data_LXH
#
_chem_comp.id LXH
_chem_comp.name "methyl (2~{S})-2-phenylpropanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-09-27
_chem_comp.pdbx_modified_date 2021-04-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 164.201
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LXH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6SXY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LXH C10 C1 C 0 1 N N N N N N 19.990 23.664 3.431 -3.823 0.924 0.244 C10 LXH 1
LXH C01 C2 C 0 1 Y N N N N N 18.133 26.487 0.891 2.995 -0.139 1.039 C01 LXH 2
LXH O01 O1 O 0 1 N N N N N N 20.358 21.976 0.983 -1.228 1.249 0.137 O01 LXH 3
LXH C02 C3 C 0 1 Y N N N N N 18.500 25.128 0.947 1.725 -0.681 1.099 C02 LXH 4
LXH O02 O2 O 0 1 N N N N N N 19.167 22.627 2.890 -2.898 -0.195 0.230 O02 LXH 5
LXH C03 C4 C 0 1 Y N N N N N 17.568 24.089 0.676 0.815 -0.422 0.091 C03 LXH 6
LXH C04 C5 C 0 1 Y N N N N N 16.250 24.444 0.327 1.175 0.378 -0.977 C04 LXH 7
LXH C05 C6 C 0 1 Y N N N N N 15.878 25.807 0.270 2.446 0.920 -1.037 C05 LXH 8
LXH C06 C7 C 0 1 Y N N N N N 16.811 26.829 0.553 3.354 0.666 -0.026 C06 LXH 9
LXH C07 C8 C 0 1 N N S N N N 17.996 22.585 0.729 -0.570 -1.013 0.157 C07 LXH 10
LXH C08 C9 C 0 1 N N N N N N 19.334 22.355 1.489 -1.589 0.097 0.174 C08 LXH 11
LXH C09 C10 C 0 1 N N N N N N 16.905 21.697 1.364 -0.804 -1.901 -1.067 C09 LXH 12
LXH H1 H1 H 0 1 N N N N N N 19.775 23.781 4.503 -4.846 0.550 0.291 H1 LXH 13
LXH H2 H2 H 0 1 N N N N N N 21.049 23.399 3.296 -3.624 1.549 1.115 H2 LXH 14
LXH H3 H3 H 0 1 N N N N N N 19.779 24.609 2.910 -3.693 1.514 -0.664 H3 LXH 15
LXH H4 H4 H 0 1 N N N N N N 18.859 27.258 1.105 3.707 -0.341 1.826 H4 LXH 16
LXH H5 H5 H 0 1 N N N N N N 19.517 24.868 1.203 1.444 -1.307 1.933 H5 LXH 17
LXH H6 H6 H 0 1 N N N N N N 15.525 23.676 0.103 0.464 0.580 -1.764 H6 LXH 18
LXH H7 H7 H 0 1 N N N N N N 14.865 26.071 0.006 2.727 1.545 -1.872 H7 LXH 19
LXH H8 H8 H 0 1 N N N N N N 16.512 27.866 0.510 4.346 1.089 -0.073 H8 LXH 20
LXH H9 H9 H 0 1 N N N N N N 18.141 22.247 -0.308 -0.668 -1.610 1.063 H9 LXH 21
LXH H10 H10 H 0 1 N N N N N N 17.246 20.651 1.381 -0.066 -2.704 -1.079 H10 LXH 22
LXH H11 H11 H 0 1 N N N N N N 16.709 22.036 2.392 -1.805 -2.329 -1.020 H11 LXH 23
LXH H12 H12 H 0 1 N N N N N N 15.981 21.771 0.771 -0.706 -1.304 -1.973 H12 LXH 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LXH C05 C04 DOUB Y N 1
LXH C05 C06 SING Y N 2
LXH C04 C03 SING Y N 3
LXH C06 C01 DOUB Y N 4
LXH C03 C07 SING N N 5
LXH C03 C02 DOUB Y N 6
LXH C07 C09 SING N N 7
LXH C07 C08 SING N N 8
LXH C01 C02 SING Y N 9
LXH O01 C08 DOUB N N 10
LXH C08 O02 SING N N 11
LXH O02 C10 SING N N 12
LXH C10 H1 SING N N 13
LXH C10 H2 SING N N 14
LXH C10 H3 SING N N 15
LXH C01 H4 SING N N 16
LXH C02 H5 SING N N 17
LXH C04 H6 SING N N 18
LXH C05 H7 SING N N 19
LXH C06 H8 SING N N 20
LXH C07 H9 SING N N 21
LXH C09 H10 SING N N 22
LXH C09 H11 SING N N 23
LXH C09 H12 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LXH InChI InChI 1.03 InChI=1S/C10H12O2/c1-8(10(11)12-2)9-6-4-3-5-7-9/h3-8H,1-2H3/t8-/m0/s1
LXH InChIKey InChI 1.03 DZIQUZJSNSZOCH-QMMMGPOBSA-N
LXH SMILES_CANONICAL CACTVS 3.385 COC(=O)[C@@H](C)c1ccccc1
LXH SMILES CACTVS 3.385 COC(=O)[CH](C)c1ccccc1
LXH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H](c1ccccc1)C(=O)OC
LXH SMILES "OpenEye OEToolkits" 2.0.7 CC(c1ccccc1)C(=O)OC
#
_pdbx_chem_comp_identifier.comp_id LXH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl (2~{S})-2-phenylpropanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LXH 'Create component' 2019-09-27 EBI
LXH 'Initial release' 2021-04-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LXH C10 C 6.897 3.750 1
LXH C01 C 5.598 -3.000 2
LXH O01 O 6.897 0.750 3
LXH C02 C 5.598 -1.500 4
LXH O02 O 5.598 3.000 5
LXH C03 C 4.299 -0.750 6
LXH C04 C 3.000 -1.500 7
LXH C05 C 3.000 -3.000 8
LXH C06 C 4.299 -3.750 9
LXH C07 C 4.299 0.750 10
LXH C08 C 5.598 1.500 11
LXH C09 C 3.000 1.500 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LXH C05 C04 DOUBLE NONE 1
LXH C05 C06 SINGLE NONE 2
LXH C04 C03 SINGLE NONE 3
LXH C06 C01 DOUBLE NONE 4
LXH C03 C07 SINGLE NONE 5
LXH C03 C02 DOUBLE NONE 6
LXH C07 C09 SINGLE BEGINDASH 7
LXH C07 C08 SINGLE NONE 8
LXH C01 C02 SINGLE NONE 9
LXH O01 C08 DOUBLE NONE 10
LXH C08 O02 SINGLE NONE 11
LXH O02 C10 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LXH MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LXH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LXH C01 S1 1
LXH C02 S1 1
LXH C03 S1 1
LXH C04 S1 1
LXH C05 S1 1
LXH C06 S1 1
LXH C01 F1 1
LXH C06 F1 1
LXH C05 F1 1
LXH C04 F1 1
LXH C03 F1 1
LXH C02 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LXH
_pdbe_chem_comp_rdkit_properties.exactmw 164.084
_pdbe_chem_comp_rdkit_properties.amw 164.204
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.026
_pdbe_chem_comp_rdkit_properties.tpsa 26.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.908
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.607
_pdbe_chem_comp_rdkit_properties.chi0v 5.816
_pdbe_chem_comp_rdkit_properties.chi1v 2.862
_pdbe_chem_comp_rdkit_properties.chi2v 1.047
_pdbe_chem_comp_rdkit_properties.chi3v 1.047
_pdbe_chem_comp_rdkit_properties.chi4v 0.528
_pdbe_chem_comp_rdkit_properties.chi0n 17.816
_pdbe_chem_comp_rdkit_properties.chi1n 8.862
_pdbe_chem_comp_rdkit_properties.chi2n 1.047
_pdbe_chem_comp_rdkit_properties.chi3n 1.047
_pdbe_chem_comp_rdkit_properties.chi4n 0.528
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.950
_pdbe_chem_comp_rdkit_properties.kappa2 3.904
_pdbe_chem_comp_rdkit_properties.kappa3 1.845
_pdbe_chem_comp_rdkit_properties.Phi 0.634
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LXH UniChem ZINC ZINC000037624047
LXH UniChem fdasrs MPL796NG2N
LXH UniChem Nikkaji J61.984A
LXH UniChem SureChEMBL SCHEMBL5537242
LXH UniChem 'PubChem TPHARMA' 14772487
LXH UniChem PubChem 9815297
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LXH C10 3.572 -1.226 -0.261 ETKDGv3 1
LXH C01 -2.615 -1.194 -0.312 ETKDGv3 2
LXH O01 1.595 -0.091 -1.895 ETKDGv3 3
LXH C02 -1.417 -0.412 -0.682 ETKDGv3 4
LXH O02 2.541 -0.358 0.195 ETKDGv3 5
LXH C03 -0.724 0.263 0.259 ETKDGv3 6
LXH C04 -1.187 0.207 1.671 ETKDGv3 7
LXH C05 -2.273 -0.503 2.000 ETKDGv3 8
LXH C06 -3.022 -1.237 0.961 ETKDGv3 9
LXH C07 0.507 1.073 -0.092 ETKDGv3 10
LXH C08 1.584 0.189 -0.664 ETKDGv3 11
LXH C09 0.164 2.240 -1.028 ETKDGv3 12
LXH H1 3.129 -2.137 -0.716 ETKDGv3 13
LXH H2 4.206 -0.703 -1.007 ETKDGv3 14
LXH H3 4.203 -1.526 0.601 ETKDGv3 15
LXH H4 -3.162 -1.731 -1.076 ETKDGv3 16
LXH H5 -1.108 -0.394 -1.719 ETKDGv3 17
LXH H6 -0.647 0.741 2.443 ETKDGv3 18
LXH H7 -2.606 -0.540 3.029 ETKDGv3 19
LXH H8 -3.899 -1.809 1.233 ETKDGv3 20
LXH H9 0.918 1.526 0.837 ETKDGv3 21
LXH H10 -0.599 2.894 -0.554 ETKDGv3 22
LXH H11 -0.234 1.877 -1.999 ETKDGv3 23
LXH H12 1.073 2.850 -1.222 ETKDGv3 24
#