data_MSM
#
_chem_comp.id MSM
_chem_comp.name (METHYLSULFANYL)METHANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C2 H6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-11-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 62.134
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MSM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MSM CB1 CB1 C 0 1 N N N N N N -4.010 12.981 11.808 1.390 -0.579 0.000 CB1 MSM 1
MSM SG1 SG1 S 0 1 N N N N N N -3.422 12.907 10.091 0.000 0.587 0.000 SG1 MSM 2
MSM CD1 CD1 C 0 1 N N N N N N -2.032 11.816 10.491 -1.390 -0.579 0.000 CD1 MSM 3
MSM HB11 1HB1 H 0 0 N N N N N N -4.631 12.098 12.021 1.338 -1.206 0.890 HB11 MSM 4
MSM HB12 2HB1 H 0 0 N N N N N N -4.607 13.893 11.952 1.338 -1.206 -0.890 HB12 MSM 5
MSM HB13 3HB1 H 0 0 N N N N N N -3.148 12.996 12.491 2.329 -0.025 0.000 HB13 MSM 6
MSM HD11 1HD1 H 0 0 N N N N N N -2.414 10.878 10.920 -1.338 -1.206 -0.890 HD11 MSM 7
MSM HD12 2HD1 H 0 0 N N N N N N -1.374 12.312 11.220 -1.338 -1.206 0.890 HD12 MSM 8
MSM HD13 3HD1 H 0 0 N N N N N N -1.464 11.595 9.576 -2.329 -0.025 0.000 HD13 MSM 9
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MSM CB1 SG1 SING N N 1
MSM CB1 HB11 SING N N 2
MSM CB1 HB12 SING N N 3
MSM CB1 HB13 SING N N 4
MSM SG1 CD1 SING N N 5
MSM CD1 HD11 SING N N 6
MSM CD1 HD12 SING N N 7
MSM CD1 HD13 SING N N 8
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MSM SMILES ACDLabs 10.04 sulfanediyldimethane
MSM SMILES_CANONICAL CACTVS 3.341 CSC
MSM SMILES CACTVS 3.341 CSC
MSM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSC
MSM SMILES "OpenEye OEToolkits" 1.5.0 CSC
MSM InChI InChI 1.03 InChI=1S/C2H6S/c1-3-2/h1-2H3
MSM InChIKey InChI 1.03 QMMFVYPAHWMCMS-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MSM "SYSTEMATIC NAME" ACDLabs 10.04 "dimethyl sulfide"
MSM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 methylsulfanylmethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MSM 'Create component' 2004-11-02 RCSB
MSM 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MSM CB1 C 5.598 0.375 1
MSM SG1 S 4.299 -0.375 2
MSM CD1 C 3.000 0.375 3
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MSM CB1 SG1 SINGLE NONE 1
MSM SG1 CD1 SINGLE NONE 2
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id MSM
_pdbe_chem_comp_rdkit_properties.exactmw 62.019
_pdbe_chem_comp_rdkit_properties.amw 62.137
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 3
_pdbe_chem_comp_rdkit_properties.NumAtoms 9
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 33.657
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.979
_pdbe_chem_comp_rdkit_properties.CrippenMR 19.439
_pdbe_chem_comp_rdkit_properties.chi0v 2.225
_pdbe_chem_comp_rdkit_properties.chi1v 1.225
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 7.408
_pdbe_chem_comp_rdkit_properties.chi1n 3.408
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.350
_pdbe_chem_comp_rdkit_properties.kappa1 0.265
_pdbe_chem_comp_rdkit_properties.kappa2 2.350
_pdbe_chem_comp_rdkit_properties.kappa3 2.350
_pdbe_chem_comp_rdkit_properties.Phi 0.208
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MSM UniChem 'KEGG LIGAND' C00580
MSM UniChem ChEBI 17437
MSM UniChem fdasrs QS3J7O7L3U
MSM UniChem HMDB HMDB0002303
MSM UniChem NMRShiftDB 10016667
MSM UniChem Nikkaji J1.300.429C
MSM UniChem MetaboLights MTBLC17437
MSM UniChem BRENDA 2959
MSM UniChem BRENDA 3812
MSM UniChem Rhea 17437
MSM UniChem ChemicalBook CB6478393
MSM UniChem CCDC PADQAN
MSM UniChem eMolecules 493755
MSM UniChem SureChEMBL SCHEMBL1618
MSM UniChem 'PubChem TPHARMA' 15296871
MSM UniChem PubChem 1068
MSM UniChem Mcule MCULE-4525381422
MSM UniChem ACTor 31533-72-9
MSM UniChem ACTor 75-18-3
MSM UniChem Nikkaji J1.443E
MSM UniChem 'EPA CompTox Dashboard' DTXSID9026398
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MSM CB1 1.331 0.070 -0.239 ETKDGv3 1
MSM SG1 -0.102 0.566 -1.245 ETKDGv3 2
MSM CD1 -1.336 -0.044 -0.053 ETKDGv3 3
MSM HB11 2.263 0.347 -0.774 ETKDGv3 4
MSM HB12 1.323 -1.028 -0.078 ETKDGv3 5
MSM HB13 1.310 0.593 0.740 ETKDGv3 6
MSM HD11 -2.352 0.149 -0.453 ETKDGv3 7
MSM HD12 -1.212 -1.137 0.098 ETKDGv3 8
MSM HD13 -1.224 0.485 0.916 ETKDGv3 9
#