data_N2I
#
_chem_comp.id N2I
_chem_comp.name N-(naphthalen-2-yl)methanimine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H9 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-03-28
_chem_comp.pdbx_modified_date 2013-08-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 155.196
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N2I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4JJF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N2I C1B C1B C 0 1 N N N N N N -16.480 -16.069 -22.104 3.945 0.135 0.483 C1B N2I 1
N2I N1B N1B N 0 1 N N N N N N -17.522 -15.835 -22.752 3.027 0.660 -0.257 N1B N2I 2
N2I C2 C2 C 0 1 Y N N N N N -17.864 -16.164 -24.060 1.736 0.199 -0.178 C2 N2I 3
N2I C3 C3 C 0 1 Y N N N N N -19.068 -16.885 -24.172 1.490 -1.185 -0.157 C3 N2I 4
N2I C4 C4 C 0 1 Y N N N N N -19.543 -17.281 -25.421 0.222 -1.665 -0.080 C4 N2I 5
N2I C4A C4A C 0 1 Y N N N N N -18.809 -16.947 -26.561 -0.865 -0.775 -0.019 C4A N2I 6
N2I C8A C8A C 0 1 Y N N N N N -17.602 -16.208 -26.449 -0.629 0.624 -0.039 C8A N2I 7
N2I C1 C1 C 0 1 Y N N N N N -17.125 -15.793 -25.195 0.688 1.101 -0.115 C1 N2I 8
N2I C5 C5 C 0 1 Y N N N N N -19.305 -17.348 -27.812 -2.186 -1.247 0.056 C5 N2I 9
N2I C6 C6 C 0 1 Y N N N N N -18.574 -17.023 -28.958 -3.218 -0.361 0.108 C6 N2I 10
N2I C7 C7 C 0 1 Y N N N N N -17.374 -16.299 -28.845 -2.986 1.013 0.088 C7 N2I 11
N2I C8 C8 C 0 1 Y N N N N N -16.881 -15.889 -27.604 -1.720 1.508 0.022 C8 N2I 12
N2I H1 H1 H 0 1 N N N N N N -15.667 -16.610 -22.566 3.698 -0.666 1.164 H1 N2I 13
N2I H2 H2 H 0 1 N N N N N N -16.392 -15.730 -21.082 4.962 0.494 0.418 H2 N2I 14
N2I H3 H3 H 0 1 N N N N N N -19.628 -17.133 -23.283 2.319 -1.875 -0.204 H3 N2I 15
N2I H4 H4 H 0 1 N N N N N N -20.465 -17.838 -25.506 0.049 -2.731 -0.065 H4 N2I 16
N2I H5 H5 H 0 1 N N N N N N -16.221 -15.209 -25.107 0.883 2.163 -0.131 H5 N2I 17
N2I H6 H6 H 0 1 N N N N N N -20.232 -17.896 -27.887 -2.382 -2.309 0.072 H6 N2I 18
N2I H7 H7 H 0 1 N N N N N N -18.931 -17.328 -29.931 -4.232 -0.729 0.161 H7 N2I 19
N2I H8 H8 H 0 1 N N N N N N -16.820 -16.054 -29.739 -3.823 1.694 0.131 H8 N2I 20
N2I H9 H9 H 0 1 N N N N N N -15.957 -15.334 -27.538 -1.555 2.576 0.008 H9 N2I 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N2I C6 C7 DOUB Y N 1
N2I C6 C5 SING Y N 2
N2I C7 C8 SING Y N 3
N2I C5 C4A DOUB Y N 4
N2I C8 C8A DOUB Y N 5
N2I C4A C8A SING Y N 6
N2I C4A C4 SING Y N 7
N2I C8A C1 SING Y N 8
N2I C4 C3 DOUB Y N 9
N2I C1 C2 DOUB Y N 10
N2I C3 C2 SING Y N 11
N2I C2 N1B SING N N 12
N2I N1B C1B DOUB N N 13
N2I C1B H1 SING N N 14
N2I C1B H2 SING N N 15
N2I C3 H3 SING N N 16
N2I C4 H4 SING N N 17
N2I C1 H5 SING N N 18
N2I C5 H6 SING N N 19
N2I C6 H7 SING N N 20
N2I C7 H8 SING N N 21
N2I C8 H9 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N2I SMILES ACDLabs 12.01 N(=C)\c2ccc1c(cccc1)c2
N2I InChI InChI 1.03 InChI=1S/C11H9N/c1-12-11-7-6-9-4-2-3-5-10(9)8-11/h2-8H,1H2
N2I InChIKey InChI 1.03 FGRABSHVUNBHIE-UHFFFAOYSA-N
N2I SMILES_CANONICAL CACTVS 3.370 C=Nc1ccc2ccccc2c1
N2I SMILES CACTVS 3.370 C=Nc1ccc2ccccc2c1
N2I SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C=Nc1ccc2ccccc2c1
N2I SMILES "OpenEye OEToolkits" 1.7.6 C=Nc1ccc2ccccc2c1
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N2I "SYSTEMATIC NAME" ACDLabs 12.01 N-(naphthalen-2-yl)methanimine
N2I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-naphthalen-2-ylmethanimine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N2I 'Create component' 2013-03-28 RCSB
N2I 'Initial release' 2013-08-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N2I C1B C 3.805 -0.750 1
N2I N1B N 5.104 -1.500 2
N2I C2 C 6.404 -0.750 3
N2I C3 C 6.404 0.750 4
N2I C4 C 7.702 1.500 5
N2I C4A C 9.002 0.750 6
N2I C8A C 9.002 -0.750 7
N2I C1 C 7.702 -1.500 8
N2I C5 C 10.342 1.552 9
N2I C6 C 11.701 0.781 10
N2I C7 C 11.701 -0.781 11
N2I C8 C 10.342 -1.552 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N2I C6 C7 DOUBLE NONE 1
N2I C6 C5 SINGLE NONE 2
N2I C7 C8 SINGLE NONE 3
N2I C5 C4A DOUBLE NONE 4
N2I C8 C8A DOUBLE NONE 5
N2I C4A C8A SINGLE NONE 6
N2I C4A C4 SINGLE NONE 7
N2I C8A C1 SINGLE NONE 8
N2I C4 C3 DOUBLE NONE 9
N2I C1 C2 DOUBLE NONE 10
N2I C3 C2 SINGLE NONE 11
N2I C2 N1B SINGLE NONE 12
N2I N1B C1B DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N2I MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
N2I napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
N2I phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N2I C2 S1 1
N2I C3 S1 1
N2I C4 S1 1
N2I C4A S1 1
N2I C8A S1 1
N2I C1 S1 1
N2I C5 S1 1
N2I C6 S1 1
N2I C7 S1 1
N2I C8 S1 1
N2I C2 F1 1
N2I C3 F1 1
N2I C4 F1 1
N2I C4A F1 1
N2I C8A F1 1
N2I C1 F1 1
N2I C8 F1 1
N2I C7 F1 1
N2I C6 F1 1
N2I C5 F1 1
N2I C2 F2 1
N2I C1 F2 1
N2I C8A F2 1
N2I C4A F2 1
N2I C4 F2 1
N2I C3 F2 1
N2I C4A F2 2
N2I C5 F2 2
N2I C6 F2 2
N2I C7 F2 2
N2I C8 F2 2
N2I C8A F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id N2I
_pdbe_chem_comp_rdkit_properties.exactmw 155.073
_pdbe_chem_comp_rdkit_properties.amw 155.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 84.018
_pdbe_chem_comp_rdkit_properties.tpsa 12.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.363
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.127
_pdbe_chem_comp_rdkit_properties.chi0v 5.947
_pdbe_chem_comp_rdkit_properties.chi1v 3.197
_pdbe_chem_comp_rdkit_properties.chi2v 1.349
_pdbe_chem_comp_rdkit_properties.chi3v 1.349
_pdbe_chem_comp_rdkit_properties.chi4v 0.827
_pdbe_chem_comp_rdkit_properties.chi0n 14.947
_pdbe_chem_comp_rdkit_properties.chi1n 7.697
_pdbe_chem_comp_rdkit_properties.chi2n 1.349
_pdbe_chem_comp_rdkit_properties.chi3n 1.349
_pdbe_chem_comp_rdkit_properties.chi4n 0.827
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 2.194
_pdbe_chem_comp_rdkit_properties.kappa2 2.779
_pdbe_chem_comp_rdkit_properties.kappa3 1.096
_pdbe_chem_comp_rdkit_properties.Phi 0.508
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N2I UniChem ZINC ZINC000095920624
N2I UniChem SureChEMBL SCHEMBL24713367
N2I UniChem PubChem 12346461
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N2I C1B 4.126 0.076 0.781 ETKDGv3 1
N2I N1B 2.964 -0.216 1.279 ETKDGv3 2
N2I C2 1.699 -0.115 0.603 ETKDGv3 3
N2I C3 1.604 0.067 -0.879 ETKDGv3 4
N2I C4 0.424 0.160 -1.505 ETKDGv3 5
N2I C4A -0.833 0.076 -0.743 ETKDGv3 6
N2I C8A -0.751 -0.125 0.724 ETKDGv3 7
N2I C1 0.584 -0.219 1.344 ETKDGv3 8
N2I C5 -2.031 0.170 -1.342 ETKDGv3 9
N2I C6 -3.267 0.073 -0.536 ETKDGv3 10
N2I C7 -3.193 -0.109 0.789 ETKDGv3 11
N2I C8 -1.875 -0.213 1.452 ETKDGv3 12
N2I H1 4.244 0.470 -0.218 ETKDGv3 13
N2I H2 5.010 -0.047 1.390 ETKDGv3 14
N2I H3 2.497 0.106 -1.486 ETKDGv3 15
N2I H4 0.400 0.287 -2.581 ETKDGv3 16
N2I H5 0.664 -0.364 2.416 ETKDGv3 17
N2I H6 -2.106 0.315 -2.413 ETKDGv3 18
N2I H7 -4.231 0.149 -1.020 ETKDGv3 19
N2I H8 -4.098 -0.181 1.378 ETKDGv3 20
N2I H9 -1.832 -0.360 2.525 ETKDGv3 21
#