data_M10
#
_chem_comp.id M10
_chem_comp.name "(mu3-oxo)-tris(mu2-oxo)-nonakisoxo-trimolybdenum (VI)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "Mo3 O13"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Trimolybdate [Mo(VI)3O13]8-"
_chem_comp.pdbx_formal_charge -8
_chem_comp.pdbx_initial_date 2014-05-22
_chem_comp.pdbx_modified_date 2025-11-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 495.812
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M10
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NDO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M10 O1 O1 O -1 1 N Y N N N N 54.985 31.722 42.761 -3.408 1.355 0.685 O1 M10 1
M10 O2 O2 O -1 1 N Y N N N N 60.635 31.757 42.761 2.856 1.519 0.701 O2 M10 2
M10 O3 O3 O -1 1 N Y N N N N 57.780 36.633 42.761 1.621 -2.845 -1.404 O3 M10 3
M10 O4 O4 O 0 1 N N N N N N 57.813 33.374 42.961 1.488 0.043 -1.367 O4 M10 4
M10 MO1 MO1 MO 0 0 N N N N N N 55.830 33.467 41.669 -2.084 -0.076 -0.070 MO1 M10 5
M10 O5 O5 O -1 1 N N N N N N 54.664 33.340 40.413 -1.769 -0.755 1.785 O5 M10 6
M10 MO2 MO2 MO 0 0 N N N N N N 58.702 31.617 41.669 0.914 1.449 -0.071 MO2 M10 7
M10 O6 O6 O 0 1 N N N N N N 56.991 31.985 40.909 -0.938 1.382 -0.807 O6 M10 8
M10 MO3 MO3 MO 0 0 N N N N N N 58.868 35.029 41.669 1.017 -1.378 -0.045 MO3 M10 9
M10 O7 O7 O -1 1 N N N N N N 55.089 34.356 42.962 -3.559 -0.846 -1.180 O7 M10 10
M10 O8 O8 O -1 1 N N N N N N 59.395 30.670 40.413 0.344 2.856 1.231 O8 M10 11
M10 O9 O9 O 0 1 N N N N N N 59.405 33.363 40.909 0.442 0.029 1.250 O9 M10 12
M10 O10 O10 O -1 1 N N N N N N 58.302 30.530 42.962 1.389 2.868 -1.398 O10 M10 13
M10 O11 O11 O 0 1 N N N N N N 59.341 36.102 40.413 0.549 -2.799 1.283 O11 M10 14
M10 O12 O12 O 0 1 N N N N N N 57.004 34.764 40.909 -0.835 -1.459 -0.782 O12 M10 15
M10 O13 O13 O -1 1 N N N N N N 60.009 35.226 42.962 2.874 -1.301 0.695 O13 M10 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M10 MO1 O1 SING N N 1
M10 MO1 O7 SING N N 2
M10 O5 MO1 SING N N 3
M10 MO2 O2 SING N N 4
M10 MO2 O4 SING N N 5
M10 MO2 O10 SING N N 6
M10 O6 MO1 SING N N 7
M10 O6 MO2 SING N N 8
M10 MO3 O3 SING N N 9
M10 MO3 O4 SING N N 10
M10 MO3 O13 SING N N 11
M10 O8 MO2 SING N N 12
M10 O9 MO2 SING N N 13
M10 O9 MO3 SING N N 14
M10 O11 MO3 DOUB N N 15
M10 O12 MO1 SING N N 16
M10 O12 MO3 SING N N 17
M10 O4 MO1 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M10 InChI InChI 1.03 InChI=1S/3Mo.13O/q;;;;;;;;8*-1
M10 InChIKey InChI 1.03 HGNGIYFURFJYFJ-UHFFFAOYSA-N
M10 SMILES_CANONICAL CACTVS 3.370 "[O-][Mo]|12([O-])([O-])O[Mo]3([O-])([O-])([O-])O|1[Mo]([O-])([O-])(=O)(O2)O3"
M10 SMILES CACTVS 3.370 "[O-][Mo]|12([O-])([O-])O[Mo]3([O-])([O-])([O-])O|1[Mo]([O-])([O-])(=O)(O2)O3"
M10 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[O-][Mo]12(O[Mo]3(O1[Mo](=O)(O2)(O3)([O-])[O-])([O-])([O-])[O-])([O-])[O-]"
M10 SMILES "OpenEye OEToolkits" 1.7.6 "[O-][Mo]12(O[Mo]3(O1[Mo](=O)(O2)(O3)([O-])[O-])([O-])([O-])[O-])([O-])[O-]"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M10 'Create component' 2014-05-22 RCSB
M10 'Initial release' 2014-08-13 RCSB
M10 'Modify synonyms' 2021-03-01 PDBE
M10 'Modify leaving atom flag' 2025-11-11 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id M10
_pdbx_chem_comp_synonyms.name "Trimolybdate [Mo(VI)3O13]8-"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id M10
_pdbe_chem_comp_synonyms.name 'Trimolybdate [Mo(VI)3O13]8-'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M10 O1 O 2.469 -0.059 1
M10 O2 O -1.307 -2.108 2
M10 O3 O -1.173 2.141 3
M10 O4 O 0.013 -0.008 4
M10 MO1 Mo 1.074 -0.618 5
M10 O5 O 1.351 -2.092 6
M10 MO2 Mo -1.050 -0.628 7
M10 O6 O 0.022 -1.826 8
M10 MO3 Mo 0.005 1.215 9
M10 O7 O 2.396 -1.332 10
M10 O8 O -2.544 -0.020 11
M10 O9 O -1.569 0.891 12
M10 O10 O -2.385 -1.358 13
M10 O11 O 1.146 2.186 14
M10 O12 O 1.582 0.906 15
M10 O13 O -0.032 2.711 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M10 MO1 O1 SINGLE NONE 1
M10 MO1 O7 SINGLE NONE 2
M10 O5 MO1 SINGLE NONE 3
M10 MO2 O2 SINGLE NONE 4
M10 MO2 O4 SINGLE NONE 5
M10 MO2 O10 SINGLE NONE 6
M10 O6 MO1 SINGLE NONE 7
M10 O6 MO2 SINGLE NONE 8
M10 MO3 O3 SINGLE NONE 9
M10 O4 MO3 DATIVE NONE 10
M10 MO3 O13 SINGLE NONE 11
M10 O8 MO2 SINGLE NONE 12
M10 O9 MO2 SINGLE NONE 13
M10 O9 MO3 SINGLE NONE 14
M10 O11 MO3 DOUBLE NONE 15
M10 O12 MO1 SINGLE NONE 16
M10 O12 MO3 SINGLE NONE 17
M10 O4 MO1 SINGLE NONE 18
#
_pdbe_chem_comp_substructure.comp_id M10
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles '[O]=[Mo]12<-[O]3[Mo]([O][Mo]3[O]1)[O]2'
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/3Mo.5O
_pdbe_chem_comp_substructure.substructure_inchikeys PEDGDQBDLNAKPU-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M10 O4 S1 1
M10 MO1 S1 1
M10 MO2 S1 1
M10 O6 S1 1
M10 MO3 S1 1
M10 O9 S1 1
M10 O11 S1 1
M10 O12 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M10
_pdbe_chem_comp_rdkit_properties.exactmw 501.655
_pdbe_chem_comp_rdkit_properties.amw 495.807
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 86.426
_pdbe_chem_comp_rdkit_properties.tpsa 231.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP -9.912
_pdbe_chem_comp_rdkit_properties.CrippenMR 5.027
_pdbe_chem_comp_rdkit_properties.chi0v 12.553
_pdbe_chem_comp_rdkit_properties.chi1v 17.748
_pdbe_chem_comp_rdkit_properties.chi2v 58.333
_pdbe_chem_comp_rdkit_properties.chi3v 58.333
_pdbe_chem_comp_rdkit_properties.chi4v 81.205
_pdbe_chem_comp_rdkit_properties.chi0n 6.532
_pdbe_chem_comp_rdkit_properties.chi1n 3.000
_pdbe_chem_comp_rdkit_properties.chi2n 1.667
_pdbe_chem_comp_rdkit_properties.chi3n 1.667
_pdbe_chem_comp_rdkit_properties.chi4n 1.818
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 1.385
_pdbe_chem_comp_rdkit_properties.kappa1 12.420
_pdbe_chem_comp_rdkit_properties.kappa2 1.413
_pdbe_chem_comp_rdkit_properties.kappa3 0.845
_pdbe_chem_comp_rdkit_properties.Phi 1.097
#
#