N 43
NAI O5D C5D SING N N 44
NAI C5D C4D SING N N 45
NAI C5D H51N SING N N 46
NAI C5D H52N SING N N 47
NAI C4D O4D SING N N 48
NAI C4D C3D SING N N 49
NAI C4D H4D SING N N 50
NAI O4D C1D SING N N 51
NAI C3D O3D SING N N 52
NAI C3D C2D SING N N 53
NAI C3D H3D SING N N 54
NAI O3D HO3N SING N N 55
NAI C2D O2D SING N N 56
NAI C2D C1D SING N N 57
NAI C2D H2D SING N N 58
NAI O2D HO2N SING N N 59
NAI C1D N1N SING N N 60
NAI C1D H1D SING N N 61
NAI N1N C2N SING N N 62
NAI N1N C6N SING N N 63
NAI C2N C3N DOUB N N 64
NAI C2N H2N SING N N 65
NAI C3N C7N SING N N 66
NAI C3N C4N SING N N 67
NAI C7N O7N DOUB N N 68
NAI C7N N7N SING N N 69
NAI N7N H71N SING N N 70
NAI N7N H72N SING N N 71
NAI C4N C5N SING N N 72
NAI C4N H4N SING N N 73
NAI C4N H42N SING N N 74
NAI C5N C6N DOUB N N 75
NAI C5N H5N SING N N 76
NAI C6N H6N SING N N 77
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NAI SMILES_CANONICAL CACTVS 3.341 'NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O'
NAI SMILES CACTVS 3.341 'NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O'
NAI SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N'
NAI SMILES 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N'
NAI InChI InChI 1.03 'InChI=1S/C21H29N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1,3-4,7-8,10-11,13-16,20-21,29-32H,2,5-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1'
NAI InChIKey InChI 1.03 BOPGDPNILDQYTO-NNYOXOHSSA-N
#
_pdbx_chem_comp_identifier.comp_id NAI
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 1.5.0
_pdbx_chem_comp_identifier.identifier
'[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NAI 'Create component' 1999-12-13 RCSB
NAI 'Modify descriptor' 2011-06-04 RCSB
NAI 'Modify synonyms' 2021-03-01 PDBE
NAI 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NAI
_pdbx_chem_comp_synonyms.name NADH
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id NAI
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom O3B
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id NAI
_pdbe_chem_comp_drugbank_details.drugbank_id DB00157
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name NADH
_pdbe_chem_comp_drugbank_details.description
"NADH is the reduced form of NAD+, and NAD+ is the oxidized form of NADH, a coenzyme composed of ribosylnicotinamide 5'-diphosphate coupled to adenosine 5'-phosphate by pyrophosphate linkage. It is found widely in nature and is involved in numerous enzymatic reactions in which it serves as an electron carrier by being alternately oxidized (NAD+) and reduced (NADH). It forms NADP with the addition of a phosphate group to the 2' position of the adenosyl nucleotide through an ester linkage. (Dorland, 27th ed)"
_pdbe_chem_comp_drugbank_details.cas_number 58-68-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'NADH is synthesized by the body and thus is not an essential nutrient. It does require the essential nutrient nicotinamide for its synthesis, and its role in energy production is certainly an essential one. In addition to its role in the mitochondrial electron transport chain, NADH is produced in the cytosol. The mitochondrial membrane is impermeable to NADH, and this permeability barrier effectively separates the cytoplasmic from the mitochondrial NADH pools. However, cytoplasmic NADH can be used for biologic energy production. This occurs when the malate-aspartate shuttle introduces reducing equivalents from NADH in the cytosol to the electron transport chain of the mitochondria. This shuttle mainly occurs in the liver and heart.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
NAI NADH wwPDB ?
NAI '1,4-dihydronicotinamide adenine dinucleotide' DrugBank ?
NAI DPNH DrugBank ?
NAI 'NAD reduced form' DrugBank ?
NAI NADH DrugBank ?
NAI 'Nicotinamide adenine dinucleotide (reduced)' DrugBank ?
NAI 'Nicotinamide-adenine dinucleotide, reduced' DrugBank ?
NAI 'Reduced nicotinamide adenine diphosphate' DrugBank ?
NAI 'Reduced nicotinamide-adenine dinucleotide' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id NAI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00157
_pdbe_chem_comp_drugbank_classification.parent "(5'->5')-dinucleotides"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class "(5'->5')-dinucleotides"
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as (5'->5')-dinucleotides. These are dinucleotides where the two bases are connected via a (5'->5')-phosphodiester linkage."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 3' Humans P03897 yes 1
NAI DB00157 'UDP-glucose 6-dehydrogenase' Humans O60701 unknown 2
NAI DB00157 'Alcohol dehydrogenase 1A' Humans P07327 unknown 3
NAI DB00157 'Sorbitol dehydrogenase' Humans Q00796 unknown 4
NAI DB00157 'All-trans-retinol dehydrogenase [NAD(+)] ADH4' Humans P08319 unknown 5
NAI DB00157 'Alcohol dehydrogenase 1C' Humans P00326 unknown 6
NAI DB00157 'All-trans-retinol dehydrogenase [NAD(+)] ADH1B' Humans P00325 unknown 7
NAI DB00157 'All-trans-retinol dehydrogenase [NAD(+)] ADH7' Humans P40394 unknown 8
NAI DB00157 'Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic' Humans P21695 unknown 9
NAI DB00157 'L-lactate dehydrogenase A-like 6A' Humans Q6ZMR3 unknown 10
NAI DB00157 'Alcohol dehydrogenase class-3' Humans P11766 unknown 11
NAI DB00157 'Aldo-keto reductase family 1 member B1' Humans P15121 unknown 12
NAI DB00157 '3-hydroxyacyl-CoA dehydrogenase type-2' Humans Q99714 unknown 13
NAI DB00157 'Malate dehydrogenase, mitochondrial' Humans P40926 unknown 14
NAI DB00157 'L-lactate dehydrogenase A chain' Humans P00338 unknown 15
NAI DB00157 'NAD-dependent malic enzyme, mitochondrial' Humans P23368 unknown 16
NAI DB00157 'Peroxisomal multifunctional enzyme type 2' Humans P51659 unknown 17
NAI DB00157 'L-lactate dehydrogenase A-like 6B' Humans Q9BYZ2 unknown 18
NAI DB00157 'L-lactate dehydrogenase C chain' Humans P07864 unknown 19
NAI DB00157 'L-lactate dehydrogenase B chain' Humans P07195 unknown 20
NAI DB00157 'Peroxisomal bifunctional enzyme' Humans Q08426 unknown 21
NAI DB00157 'Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial' Humans Q16836 unknown 22
NAI DB00157 'NADP-dependent malic enzyme, mitochondrial' Humans Q16798 unknown 23
NAI DB00157 'D-beta-hydroxybutyrate dehydrogenase, mitochondrial' Humans Q02338 unknown 24
NAI DB00157 'Malate dehydrogenase, cytoplasmic' Humans P40925 unknown 25
NAI DB00157 '3-hydroxyisobutyrate dehydrogenase, mitochondrial' Humans P31937 unknown 26
NAI DB00157 '17-beta-hydroxysteroid dehydrogenase type 3' Humans P37058 unknown 27
NAI DB00157 '3-hydroxy-3-methylglutaryl-coenzyme A reductase' Humans P04035 unknown 28
NAI DB00157 'NADP-dependent malic enzyme' Humans P48163 unknown 29
NAI DB00157 'D-3-phosphoglycerate dehydrogenase' Humans O43175 unknown 30
NAI DB00157 '3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7' Humans P56937 unknown 31
NAI DB00157 'Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial' Humans P51553 unknown 32
NAI DB00157 'Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial' Humans O43837 unknown 33
NAI DB00157 'Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial' Humans P50213 unknown 34
NAI DB00157 '17-beta-hydroxysteroid dehydrogenase type 1' Humans P14061 unknown 35
NAI DB00157 '17-beta-hydroxysteroid dehydrogenase type 2' Humans P37059 unknown 36
NAI DB00157 'Retinol dehydrogenase 5' Humans Q92781 unknown 37
NAI DB00157 'GDH/6PGL endoplasmic bifunctional protein' Humans O95479 unknown 38
NAI DB00157 '(3R)-3-hydroxyacyl-CoA dehydrogenase' Humans Q92506 unknown 39
NAI DB00157 'Aldo-keto reductase family 1 member C4' Humans P17516 unknown 40
NAI DB00157 "Inosine-5'-monophosphate dehydrogenase 2" Humans P12268 unknown 41
NAI DB00157 'Aldo-keto reductase family 1 member C3' Humans P42330 unknown 42
NAI DB00157 '15-hydroxyprostaglandin dehydrogenase [NAD(+)]' Humans P15428 unknown 43
NAI DB00157 'GDP-L-fucose synthase' Humans Q13630 unknown 44
NAI DB00157 'Aldo-keto reductase family 1 member C1' Humans Q04828 unknown 45
NAI DB00157 '11-beta-hydroxysteroid dehydrogenase 1' Humans P28845 unknown 46
NAI DB00157 '3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2' Humans P26439 unknown 47
NAI DB00157 '3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1' Humans P14060 unknown 48
NAI DB00157 "Inosine-5'-monophosphate dehydrogenase 1" Humans P20839 unknown 49
NAI DB00157 'Trifunctional enzyme subunit alpha, mitochondrial' Humans P40939 unknown 50
NAI DB00157 'Aldehyde dehydrogenase, mitochondrial' Humans P05091 unknown 51
NAI DB00157 '11-beta-hydroxysteroid dehydrogenase type 2' Humans P80365 unknown 52
NAI DB00157 'Aldo-keto reductase family 1 member C2' Humans P52895 unknown 53
NAI DB00157 'Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating' Humans Q15738 unknown 54
NAI DB00157 'Aldehyde dehydrogenase family 3 member B2' Humans P48448 unknown 55
NAI DB00157 'Methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial' Humans Q02252 unknown 56
NAI DB00157 'Aldehyde dehydrogenase, dimeric NADP-preferring' Humans P30838 unknown 57
NAI DB00157 'Aldehyde dehydrogenase 1A1' Humans P00352 unknown 58
NAI DB00157 'Glyceraldehyde-3-phosphate dehydrogenase, testis-specific' Humans O14556 unknown 59
NAI DB00157 '4-trimethylaminobutyraldehyde dehydrogenase' Humans P49189 unknown 60
NAI DB00157 'Retinaldehyde dehydrogenase 3' Humans P47895 unknown 61
NAI DB00157 'Aldehyde dehydrogenase X, mitochondrial' Humans P30837 unknown 62
NAI DB00157 'Aldehyde dehydrogenase family 3 member B1' Humans P43353 unknown 63
NAI DB00157 'Glyceraldehyde-3-phosphate dehydrogenase' Humans P04406 unknown 64
NAI DB00157 'Retinal dehydrogenase 2' Humans O94788 unknown 65
NAI DB00157 'Aldehyde dehydrogenase family 3 member A2' Humans P51648 unknown 66
NAI DB00157 'Succinate-semialdehyde dehydrogenase, mitochondrial' Humans P51649 unknown 67
NAI DB00157 'Alpha-aminoadipic semialdehyde dehydrogenase' Humans P49419 unknown 68
NAI DB00157 'Flavin reductase (NADPH)' Humans P30043 unknown 69
NAI DB00157 'Pyrroline-5-carboxylate reductase 2' Humans Q96C36 unknown 70
NAI DB00157 'Pyrroline-5-carboxylate reductase 1, mitochondrial' Humans P32322 unknown 71
NAI DB00157 'Glutamate dehydrogenase 1, mitochondrial' Humans P00367 unknown 72
NAI DB00157 'Pyruvate dehydrogenase E1 component subunit beta, mitochondrial' Humans P11177 unknown 73
NAI DB00157 'Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial' Humans P29803 unknown 74
NAI DB00157 'Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial' Humans P08559 unknown 75
NAI DB00157 'Biliverdin reductase A' Humans P53004 unknown 76
NAI DB00157 'Short-chain specific acyl-CoA dehydrogenase, mitochondrial' Humans P16219 unknown 77
NAI DB00157 'Dihydrofolate reductase' Humans P00374 unknown 78
NAI DB00157 '2-oxoglutarate dehydrogenase complex component E1' Humans Q02218 unknown 79
NAI DB00157 'Glutamate dehydrogenase 2, mitochondrial' Humans P49448 unknown 80
NAI DB00157 '7-dehydrocholesterol reductase' Humans Q9UBM7 unknown 81
NAI DB00157 'Ribosyldihydronicotinamide dehydrogenase [quinone]' Humans P16083 unknown 82
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 2' Humans P03891 unknown 83
NAI DB00157 'Alpha-aminoadipic semialdehyde synthase, mitochondrial' Humans Q9UDR5 unknown 84
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial' Humans O75251 unknown 85
NAI DB00157 'C-1-tetrahydrofolate synthase, cytoplasmic' Humans P11586 unknown 86
NAI DB00157 'Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial' Humans P13995 unknown 87
NAI DB00157 'Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial' Humans P30038 unknown 88
NAI DB00157 'NADH-cytochrome b5 reductase 3' Humans P00387 unknown 89
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11' Humans Q86Y39 unknown 90
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 4' Humans P03905 unknown 91
NAI DB00157 'Dihydropteridine reductase' Humans P09417 unknown 92
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 1' Humans P03886 unknown 93
NAI DB00157 'NAD(P) transhydrogenase, mitochondrial' Humans Q13423 unknown 94
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5' Humans Q16718 unknown 95
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial' Humans Q16795 unknown 96
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 4L' Humans P03901 unknown 97
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial' Humans O95299 unknown 98
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7' Humans O95182 unknown 99
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1' Humans O15239 unknown 100
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 6' Humans P03923 unknown 101
NAI DB00157 'NADH-ubiquinone oxidoreductase chain 5' Humans P03915 unknown 102
NAI DB00157 'Cytochrome c oxidase subunit NDUFA4' Humans O00483 unknown 103
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6' Humans P56556 unknown 104
NAI DB00157 'Acyl carrier protein, mitochondrial' Humans O14561 unknown 105
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2' Humans O43678 unknown 106
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8' Humans P51970 unknown 107
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3' Humans O95167 unknown 108
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial' Humans O95169 unknown 109
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 subunit C2' Humans O95298 unknown 110
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1' Humans O75438 unknown 111
NAI DB00157 'NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial' Humans P28331 unknown 112
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10' Humans O96000 unknown 113
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4' Humans O95168 unknown 114
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3' Humans O43676 unknown 115
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial' Humans O95178 unknown 116
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7' Humans P17568 unknown 117
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9' Humans Q9Y6M9 unknown 118
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial' Humans O75306 unknown 119
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial' Humans O43674 unknown 120
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial' Humans O43677 unknown 121
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6' Humans O95139 unknown 122
NAI DB00157 'NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial' Humans P56181 unknown 123
NAI DB00157 'Dihydrolipoyl dehydrogenase, mitochondrial' Humans P09622 unknown 124
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial' Humans O75489 unknown 125
NAI DB00157 'Glutathione reductase, mitochondrial' Humans P00390 unknown 126
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12' Humans Q9UI09 unknown 127
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 5' Humans O43920 unknown 128
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial' Humans O43181 unknown 129
NAI DB00157 'NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial' Humans P49821 unknown 130
NAI DB00157 'NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial' Humans P19404 unknown 131
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13' Humans Q9P0J0 unknown 132
NAI DB00157 'Cysteine dioxygenase type 1' Humans Q16878 unknown 133
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial' Humans O75380 unknown 134
NAI DB00157 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2' Humans Q9NRX3 unknown 135
NAI DB00157 'NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial' Humans O00217 unknown 136
NAI DB00157 'Cytochrome P450 4A11' Humans Q02928 unknown 137
NAI DB00157 'Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial' Humans P10515 unknown 138
NAI DB00157 'Aminomethyltransferase, mitochondrial' Humans P48728 unknown 139
NAI DB00157 'Methylsterol monooxygenase 1' Humans Q15800 unknown 140
NAI DB00157 'Heme oxygenase 1' Humans P09601 unknown 141
NAI DB00157 'Heme oxygenase 2' Humans P30519 unknown 142
NAI DB00157 'Steroid 17-alpha-hydroxylase/17,20 lyase' Humans P05093 unknown 143
NAI DB00157 Tyrosinase Humans P14679 unknown 144
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NAI PA P 7.571 1.022 1
NAI O1A O 8.998 1.483 2
NAI O2A O 6.144 0.561 3
NAI O5B O 8.032 -0.405 4
NAI C5B C 7.027 -1.518 5
NAI C4B C 7.487 -2.946 6
NAI O4B O 6.604 -4.158 7
NAI C3B C 8.913 -3.412 8
NAI O3B O 10.129 -2.532 9
NAI C2B C 8.911 -4.912 10
NAI O2B O 10.123 -5.796 11
NAI C1B C 7.483 -5.373 12
NAI N9A N 7.018 -6.799 13
NAI C8A C 7.893 -8.006 14
NAI N7A N 7.018 -9.213 15
NAI C5A C 5.598 -8.756 16
NAI C6A C 4.299 -9.506 17
NAI N6A N 4.299 -11.006 18
NAI N1A N 3.000 -8.756 19
NAI C2A C 3.000 -7.256 20
NAI N3A N 4.299 -6.506 21
NAI C4A C 5.598 -7.256 22
NAI O3 O 7.110 2.449 23
NAI PN P 8.116 3.562 24
NAI O1N O 7.003 4.568 25
NAI O2N O 9.229 2.557 26
NAI O5D O 9.121 4.675 27
NAI C5D C 8.660 6.103 28
NAI C4D C 9.666 7.216 29
NAI O4D O 11.157 7.056 30
NAI C3D C 9.357 8.684 31
NAI O3D O 7.987 9.296 32
NAI C2D C 10.657 9.431 33
NAI O2D O 10.816 10.923 34
NAI C1D C 11.770 8.426 35
NAI N1N N 13.238 8.735 36
NAI C2N C 14.239 7.619 37
NAI C3N C 15.707 7.928 38
NAI C7N C 16.709 6.811 39
NAI O7N O 16.243 5.386 40
NAI N7N N 18.177 7.121 41
NAI C4N C 16.173 9.354 42
NAI C5N C 15.171 10.470 43
NAI C6N C 13.704 10.161 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NAI PA O1A DOUBLE NONE 1
NAI PA O2A SINGLE BEGINWEDGE 2
NAI PA O5B SINGLE NONE 3
NAI PA O3 SINGLE NONE 4
NAI O5B C5B SINGLE NONE 5
NAI C4B C5B SINGLE BEGINDASH 6
NAI C4B O4B SINGLE NONE 7
NAI C4B C3B SINGLE NONE 8
NAI O4B C1B SINGLE NONE 9
NAI C3B O3B SINGLE BEGINWEDGE 10
NAI C3B C2B SINGLE NONE 11
NAI C2B O2B SINGLE BEGINWEDGE 12
NAI C2B C1B SINGLE NONE 13
NAI C1B N9A SINGLE BEGINDASH 14
NAI N9A C8A SINGLE NONE 15
NAI N9A C4A SINGLE NONE 16
NAI C8A N7A DOUBLE NONE 17
NAI N7A C5A SINGLE NONE 18
NAI C5A C6A DOUBLE NONE 19
NAI C5A C4A SINGLE NONE 20
NAI C6A N6A SINGLE NONE 21
NAI C6A N1A SINGLE NONE 22
NAI N1A C2A DOUBLE NONE 23
NAI C2A N3A SINGLE NONE 24
NAI N3A C4A DOUBLE NONE 25
NAI O3 PN SINGLE NONE 26
NAI PN O1N SINGLE BEGINDASH 27
NAI PN O2N DOUBLE NONE 28
NAI PN O5D SINGLE NONE 29
NAI O5D C5D SINGLE NONE 30
NAI C4D C5D SINGLE BEGINDASH 31
NAI C4D O4D SINGLE NONE 32
NAI C4D C3D SINGLE NONE 33
NAI O4D C1D SINGLE NONE 34
NAI C3D O3D SINGLE BEGINWEDGE 35
NAI C3D C2D SINGLE NONE 36
NAI C2D O2D SINGLE BEGINWEDGE 37
NAI C2D C1D SINGLE NONE 38
NAI C1D N1N SINGLE BEGINDASH 39
NAI N1N C2N SINGLE NONE 40
NAI N1N C6N SINGLE NONE 41
NAI C2N C3N DOUBLE NONE 42
NAI C3N C7N SINGLE NONE 43
NAI C3N C4N SINGLE NONE 44
NAI C7N O7N DOUBLE NONE 45
NAI C7N N7N SINGLE NONE 46
NAI C4N C5N SINGLE NONE 47
NAI C5N C6N DOUBLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NAI MurckoScaffold S1 scaffold 'O=[PH](OC[C@@H]1CC[C@H](N2C=CCC=C2)O1)O[PH](=O)OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1' InChI=1S/C20H27N5O7P2/c26-33(28-11-15-4-6-18(30-15)24-8-2-1-3-9-24)32-34(27)29-12-16-5-7-19(31-16)25-14-23-17-10-21-13-22-20(17)25/h2-3,8-10,13-16,18-19,33-34H,1,4-7,11-12H2/t15-,16-,18+,19+/m0/s1 QMVHHVSTFIPFPP-RNIPGJKVSA-N
NAI adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
NAI amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NAI imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
NAI phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
NAI purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
NAI pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
NAI ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NAI PA S1 1
NAI O1A S1 1
NAI O5B S1 1
NAI C5B S1 1
NAI C4B S1 1
NAI O4B S1 1
NAI C3B S1 1
NAI C2B S1 1
NAI C1B S1 1
NAI N9A S1 1
NAI C8A S1 1
NAI N7A S1 1
NAI C5A S1 1
NAI C6A S1 1
NAI N1A S1 1
NAI C2A S1 1
NAI N3A S1 1
NAI C4A S1 1
NAI O3 S1 1
NAI PN S1 1
NAI O2N S1 1
NAI O5D S1 1
NAI C5D S1 1
NAI C4D S1 1
NAI O4D S1 1
NAI C3D S1 1
NAI C2D S1 1
NAI C1D S1 1
NAI N1N S1 1
NAI C2N S1 1
NAI C3N S1 1
NAI C4N S1 1
NAI C5N S1 1
NAI C6N S1 1
NAI N1A F1 1
NAI C6A F1 1
NAI C5A F1 1
NAI C4A F1 1
NAI N3A F1 1
NAI C2A F1 1
NAI N9A F1 1
NAI C8A F1 1
NAI N7A F1 1
NAI N6A F1 1
NAI N7N F2 1
NAI C7N F2 1
NAI O7N F2 1
NAI C3N F2 1
NAI C5A F3 1
NAI C4A F3 1
NAI N9A F3 1
NAI C8A F3 1
NAI N7A F3 1
NAI O2A F4 1
NAI PA F4 1
NAI O1A F4 1
NAI O5B F4 1
NAI O3 F4 1
NAI O3 F4 2
NAI PN F4 2
NAI O2N F4 2
NAI O1N F4 2
NAI O5D F4 2
NAI N7A F5 1
NAI C8A F5 1
NAI N9A F5 1
NAI C4A F5 1
NAI C5A F5 1
NAI C6A F5 1
NAI N1A F5 1
NAI C2A F5 1
NAI N3A F5 1
NAI C5A F6 1
NAI C6A F6 1
NAI N1A F6 1
NAI C2A F6 1
NAI N3A F6 1
NAI C4A F6 1
NAI C2B F7 1
NAI C3B F7 1
NAI C4B F7 1
NAI O4B F7 1
NAI C1B F7 1
NAI C5B F7 1
NAI O5B F7 1
NAI O3B F7 1
NAI O2B F7 1
NAI C2D F7 2
NAI C3D F7 2
NAI C4D F7 2
NAI O4D F7 2
NAI C1D F7 2
NAI C5D F7 2
NAI O5D F7 2
NAI O3D F7 2
NAI O2D F7 2
#
_pdbe_chem_comp_rdkit_properties.comp_id NAI
_pdbe_chem_comp_rdkit_properties.exactmw 665.125
_pdbe_chem_comp_rdkit_properties.amw 665.446
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 21
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 20
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 23
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.524
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 288.163
_pdbe_chem_comp_rdkit_properties.tpsa 317.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.495
_pdbe_chem_comp_rdkit_properties.CrippenMR 138.817
_pdbe_chem_comp_rdkit_properties.chi0v 22.029
_pdbe_chem_comp_rdkit_properties.chi1v 13.508
_pdbe_chem_comp_rdkit_properties.chi2v 6.949
_pdbe_chem_comp_rdkit_properties.chi3v 6.949
_pdbe_chem_comp_rdkit_properties.chi4v 4.582
_pdbe_chem_comp_rdkit_properties.chi0n 49.240
_pdbe_chem_comp_rdkit_properties.chi1n 24.325
_pdbe_chem_comp_rdkit_properties.chi2n 4.719
_pdbe_chem_comp_rdkit_properties.chi3n 4.719
_pdbe_chem_comp_rdkit_properties.chi4n 2.946
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.880
_pdbe_chem_comp_rdkit_properties.kappa1 12.048
_pdbe_chem_comp_rdkit_properties.kappa2 12.487
_pdbe_chem_comp_rdkit_properties.kappa3 6.699
_pdbe_chem_comp_rdkit_properties.Phi 3.419
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NAI UniChem DrugBank DB00157
NAI UniChem 'Guide to Pharmacology' 4487
NAI UniChem 'KEGG LIGAND' C00004
NAI UniChem ChEBI 16908
NAI UniChem ZINC ZINC000008215403
NAI UniChem eMolecules 36366750
NAI UniChem fdasrs 4J24DQ0916
NAI UniChem PharmGKB PA164755085
NAI UniChem HMDB HMDB0001487
NAI UniChem 'PubChem TPHARMA' 14839494
NAI UniChem NMRShiftDB 60020520
NAI UniChem MetaboLights MTBLC16908
NAI UniChem BRENDA 237268
NAI UniChem BRENDA 3988
NAI UniChem BRENDA 8
NAI UniChem 'Probes And Drugs' PD008881
NAI UniChem ChemicalBook CB6875459
NAI UniChem SureChEMBL SCHEMBL8187
NAI UniChem PubChem 439153
NAI UniChem Nikkaji J213.546I
NAI UniChem 'EPA CompTox Dashboard' DTXSID30889320
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NAI PA 0.866 -0.499 1.370 ETKDGv3 1
NAI O1A 1.230 0.796 2.061 ETKDGv3 2
NAI O2A -0.181 -1.366 2.380 ETKDGv3 3
NAI O5B 2.279 -1.419 1.111 ETKDGv3 4
NAI C5B 3.116 -0.712 0.227 ETKDGv3 5
NAI C4B 4.404 -1.507 -0.011 ETKDGv3 6
NAI O4B 5.192 -0.837 -0.968 ETKDGv3 7
NAI C3B 5.228 -1.678 1.264 ETKDGv3 8
NAI O3B 4.898 -2.866 1.938 ETKDGv3 9
NAI C2B 6.649 -1.707 0.744 ETKDGv3 10
NAI O2B 7.154 -3.019 0.639 ETKDGv3 11
NAI C1B 6.548 -1.039 -0.634 ETKDGv3 12
NAI N9A 7.247 0.247 -0.648 ETKDGv3 13
NAI C8A 8.043 0.759 -1.737 ETKDGv3 14
NAI N7A 8.207 2.057 -1.744 ETKDGv3 15
NAI C5A 7.487 2.530 -0.615 ETKDGv3 16
NAI C6A 7.196 3.776 -0.244 ETKDGv3 17
NAI N6A 7.724 4.912 -0.930 ETKDGv3 18
NAI N1A 6.288 3.943 0.870 ETKDGv3 19
NAI C2A 5.737 2.908 1.460 ETKDGv3 20
NAI N3A 6.025 1.565 1.005 ETKDGv3 21
NAI C4A 6.888 1.429 0.045 ETKDGv3 22
NAI O3 0.105 -0.133 -0.109 ETKDGv3 23
NAI PN -0.537 -1.582 -0.733 ETKDGv3 24
NAI O1N 0.650 -2.789 -0.792 ETKDGv3 25
NAI O2N -1.017 -1.327 -2.145 ETKDGv3 26
NAI O5D -1.848 -2.124 0.216 ETKDGv3 27
NAI C5D -2.799 -1.088 0.295 ETKDGv3 28
NAI C4D -3.995 -1.556 1.134 ETKDGv3 29
NAI O4D -4.855 -0.454 1.361 ETKDGv3 30
NAI C3D -4.780 -2.681 0.438 ETKDGv3 31
NAI O3D -5.151 -3.690 1.351 ETKDGv3 32
NAI C2D -5.974 -1.948 -0.127 ETKDGv3 33
NAI O2D -7.130 -2.747 -0.230 ETKDGv3 34
NAI C1D -6.126 -0.766 0.828 ETKDGv3 35
NAI N1N -6.694 0.397 0.134 ETKDGv3 36
NAI C2N -5.857 1.249 -0.672 ETKDGv3 37
NAI C3N -6.370 2.300 -1.333 ETKDGv3 38
NAI C7N -5.507 3.171 -2.169 ETKDGv3 39
NAI O7N -5.865 4.358 -2.399 ETKDGv3 40
NAI N7N -4.289 2.693 -2.748 ETKDGv3 41
NAI C4N -7.824 2.683 -1.156 ETKDGv3 42
NAI C5N -8.665 1.619 -0.506 ETKDGv3 43
NAI C6N -8.118 0.579 0.121 ETKDGv3 44
NAI HOA2 0.380 -1.640 3.149 ETKDGv3 45
NAI H51A 3.383 0.289 0.638 ETKDGv3 46
NAI H52A 2.614 -0.577 -0.758 ETKDGv3 47
NAI H4B 4.134 -2.507 -0.423 ETKDGv3 48
NAI H3B 5.111 -0.798 1.940 ETKDGv3 49
NAI HO3A 4.116 -2.661 2.514 ETKDGv3 50
NAI H2B 7.314 -1.135 1.429 ETKDGv3 51
NAI HO2A 6.561 -3.531 0.028 ETKDGv3 52
NAI H1B 7.004 -1.696 -1.407 ETKDGv3 53
NAI H8A 8.459 0.125 -2.508 ETKDGv3 54
NAI H61A 8.374 4.800 -1.740 ETKDGv3 55
NAI H62A 7.464 5.874 -0.622 ETKDGv3 56
NAI H2A 5.053 3.059 2.284 ETKDGv3 57
NAI HO1N 0.491 -3.345 0.011 ETKDGv3 58
NAI H51N -2.361 -0.194 0.793 ETKDGv3 59
NAI H52N -3.162 -0.801 -0.719 ETKDGv3 60
NAI H4D -3.606 -1.907 2.116 ETKDGv3 61
NAI H3D -4.201 -3.157 -0.385 ETKDGv3 62
NAI HO3N -5.596 -3.260 2.128 ETKDGv3 63
NAI H2D -5.710 -1.576 -1.143 ETKDGv3 64
NAI HO2N -7.470 -2.938 0.682 ETKDGv3 65
NAI H1D -6.780 -1.041 1.687 ETKDGv3 66
NAI H2N -4.800 1.034 -0.732 ETKDGv3 67
NAI H71N -3.675 3.348 -3.282 ETKDGv3 68
NAI H72N -4.032 1.682 -2.735 ETKDGv3 69
NAI H4N -7.881 3.602 -0.534 ETKDGv3 70
NAI H42N -8.263 2.912 -2.151 ETKDGv3 71
NAI H5N -9.741 1.740 -0.491 ETKDGv3 72
NAI H6N -8.762 -0.138 0.616 ETKDGv3 73
#