data_MLU
#
_chem_comp.id MLU
_chem_comp.name N-methyl-D-leucine
_chem_comp.type 'D-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C7 H15 N O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-08-06
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 145.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MLU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HHU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MLU N N N 0 1 N N N Y Y N 20.706 25.475 26.367 0.515 -1.416 -0.504 N MLU 1
MLU CN CN C 0 1 N N N N N N 20.467 25.413 24.873 1.192 -2.393 0.359 CN MLU 2
MLU CA CA C 0 1 N N R Y N N 19.538 26.025 27.091 0.380 -0.119 0.173 CA MLU 3
MLU C C C 0 1 N N N Y N Y 18.375 25.092 26.798 1.649 0.674 -0.004 C MLU 4
MLU O O O 0 1 N N N Y N Y 18.497 23.908 27.080 2.358 0.474 -0.962 O MLU 5
MLU CB CB C 0 1 N N N N N N 19.908 25.861 28.578 -0.794 0.653 -0.432 CB MLU 6
MLU CG CG C 0 1 N N N N N N 18.805 25.930 29.579 -2.098 -0.092 -0.143 CG MLU 7
MLU CD1 CD1 C 0 1 N N N N N N 19.254 25.568 30.951 -2.355 -0.103 1.366 CD1 MLU 8
MLU CD2 CD2 C 0 1 N N N N N N 18.266 27.236 29.649 -3.256 0.612 -0.853 CD2 MLU 9
MLU OXT OXT O 0 1 N Y N Y N Y 17.298 25.639 26.242 1.992 1.604 0.901 OXT MLU 10
MLU H H H 0 1 N Y N Y Y N 20.889 24.551 26.704 0.997 -1.316 -1.384 H MLU 11
MLU HCN1 HCN1 H 0 0 N N N N N N 21.357 25.000 24.376 1.209 -3.364 -0.135 HCN1 MLU 12
MLU HCN2 HCN2 H 0 0 N N N N N N 19.600 24.769 24.667 2.214 -2.064 0.548 HCN2 MLU 13
MLU HCN3 HCN3 H 0 0 N N N N N N 20.271 26.426 24.491 0.656 -2.476 1.305 HCN3 MLU 14
MLU HA HA H 0 1 N N N Y N N 19.318 27.070 26.829 0.199 -0.282 1.236 HA MLU 15
MLU HB2 HB2 H 0 1 N N N N N N 20.392 24.879 28.690 -0.839 1.649 0.008 HB2 MLU 16
MLU HB3 HB3 H 0 1 N N N N N N 20.627 26.655 28.827 -0.655 0.738 -1.510 HB3 MLU 17
MLU HXT HXT H 0 1 N Y N Y N Y 16.640 24.969 26.098 2.814 2.087 0.744 HXT MLU 18
MLU HG HG H 0 1 N N N N N N 18.017 25.226 29.275 -2.019 -1.117 -0.505 HG MLU 19
MLU HD11 HD11 H 0 0 N N N N N N 18.404 25.636 31.645 -2.434 0.922 1.728 HD11 MLU 20
MLU HD12 HD12 H 0 0 N N N N N N 19.645 24.540 30.949 -3.285 -0.634 1.572 HD12 MLU 21
MLU HD13 HD13 H 0 0 N N N N N N 20.046 26.261 31.272 -1.530 -0.604 1.872 HD13 MLU 22
MLU HD21 HD21 H 0 0 N N N N N N 17.456 27.260 30.393 -3.073 0.619 -1.927 HD21 MLU 23
MLU HD22 HD22 H 0 0 N N N N N N 19.055 27.943 29.944 -4.185 0.081 -0.646 HD22 MLU 24
MLU HD23 HD23 H 0 0 N N N N N N 17.868 27.521 28.664 -3.335 1.637 -0.491 HD23 MLU 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MLU N CN SING N N 1
MLU N CA SING N N 2
MLU CA C SING N N 3
MLU CA CB SING N N 4
MLU C O DOUB N N 5
MLU C OXT SING N N 6
MLU CB CG SING N N 7
MLU CG CD1 SING N N 8
MLU CG CD2 SING N N 9
MLU N H SING N N 10
MLU CN HCN1 SING N N 11
MLU CN HCN2 SING N N 12
MLU CN HCN3 SING N N 13
MLU CA HA SING N N 14
MLU CB HB2 SING N N 15
MLU CB HB3 SING N N 16
MLU OXT HXT SING N N 17
MLU CG HG SING N N 18
MLU CD1 HD11 SING N N 19
MLU CD1 HD12 SING N N 20
MLU CD1 HD13 SING N N 21
MLU CD2 HD21 SING N N 22
MLU CD2 HD22 SING N N 23
MLU CD2 HD23 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MLU InChI InChI 1.03 'InChI=1S/C7H15NO2/c1-5(2)4-6(8-3)7(9)10/h5-6,8H,4H2,1-3H3,(H,9,10)/t6-/m1/s1'
MLU InChIKey InChI 1.03 XJODGRWDFZVTKW-ZCFIWIBFSA-N
MLU SMILES ACDLabs 12.01 'O=C(O)C(NC)CC(C)C'
MLU SMILES_CANONICAL CACTVS 3.370 'CN[C@H](CC(C)C)C(O)=O'
MLU SMILES CACTVS 3.370 'CN[CH](CC(C)C)C(O)=O'
MLU SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'CC(C)C[C@H](C(=O)O)NC'
MLU SMILES 'OpenEye OEToolkits' 1.7.6 'CC(C)CC(C(=O)O)NC'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MLU 'SYSTEMATIC NAME' ACDLabs 12.01 N-methyl-D-leucine
MLU 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '(2R)-4-methyl-2-(methylamino)pentanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MLU 'Create component' 2010-08-06 EBI
MLU 'Modify descriptor' 2011-06-04 RCSB
MLU 'Modify name' 2012-06-26 EBI
MLU 'Modify parent residue' 2012-06-26 EBI
MLU 'Modify backbone' 2023-11-03 PDBE
MLU 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id MLU
_pdbx_chem_comp_pcm.modified_residue_id DLE
_pdbx_chem_comp_pcm.type Methylation
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id MLU
_pdbe_chem_comp_drugbank_details.drugbank_id DB04487
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N-Methylleucine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 31321-74-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id MLU
_pdbe_chem_comp_synonyms.name N-Methylleucine
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id MLU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04487
_pdbe_chem_comp_drugbank_classification.parent 'Leucine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as leucine and derivatives. These are compounds containing leucine or a derivative thereof resulting from reaction of leucine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id MLU
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04487
_pdbe_chem_comp_drugbank_targets.name 'C-X-C motif chemokine 10'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P02778
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MLU N N 4.299 1.500 1
MLU CN C 3.000 0.750 2
MLU CA C 5.598 0.750 3
MLU C C 6.897 1.500 4
MLU O O 8.196 0.750 5
MLU CB C 5.598 -0.750 6
MLU CG C 6.897 -1.500 7
MLU CD1 C 6.897 -3.000 8
MLU CD2 C 8.196 -0.750 9
MLU OXT O 6.897 3.000 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MLU N CN SINGLE NONE 1
MLU N CA SINGLE NONE 2
MLU CA C SINGLE NONE 3
MLU CA CB SINGLE BEGINWEDGE 4
MLU C O DOUBLE NONE 5
MLU C OXT SINGLE NONE 6
MLU CB CG SINGLE NONE 7
MLU CG CD1 SINGLE NONE 8
MLU CG CD2 SINGLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id MLU
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MLU O F1 1
MLU C F1 1
MLU CA F1 1
MLU N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MLU
_pdbe_chem_comp_rdkit_properties.exactmw 145.110
_pdbe_chem_comp_rdkit_properties.amw 145.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.654
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.705
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.939
_pdbe_chem_comp_rdkit_properties.chi0v 4.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.105
_pdbe_chem_comp_rdkit_properties.chi2v 0.549
_pdbe_chem_comp_rdkit_properties.chi3v 0.549
_pdbe_chem_comp_rdkit_properties.chi4v 0.243
_pdbe_chem_comp_rdkit_properties.chi0n 19.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.461
_pdbe_chem_comp_rdkit_properties.chi2n 0.549
_pdbe_chem_comp_rdkit_properties.chi3n 0.549
_pdbe_chem_comp_rdkit_properties.chi4n 0.243
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.221
_pdbe_chem_comp_rdkit_properties.kappa2 4.278
_pdbe_chem_comp_rdkit_properties.kappa3 3.455
_pdbe_chem_comp_rdkit_properties.Phi 0.522
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MLU UniChem DrugBank DB04487
MLU UniChem ZINC ZINC000000403026
MLU UniChem fdasrs RS2PMV5S1P
MLU UniChem 'Probes And Drugs' PD006187
MLU UniChem CCDC MUWSOO
MLU UniChem 'EPA CompTox Dashboard' DTXSID20426228
MLU UniChem SureChEMBL SCHEMBL93453
MLU UniChem PubChem 6951122
MLU UniChem PubChem 6951123
MLU UniChem Nikkaji J1.298.025F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MLU N 1.500 -0.861 -0.355 ETKDGv3 1
MLU CN 2.197 0.098 -1.221 ETKDGv3 2
MLU CA 0.774 -0.240 0.774 ETKDGv3 3
MLU C 1.697 0.541 1.680 ETKDGv3 4
MLU O 1.850 1.784 1.530 ETKDGv3 5
MLU CB -0.443 0.599 0.311 ETKDGv3 6
MLU CG -1.399 -0.151 -0.650 ETKDGv3 7
MLU CD1 -2.071 -1.354 0.028 ETKDGv3 8
MLU CD2 -2.468 0.813 -1.180 ETKDGv3 9
MLU OXT 2.421 -0.129 2.661 ETKDGv3 10
MLU H 2.215 -1.520 0.034 ETKDGv3 11
MLU HCN1 1.481 0.801 -1.693 ETKDGv3 12
MLU HCN2 2.974 0.660 -0.661 ETKDGv3 13
MLU HCN3 2.702 -0.456 -2.040 ETKDGv3 14
MLU HA 0.371 -1.065 1.401 ETKDGv3 15
MLU HB2 -1.014 0.926 1.209 ETKDGv3 16
MLU HB3 -0.085 1.525 -0.188 ETKDGv3 17
MLU HXT 3.059 0.371 3.268 ETKDGv3 18
MLU HG -0.823 -0.520 -1.527 ETKDGv3 19
MLU HD11 -2.820 -1.811 -0.653 ETKDGv3 20
MLU HD12 -1.323 -2.137 0.267 ETKDGv3 21
MLU HD13 -2.585 -1.042 0.963 ETKDGv3 22
MLU HD21 -3.135 0.291 -1.900 ETKDGv3 23
MLU HD22 -3.084 1.212 -0.346 ETKDGv3 24
MLU HD23 -1.991 1.663 -1.713 ETKDGv3 25
#