data_N5R
#
_chem_comp.id N5R
_chem_comp.name "8-(4-chloroanilino)naphthalene-1-sulfonic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 Cl N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-03-24
_chem_comp.pdbx_modified_date 2023-04-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 333.789
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N5R
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7UG1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N5R C10 C1 C 0 1 Y N N N N N 9.896 -3.093 26.271 -0.512 -2.312 -1.032 C10 N5R 1
N5R C13 C2 C 0 1 Y N N N N N 7.509 -1.602 26.235 -2.919 -1.757 0.248 C13 N5R 2
N5R C15 C3 C 0 1 Y N N N N N 6.110 -3.554 25.778 -2.373 0.616 0.258 C15 N5R 3
N5R C20 C4 C 0 1 Y N N N N N 4.992 -2.736 25.788 -3.558 0.868 0.879 C20 N5R 4
N5R C21 C5 C 0 1 Y N N N N N 5.095 -1.349 26.015 -4.439 -0.167 1.189 C21 N5R 5
N5R C22 C6 C 0 1 Y N N N N N 6.348 -0.782 26.246 -4.131 -1.460 0.896 C22 N5R 6
N5R C02 C7 C 0 1 Y N N N N N 11.993 -7.645 24.979 4.035 -0.196 0.262 C02 N5R 7
N5R C03 C8 C 0 1 Y N N N N N 11.843 -6.470 24.279 3.722 0.522 -0.878 C03 N5R 8
N5R C04 C9 C 0 1 Y N N N N N 10.767 -5.652 24.526 2.413 0.595 -1.312 C04 N5R 9
N5R C05 C10 C 0 1 Y N N N N N 11.051 -8.014 25.966 3.038 -0.844 0.971 C05 N5R 10
N5R C06 C11 C 0 1 Y N N N N N 9.973 -7.200 26.215 1.728 -0.775 0.541 C06 N5R 11
N5R C07 C12 C 0 1 Y N N N N N 9.822 -6.023 25.517 1.410 -0.054 -0.603 C07 N5R 12
N5R C09 C13 C 0 1 Y N N N N N 8.657 -3.731 26.035 -0.810 -1.002 -0.721 C09 N5R 13
N5R C11 C14 C 0 1 Y N N N N N 9.955 -1.707 26.493 -1.399 -3.337 -0.718 C11 N5R 14
N5R C12 C15 C 0 1 Y N N N N N 8.772 -0.961 26.491 -2.580 -3.078 -0.091 C12 N5R 15
N5R C14 C16 C 0 1 Y N N N N N 7.428 -2.963 26.016 -2.030 -0.703 -0.077 C14 N5R 16
N5R N08 N1 N 0 1 N N N N N N 8.618 -5.173 25.821 0.085 0.018 -1.040 N08 N5R 17
N5R O17 O1 O 0 1 N N N N N N 6.152 -5.646 24.119 -0.052 1.652 0.538 O17 N5R 18
N5R O18 O2 O 0 1 N N N N N N 4.296 -5.398 25.590 -1.369 2.146 -1.528 O18 N5R 19
N5R O19 O3 O 0 1 N N N N N N 6.399 -6.181 26.399 -1.836 3.194 0.532 O19 N5R 20
N5R S16 S1 S 0 1 N N N N N N 5.747 -5.263 25.468 -1.276 1.940 -0.125 S16 N5R 21
N5R CL01 CL1 CL 0 0 N N N N N N 13.343 -8.653 24.637 5.682 -0.291 0.802 CL01 N5R 22
N5R H1 H1 H 0 1 N N N N N N 10.805 -3.676 26.281 0.418 -2.544 -1.530 H1 N5R 23
N5R H2 H2 H 0 1 N N N N N N 4.018 -3.172 25.618 -3.819 1.883 1.136 H2 N5R 24
N5R H3 H3 H 0 1 N N N N N N 4.210 -0.730 26.010 -5.372 0.059 1.682 H3 N5R 25
N5R H4 H4 H 0 1 N N N N N N 6.436 0.278 26.433 -4.823 -2.252 1.142 H4 N5R 26
N5R H5 H5 H 0 1 N N N N N N 12.573 -6.190 23.534 4.502 1.027 -1.429 H5 N5R 27
N5R H6 H6 H 0 1 N N N N N N 10.642 -4.734 23.970 2.169 1.156 -2.202 H6 N5R 28
N5R H7 H7 H 0 1 N N N N N N 11.178 -8.931 26.522 3.286 -1.404 1.861 H7 N5R 29
N5R H8 H8 H 0 1 N N N N N N 9.243 -7.484 26.959 0.950 -1.281 1.095 H8 N5R 30
N5R H9 H9 H 0 1 N N N N N N 10.905 -1.222 26.664 -1.146 -4.355 -0.975 H9 N5R 31
N5R H10 H10 H 0 1 N N N N N N 8.806 0.101 26.682 -3.251 -3.888 0.152 H10 N5R 32
N5R H11 H11 H 0 1 N N N N N N 7.730 -5.628 25.880 -0.213 0.777 -1.565 H11 N5R 33
N5R H12 H12 H 0 1 N N N N N N 6.927 -6.804 25.913 -1.304 3.987 0.382 H12 N5R 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N5R O17 S16 DOUB N N 1
N5R C03 C04 DOUB Y N 2
N5R C03 C02 SING Y N 3
N5R C04 C07 SING Y N 4
N5R CL01 C02 SING N N 5
N5R C02 C05 DOUB Y N 6
N5R S16 O18 DOUB N N 7
N5R S16 C15 SING N N 8
N5R S16 O19 SING N N 9
N5R C07 N08 SING N N 10
N5R C07 C06 DOUB Y N 11
N5R C15 C20 DOUB Y N 12
N5R C15 C14 SING Y N 13
N5R C20 C21 SING Y N 14
N5R N08 C09 SING N N 15
N5R C05 C06 SING Y N 16
N5R C21 C22 DOUB Y N 17
N5R C14 C09 DOUB Y N 18
N5R C14 C13 SING Y N 19
N5R C09 C10 SING Y N 20
N5R C13 C22 SING Y N 21
N5R C13 C12 DOUB Y N 22
N5R C10 C11 DOUB Y N 23
N5R C12 C11 SING Y N 24
N5R C10 H1 SING N N 25
N5R C20 H2 SING N N 26
N5R C21 H3 SING N N 27
N5R C22 H4 SING N N 28
N5R C03 H5 SING N N 29
N5R C04 H6 SING N N 30
N5R C05 H7 SING N N 31
N5R C06 H8 SING N N 32
N5R C11 H9 SING N N 33
N5R C12 H10 SING N N 34
N5R N08 H11 SING N N 35
N5R O19 H12 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N5R SMILES ACDLabs 12.01 Clc1ccc(Nc2cccc3cccc(c23)S(=O)(=O)O)cc1
N5R InChI InChI 1.03 InChI=1S/C16H12ClNO3S/c17-12-7-9-13(10-8-12)18-14-5-1-3-11-4-2-6-15(16(11)14)22(19,20)21/h1-10,18H,(H,19,20,21)
N5R InChIKey InChI 1.03 OAMDGZUFHLTUKV-UHFFFAOYSA-N
N5R SMILES_CANONICAL CACTVS 3.385 O[S](=O)(=O)c1cccc2cccc(Nc3ccc(Cl)cc3)c12
N5R SMILES CACTVS 3.385 O[S](=O)(=O)c1cccc2cccc(Nc3ccc(Cl)cc3)c12
N5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc2cccc(c2c(c1)Nc3ccc(cc3)Cl)S(=O)(=O)O
N5R SMILES "OpenEye OEToolkits" 2.0.7 c1cc2cccc(c2c(c1)Nc3ccc(cc3)Cl)S(=O)(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N5R "SYSTEMATIC NAME" ACDLabs 12.01 "8-(4-chloroanilino)naphthalene-1-sulfonic acid"
N5R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[(4-chlorophenyl)amino]naphthalene-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N5R 'Create component' 2022-03-24 RCSB
N5R 'Initial release' 2023-04-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N5R C10 C 9.429 0.544 1
N5R C13 C 6.729 2.075 2
N5R C15 C 5.430 -0.175 3
N5R C20 C 4.131 0.575 4
N5R C21 C 4.131 2.075 5
N5R C22 C 5.430 2.825 6
N5R C02 C 13.305 -1.587 7
N5R C03 C 12.569 -0.279 8
N5R C04 C 11.070 -0.262 9
N5R C05 C 12.540 -2.877 10
N5R C06 C 11.040 -2.860 11
N5R C07 C 10.305 -1.552 12
N5R C09 C 8.070 -0.227 13
N5R C11 C 9.429 2.106 14
N5R C12 C 8.070 2.877 15
N5R C14 C 6.729 0.575 16
N5R N08 N 8.805 -1.534 17
N5R O17 O 3.930 -2.773 18
N5R O18 O 3.381 -0.724 19
N5R O19 O 5.979 -2.224 20
N5R S16 S 4.680 -1.474 21
N5R CL01 Cl 14.804 -1.604 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N5R O17 S16 DOUBLE NONE 1
N5R C03 C04 SINGLE NONE 2
N5R C03 C02 DOUBLE NONE 3
N5R C04 C07 DOUBLE NONE 4
N5R CL01 C02 SINGLE NONE 5
N5R C02 C05 SINGLE NONE 6
N5R S16 O18 DOUBLE NONE 7
N5R S16 C15 SINGLE NONE 8
N5R S16 O19 SINGLE NONE 9
N5R C07 N08 SINGLE NONE 10
N5R C07 C06 SINGLE NONE 11
N5R C15 C20 SINGLE NONE 12
N5R C15 C14 DOUBLE NONE 13
N5R C20 C21 DOUBLE NONE 14
N5R N08 C09 SINGLE NONE 15
N5R C05 C06 DOUBLE NONE 16
N5R C21 C22 SINGLE NONE 17
N5R C14 C09 SINGLE NONE 18
N5R C14 C13 SINGLE NONE 19
N5R C09 C10 DOUBLE NONE 20
N5R C13 C22 DOUBLE NONE 21
N5R C13 C12 SINGLE NONE 22
N5R C10 C11 SINGLE NONE 23
N5R C12 C11 DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N5R MurckoScaffold S1 scaffold c1ccc(Nc2cccc3ccccc23)cc1 InChI=1S/C16H13N/c1-2-9-14(10-3-1)17-16-12-6-8-13-7-4-5-11-15(13)16/h1-12,17H XQVWYOYUZDUNRW-UHFFFAOYSA-N
N5R napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
N5R phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N5R C10 S1 1
N5R C13 S1 1
N5R C15 S1 1
N5R C20 S1 1
N5R C21 S1 1
N5R C22 S1 1
N5R C02 S1 1
N5R C03 S1 1
N5R C04 S1 1
N5R C05 S1 1
N5R C06 S1 1
N5R C07 S1 1
N5R C09 S1 1
N5R C11 S1 1
N5R C12 S1 1
N5R C14 S1 1
N5R N08 S1 1
N5R C10 F1 1
N5R C11 F1 1
N5R C12 F1 1
N5R C13 F1 1
N5R C14 F1 1
N5R C09 F1 1
N5R C15 F1 1
N5R C20 F1 1
N5R C21 F1 1
N5R C22 F1 1
N5R C10 F2 1
N5R C09 F2 1
N5R C14 F2 1
N5R C13 F2 1
N5R C12 F2 1
N5R C11 F2 1
N5R C13 F2 2
N5R C14 F2 2
N5R C15 F2 2
N5R C20 F2 2
N5R C21 F2 2
N5R C22 F2 2
N5R C02 F2 3
N5R C03 F2 3
N5R C04 F2 3
N5R C07 F2 3
N5R C06 F2 3
N5R C05 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id N5R
_pdbe_chem_comp_rdkit_properties.exactmw 333.023
_pdbe_chem_comp_rdkit_properties.amw 333.796
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 149.656
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.186
_pdbe_chem_comp_rdkit_properties.CrippenMR 85.213
_pdbe_chem_comp_rdkit_properties.chi0v 12.031
_pdbe_chem_comp_rdkit_properties.chi1v 7.377
_pdbe_chem_comp_rdkit_properties.chi2v 3.496
_pdbe_chem_comp_rdkit_properties.chi3v 3.496
_pdbe_chem_comp_rdkit_properties.chi4v 2.373
_pdbe_chem_comp_rdkit_properties.chi0n 22.458
_pdbe_chem_comp_rdkit_properties.chi1n 11.446
_pdbe_chem_comp_rdkit_properties.chi2n 2.501
_pdbe_chem_comp_rdkit_properties.chi3n 2.501
_pdbe_chem_comp_rdkit_properties.chi4n 1.654
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.080
_pdbe_chem_comp_rdkit_properties.kappa1 6.198
_pdbe_chem_comp_rdkit_properties.kappa2 5.606
_pdbe_chem_comp_rdkit_properties.kappa3 2.919
_pdbe_chem_comp_rdkit_properties.Phi 1.579
#
_pdbe_chem_comp_external_mappings.comp_id N5R
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 167713152
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N5R C10 -0.027 -1.878 0.842 ETKDGv3 1
N5R C13 2.714 -1.121 0.898 ETKDGv3 2
N5R C15 2.133 0.918 -0.347 ETKDGv3 3
N5R C20 3.584 1.236 -0.357 ETKDGv3 4
N5R C21 4.470 0.420 0.216 ETKDGv3 5
N5R C22 4.014 -0.796 0.903 ETKDGv3 6
N5R C02 -4.754 0.390 -0.340 ETKDGv3 7
N5R C03 -4.272 0.174 -1.571 ETKDGv3 8
N5R C04 -2.831 -0.091 -1.766 ETKDGv3 9
N5R C05 -3.843 0.369 0.822 ETKDGv3 10
N5R C06 -2.538 0.125 0.649 ETKDGv3 11
N5R C07 -1.996 -0.132 -0.713 ETKDGv3 12
N5R C09 0.314 -0.804 0.103 ETKDGv3 13
N5R C11 0.945 -2.595 1.688 ETKDGv3 14
N5R C12 2.238 -2.272 1.685 ETKDGv3 15
N5R C14 1.717 -0.276 0.170 ETKDGv3 16
N5R N08 -0.591 -0.371 -0.924 ETKDGv3 17
N5R O17 1.757 3.527 -0.822 ETKDGv3 18
N5R O18 0.604 1.961 -2.303 ETKDGv3 19
N5R O19 -0.293 2.297 0.134 ETKDGv3 20
N5R S16 1.040 2.207 -0.886 ETKDGv3 21
N5R CL01 -6.463 0.706 -0.104 ETKDGv3 22
N5R H1 -1.018 -2.304 0.753 ETKDGv3 23
N5R H2 3.939 2.140 -0.835 ETKDGv3 24
N5R H3 5.524 0.667 0.204 ETKDGv3 25
N5R H4 4.738 -1.402 1.434 ETKDGv3 26
N5R H5 -4.931 0.192 -2.429 ETKDGv3 27
N5R H6 -2.460 -0.258 -2.769 ETKDGv3 28
N5R H7 -4.230 0.560 1.815 ETKDGv3 29
N5R H8 -1.881 0.136 1.509 ETKDGv3 30
N5R H9 0.608 -3.441 2.275 ETKDGv3 31
N5R H10 2.931 -2.851 2.284 ETKDGv3 32
N5R H11 -0.218 -0.345 -1.899 ETKDGv3 33
N5R H12 -0.921 2.915 -0.318 ETKDGv3 34
#