data_M0F
#
_chem_comp.id M0F
_chem_comp.name "4-((6-hydroxybenzofuran-3-yl)methyl)benzoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-07-18
_chem_comp.pdbx_modified_date 2023-01-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 268.264
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M0F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8AFR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M0F C6 C1 C 0 1 Y N N N N N 116.538 203.851 -0.646 1.152 1.002 0.939 C6 M0F 1
M0F C5 C2 C 0 1 N N N N N N 117.850 204.500 -0.261 -0.079 1.704 1.452 C5 M0F 2
M0F C4 C3 C 0 1 Y N N N N N 117.964 205.290 1.017 -1.208 1.519 0.470 C4 M0F 3
M0F C2 C4 C 0 1 Y N N N N N 116.000 204.610 2.615 -2.271 -0.810 1.105 C2 M0F 4
M0F O2 O1 O 0 1 N N N N N N 112.807 201.880 -3.362 4.823 -2.136 -0.218 O2 M0F 5
M0F C C5 C 0 1 Y N N N N N 116.161 205.670 4.778 -4.122 -1.411 -0.289 C M0F 6
M0F O O2 O 0 1 N N N N N N 115.677 205.861 6.041 -5.100 -2.298 -0.614 O M0F 7
M0F C1 C6 C 0 1 Y N N N N N 115.503 204.813 3.894 -3.259 -1.692 0.767 C1 M0F 8
M0F C10 C7 C 0 1 N N N N N N 113.317 201.544 -2.300 4.621 -0.974 -0.508 C10 M0F 9
M0F C11 C8 C 0 1 Y N N N N N 114.816 203.531 -2.303 2.504 -0.970 0.804 C11 M0F 10
M0F C12 C9 C 0 1 Y N N N N N 115.866 204.266 -1.785 1.379 -0.322 1.271 C12 M0F 11
M0F C13 C10 C 0 1 Y N N N N N 118.961 206.145 1.285 -1.571 2.361 -0.506 C13 M0F 12
M0F C14 C11 C 0 1 Y N N N N N 117.778 206.111 3.114 -2.994 0.669 -0.678 C14 M0F 13
M0F C15 C12 C 0 1 Y N N N N N 117.316 206.335 4.388 -3.993 -0.238 -1.010 C15 M0F 14
M0F C3 C13 C 0 1 Y N N N N N 117.160 205.263 2.211 -2.128 0.377 0.389 C3 M0F 15
M0F C7 C14 C 0 1 Y N N N N N 116.086 202.709 0.002 2.047 1.684 0.133 C7 M0F 16
M0F C8 C15 C 0 1 Y N N N N N 115.029 201.972 -0.506 3.176 1.048 -0.340 C8 M0F 17
M0F C9 C16 C 0 1 Y N N N N N 114.393 202.364 -1.680 3.414 -0.287 -0.005 C9 M0F 18
M0F O1 O3 O 0 1 N N N N N N 112.977 200.465 -1.649 5.497 -0.312 -1.288 O1 M0F 19
M0F O3 O4 O 0 1 Y N N N N N 118.897 206.669 2.553 -2.622 1.863 -1.181 O3 M0F 20
M0F H1 H1 H 0 1 N N N N N N 118.595 203.693 -0.201 -0.363 1.281 2.416 H1 M0F 21
M0F H2 H2 H 0 1 N N N N N N 118.116 205.185 -1.080 0.130 2.767 1.569 H2 M0F 22
M0F H3 H3 H 0 1 N N N N N N 115.487 203.946 1.934 -1.604 -1.033 1.925 H3 M0F 23
M0F H4 H4 H 0 1 N N N N N N 116.239 206.469 6.507 -5.935 -2.150 -0.149 H4 M0F 24
M0F H5 H5 H 0 1 N N N N N N 114.603 204.306 4.207 -3.371 -2.612 1.321 H5 M0F 25
M0F H6 H6 H 0 1 N N N N N N 114.320 203.868 -3.201 2.680 -2.003 1.064 H6 M0F 26
M0F H7 H7 H 0 1 N N N N N N 116.168 205.179 -2.276 0.674 -0.849 1.897 H7 M0F 27
M0F H8 H8 H 0 1 N N N N N N 119.736 206.396 0.576 -1.089 3.304 -0.720 H8 M0F 28
M0F H9 H9 H 0 1 N N N N N N 117.832 207.003 5.061 -4.666 -0.027 -1.827 H9 M0F 29
M0F H10 H10 H 0 1 N N N N N N 116.566 202.391 0.916 1.861 2.716 -0.126 H10 M0F 30
M0F H11 H11 H 0 1 N N N N N N 114.696 201.086 0.013 3.874 1.581 -0.969 H11 M0F 31
M0F H12 H12 H 0 1 N N N N N N 112.294 200.009 -2.126 6.272 -0.804 -1.593 H12 M0F 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M0F O2 C10 DOUB N N 1
M0F C11 C12 DOUB Y N 2
M0F C11 C9 SING Y N 3
M0F C10 C9 SING N N 4
M0F C10 O1 SING N N 5
M0F C12 C6 SING Y N 6
M0F C9 C8 DOUB Y N 7
M0F C6 C5 SING N N 8
M0F C6 C7 DOUB Y N 9
M0F C8 C7 SING Y N 10
M0F C5 C4 SING N N 11
M0F C4 C13 DOUB Y N 12
M0F C4 C3 SING Y N 13
M0F C13 O3 SING Y N 14
M0F C3 C2 DOUB Y N 15
M0F C3 C14 SING Y N 16
M0F O3 C14 SING Y N 17
M0F C2 C1 SING Y N 18
M0F C14 C15 DOUB Y N 19
M0F C1 C DOUB Y N 20
M0F C15 C SING Y N 21
M0F C O SING N N 22
M0F C5 H1 SING N N 23
M0F C5 H2 SING N N 24
M0F C2 H3 SING N N 25
M0F O H4 SING N N 26
M0F C1 H5 SING N N 27
M0F C11 H6 SING N N 28
M0F C12 H7 SING N N 29
M0F C13 H8 SING N N 30
M0F C15 H9 SING N N 31
M0F C7 H10 SING N N 32
M0F C8 H11 SING N N 33
M0F O1 H12 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M0F InChI InChI 1.06 InChI=1S/C16H12O4/c17-13-5-6-14-12(9-20-15(14)8-13)7-10-1-3-11(4-2-10)16(18)19/h1-6,8-9,17H,7H2,(H,18,19)
M0F InChIKey InChI 1.06 AVYRIDIODQDKPX-UHFFFAOYSA-N
M0F SMILES_CANONICAL CACTVS 3.385 OC(=O)c1ccc(Cc2coc3cc(O)ccc23)cc1
M0F SMILES CACTVS 3.385 OC(=O)c1ccc(Cc2coc3cc(O)ccc23)cc1
M0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cc2coc3c2ccc(c3)O)C(=O)O
M0F SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cc2coc3c2ccc(c3)O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id M0F
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[(6-oxidanyl-1-benzofuran-3-yl)methyl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M0F 'Create component' 2022-07-18 PDBE
M0F 'Modify descriptor' 2022-08-22 RCSB
M0F 'Initial release' 2023-02-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M0F C6 C 11.056 0.948 1
M0F C5 C 9.588 0.639 2
M0F C4 C 9.122 -0.787 3
M0F C2 C 6.404 -0.494 4
M0F O2 O 15.925 3.302 5
M0F C C 5.104 -2.744 6
M0F O O 3.805 -3.494 7
M0F C1 C 5.104 -1.244 8
M0F C10 C 15.459 1.876 9
M0F C11 C 12.989 2.683 10
M0F C12 C 11.522 2.374 11
M0F C13 C 9.997 -1.994 12
M0F C14 C 7.702 -2.744 13
M0F C15 C 6.404 -3.494 14
M0F C3 C 7.702 -1.244 15
M0F C7 C 12.057 -0.168 16
M0F C8 C 13.525 0.141 17
M0F C9 C 13.991 1.567 18
M0F O1 O 16.461 0.760 19
M0F O3 O 9.122 -3.201 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M0F O2 C10 DOUBLE NONE 1
M0F C11 C12 DOUBLE NONE 2
M0F C11 C9 SINGLE NONE 3
M0F C10 C9 SINGLE NONE 4
M0F C10 O1 SINGLE NONE 5
M0F C12 C6 SINGLE NONE 6
M0F C9 C8 DOUBLE NONE 7
M0F C6 C5 SINGLE NONE 8
M0F C6 C7 DOUBLE NONE 9
M0F C8 C7 SINGLE NONE 10
M0F C5 C4 SINGLE NONE 11
M0F C4 C13 DOUBLE NONE 12
M0F C4 C3 SINGLE NONE 13
M0F C13 O3 SINGLE NONE 14
M0F C3 C2 DOUBLE NONE 15
M0F C3 C14 SINGLE NONE 16
M0F O3 C14 SINGLE NONE 17
M0F C2 C1 SINGLE NONE 18
M0F C14 C15 DOUBLE NONE 19
M0F C1 C DOUBLE NONE 20
M0F C15 C SINGLE NONE 21
M0F C O SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M0F MurckoScaffold S1 scaffold c1ccc(Cc2coc3ccccc23)cc1 InChI=1S/C15H12O/c1-2-6-12(7-3-1)10-13-11-16-15-9-5-4-8-14(13)15/h1-9,11H,10H2 BVQFHAIYRRWINS-UHFFFAOYSA-N
M0F furan F1 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
M0F phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M0F C6 S1 1
M0F C5 S1 1
M0F C4 S1 1
M0F C2 S1 1
M0F C S1 1
M0F C1 S1 1
M0F C11 S1 1
M0F C12 S1 1
M0F C13 S1 1
M0F C14 S1 1
M0F C15 S1 1
M0F C3 S1 1
M0F C7 S1 1
M0F C8 S1 1
M0F C9 S1 1
M0F O3 S1 1
M0F C13 F1 1
M0F C4 F1 1
M0F C3 F1 1
M0F C14 F1 1
M0F O3 F1 1
M0F C6 F2 1
M0F C12 F2 1
M0F C11 F2 1
M0F C9 F2 1
M0F C8 F2 1
M0F C7 F2 1
M0F C2 F2 2
M0F C3 F2 2
M0F C14 F2 2
M0F C15 F2 2
M0F C F2 2
M0F C1 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id M0F
_pdbe_chem_comp_rdkit_properties.exactmw 268.074
_pdbe_chem_comp_rdkit_properties.amw 268.268
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.062
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 131.477
_pdbe_chem_comp_rdkit_properties.tpsa 70.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.372
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.472
_pdbe_chem_comp_rdkit_properties.chi0v 9.633
_pdbe_chem_comp_rdkit_properties.chi1v 5.271
_pdbe_chem_comp_rdkit_properties.chi2v 2.339
_pdbe_chem_comp_rdkit_properties.chi3v 2.339
_pdbe_chem_comp_rdkit_properties.chi4v 1.469
_pdbe_chem_comp_rdkit_properties.chi0n 21.633
_pdbe_chem_comp_rdkit_properties.chi1n 11.087
_pdbe_chem_comp_rdkit_properties.chi2n 2.339
_pdbe_chem_comp_rdkit_properties.chi3n 2.339
_pdbe_chem_comp_rdkit_properties.chi4n 1.469
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.750
_pdbe_chem_comp_rdkit_properties.kappa1 4.664
_pdbe_chem_comp_rdkit_properties.kappa2 4.735
_pdbe_chem_comp_rdkit_properties.kappa3 2.232
_pdbe_chem_comp_rdkit_properties.Phi 1.104
#
_pdbe_chem_comp_external_mappings.comp_id M0F
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 166513891
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M0F C6 1.291 0.412 -1.108 ETKDGv3 1
M0F C5 0.104 0.690 -1.988 ETKDGv3 2
M0F C4 -1.058 -0.162 -1.574 ETKDGv3 3
M0F C2 -2.276 1.236 0.189 ETKDGv3 4
M0F O2 5.397 -1.475 1.188 ETKDGv3 5
M0F C -4.201 0.082 1.224 ETKDGv3 6
M0F O -5.275 0.035 2.111 ETKDGv3 7
M0F C1 -3.422 1.190 1.139 ETKDGv3 8
M0F C10 4.634 -0.512 1.467 ETKDGv3 9
M0F C11 3.225 -1.009 -0.624 ETKDGv3 10
M0F C12 2.190 -0.724 -1.423 ETKDGv3 11
M0F C13 -1.298 -1.412 -1.995 ETKDGv3 12
M0F C14 -2.879 -1.021 -0.471 ETKDGv3 13
M0F C15 -3.915 -1.101 0.366 ETKDGv3 14
M0F C3 -2.056 0.153 -0.560 ETKDGv3 15
M0F C7 1.516 1.142 -0.002 ETKDGv3 16
M0F C8 2.662 0.831 0.878 ETKDGv3 17
M0F C9 3.486 -0.194 0.591 ETKDGv3 18
M0F O1 4.883 0.247 2.609 ETKDGv3 19
M0F O3 -2.411 -1.975 -1.357 ETKDGv3 20
M0F H1 -0.182 1.763 -1.937 ETKDGv3 21
M0F H2 0.365 0.478 -3.048 ETKDGv3 22
M0F H3 -1.653 2.115 0.110 ETKDGv3 23
M0F H4 -5.504 0.818 2.713 ETKDGv3 24
M0F H5 -3.626 2.052 1.760 ETKDGv3 25
M0F H6 3.870 -1.842 -0.873 ETKDGv3 26
M0F H7 2.009 -1.329 -2.302 ETKDGv3 27
M0F H8 -0.702 -1.935 -2.731 ETKDGv3 28
M0F H9 -4.522 -1.995 0.418 ETKDGv3 29
M0F H10 0.863 1.964 0.261 ETKDGv3 30
M0F H11 2.819 1.445 1.756 ETKDGv3 31
M0F H12 5.667 0.034 3.214 ETKDGv3 32
#