data_LOC
#
_chem_comp.id LOC
_chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H25 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms COLCHICINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-08-12
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 399.437
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LOC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3E22
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LOC O4 O4 O 0 1 N N N N N N 255.874 10.297 24.480 -1.225 2.491 -2.254 O4 LOC 1
LOC C12 C12 C 0 1 N N N N N N 255.335 10.433 25.556 -1.831 3.157 -1.442 C12 LOC 2
LOC C13 C13 C 0 1 N N N N N N 254.241 11.442 25.683 -2.839 4.177 -1.905 C13 LOC 3
LOC N1 N1 N 0 1 N N N N N N 255.588 9.774 26.683 -1.608 2.980 -0.124 N1 LOC 4
LOC C11 C11 C 0 1 N N S N N N 256.619 8.760 26.905 -0.632 1.985 0.326 C11 LOC 5
LOC C14 C14 C 0 1 N N N N N N 256.353 7.392 26.374 -1.307 0.631 0.402 C14 LOC 6
LOC C15 C15 C 0 1 N N N N N N 255.048 7.098 25.983 -2.649 0.637 0.478 C15 LOC 7
LOC C10 C10 C 0 1 N N N N N N 256.719 8.622 28.422 -0.076 2.411 1.670 C10 LOC 8
LOC C9 C9 C 0 1 N N N N N N 257.684 7.537 28.921 0.661 1.261 2.350 C9 LOC 9
LOC C8 C8 C 0 1 Y N N N N N 258.933 7.475 28.080 1.539 0.557 1.347 C8 LOC 10
LOC C7 C7 C 0 1 Y N N N N N 260.179 7.877 28.525 2.902 0.767 1.352 C7 LOC 11
LOC C5 C5 C 0 1 Y N N N N N 261.321 7.802 27.717 3.711 0.109 0.433 C5 LOC 12
LOC C3 C3 C 0 1 Y N N N N N 261.210 7.311 26.423 3.153 -0.764 -0.495 C3 LOC 13
LOC C1 C1 C 0 1 Y N N N N N 259.963 6.897 25.950 1.780 -0.977 -0.508 C1 LOC 14
LOC O1 O1 O 0 1 N N N N N N 259.886 6.425 24.683 1.227 -1.829 -1.411 O1 LOC 15
LOC C2 C2 C 0 1 N N N N N N 259.734 7.375 23.620 0.927 -1.298 -2.703 C2 LOC 16
LOC O2 O2 O 0 1 N N N N N N 262.337 7.228 25.623 3.951 -1.408 -1.389 O2 LOC 17
LOC C4 C4 C 0 1 N N N N N N 263.157 6.052 25.576 4.478 -2.676 -0.993 C4 LOC 18
LOC O3 O3 O 0 1 N N N N N N 262.514 8.256 28.261 5.053 0.320 0.441 O3 LOC 19
LOC C6 C6 C 0 1 N N N N N N 263.832 7.733 28.101 5.562 1.229 1.419 C6 LOC 20
LOC C22 C22 C 0 1 Y N N N N N 258.819 6.958 26.731 0.973 -0.307 0.416 C22 LOC 21
LOC C21 C21 C 0 1 N N N N N N 257.429 6.550 26.340 -0.506 -0.512 0.390 C21 LOC 22
LOC C20 C20 C 0 1 N N N N N N 257.084 5.436 25.966 -0.948 -1.810 0.361 C20 LOC 23
LOC C19 C19 C 0 1 N N N N N N 256.268 4.743 25.550 -2.179 -2.356 0.378 C19 LOC 24
LOC C17 C17 C 0 1 N N N N N N 255.119 4.599 25.178 -3.386 -1.735 0.459 C17 LOC 25
LOC C16 C16 C 0 1 N N N N N N 254.396 5.858 25.389 -3.582 -0.360 0.535 C16 LOC 26
LOC O5 O5 O 0 1 N N N N N N 253.227 5.906 25.046 -4.742 0.004 0.670 O5 LOC 27
LOC O6 O6 O 0 1 N N N N N N 254.564 3.420 24.587 -4.490 -2.521 0.467 O6 LOC 28
LOC C18 C18 C 0 1 N N N N N N 254.283 3.529 23.204 -4.282 -3.932 0.389 C18 LOC 29
LOC H13 H13 H 0 1 N N N N N N 254.092 11.690 26.744 -2.886 4.173 -2.994 H13 LOC 30
LOC H13A H13A H 0 0 N N N N N N 254.515 12.352 25.129 -3.820 3.929 -1.499 H13A LOC 31
LOC H13B H13B H 0 0 N N N N N N 253.310 11.027 25.269 -2.542 5.166 -1.558 H13B LOC 32
LOC HN1 HN1 H 0 1 N N N N N N 255.008 9.997 27.467 -2.093 3.513 0.525 HN1 LOC 33
LOC H11 H11 H 0 1 N N N N N N 257.517 9.105 26.371 0.184 1.936 -0.395 H11 LOC 34
LOC H15 H15 H 0 1 N N N N N N 254.360 7.917 26.132 -3.076 1.629 0.499 H15 LOC 35
LOC H10 H10 H 0 1 N N N N N N 257.069 9.586 28.821 0.615 3.242 1.524 H10 LOC 36
LOC H10A H10A H 0 0 N N N N N N 255.718 8.327 28.770 -0.896 2.738 2.309 H10A LOC 37
LOC H9 H9 H 0 1 N N N N N N 257.967 7.766 29.959 1.277 1.652 3.159 H9 LOC 38
LOC H9A H9A H 0 1 N N N N N N 257.174 6.565 28.854 -0.064 0.555 2.755 H9A LOC 39
LOC H7 H7 H 0 1 N N N N N N 260.275 8.262 29.530 3.342 1.443 2.071 H7 LOC 40
LOC H2 H2 H 0 1 N N N N N N 259.695 8.391 24.039 0.285 -0.424 -2.597 H2 LOC 41
LOC H2A H2A H 0 1 N N N N N N 260.588 7.295 22.932 1.852 -1.012 -3.202 H2A LOC 42
LOC H2B H2B H 0 1 N N N N N N 258.802 7.168 23.074 0.413 -2.055 -3.296 H2B LOC 43
LOC H4 H4 H 0 1 N N N N N N 263.367 5.792 24.528 5.025 -3.118 -1.825 H4 LOC 44
LOC H4A H4A H 0 1 N N N N N N 264.103 6.244 26.103 5.150 -2.542 -0.146 H4A LOC 45
LOC H4B H4B H 0 1 N N N N N N 262.629 5.218 26.061 3.659 -3.336 -0.706 H4B LOC 46
LOC H6 H6 H 0 1 N N N N N N 264.046 7.598 27.030 5.317 0.863 2.417 H6 LOC 47
LOC H6A H6A H 0 1 N N N N N N 264.560 8.434 28.535 6.644 1.306 1.316 H6A LOC 48
LOC H6B H6B H 0 1 N N N N N N 263.906 6.763 28.614 5.112 2.210 1.272 H6B LOC 49
LOC H20 H20 H 0 1 N N N N N N 257.958 4.812 26.082 -0.152 -2.538 0.316 H20 LOC 50
LOC H19 H19 H 0 1 N N N N N N 256.735 3.776 25.438 -2.212 -3.434 0.319 H19 LOC 51
LOC H18 H18 H 0 1 N N N N N N 253.194 3.557 23.052 -3.758 -4.172 -0.537 H18 LOC 52
LOC H18A H18A H 0 0 N N N N N N 254.732 4.453 22.810 -3.684 -4.259 1.240 H18A LOC 53
LOC H18B H18B H 0 0 N N N N N N 254.705 2.662 22.675 -5.245 -4.443 0.404 H18B LOC 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LOC O4 C12 DOUB N N 1
LOC C12 C13 SING N N 2
LOC C12 N1 SING N N 3
LOC N1 C11 SING N N 4
LOC C11 C14 SING N N 5
LOC C11 C10 SING N N 6
LOC C14 C15 DOUB N N 7
LOC C14 C21 SING N N 8
LOC C15 C16 SING N N 9
LOC C10 C9 SING N N 10
LOC C9 C8 SING N N 11
LOC C8 C7 DOUB Y N 12
LOC C8 C22 SING Y N 13
LOC C7 C5 SING Y N 14
LOC C5 C3 DOUB Y N 15
LOC C5 O3 SING N N 16
LOC C3 C1 SING Y N 17
LOC C3 O2 SING N N 18
LOC C1 O1 SING N N 19
LOC C1 C22 DOUB Y N 20
LOC O1 C2 SING N N 21
LOC O2 C4 SING N N 22
LOC O3 C6 SING N N 23
LOC C22 C21 SING N N 24
LOC C21 C20 DOUB N N 25
LOC C20 C19 SING N N 26
LOC C19 C17 DOUB N N 27
LOC C17 C16 SING N N 28
LOC C17 O6 SING N N 29
LOC C16 O5 DOUB N N 30
LOC O6 C18 SING N N 31
LOC C13 H13 SING N N 32
LOC C13 H13A SING N N 33
LOC C13 H13B SING N N 34
LOC N1 HN1 SING N N 35
LOC C11 H11 SING N N 36
LOC C15 H15 SING N N 37
LOC C10 H10 SING N N 38
LOC C10 H10A SING N N 39
LOC C9 H9 SING N N 40
LOC C9 H9A SING N N 41
LOC C7 H7 SING N N 42
LOC C2 H2 SING N N 43
LOC C2 H2A SING N N 44
LOC C2 H2B SING N N 45
LOC C4 H4 SING N N 46
LOC C4 H4A SING N N 47
LOC C4 H4B SING N N 48
LOC C6 H6 SING N N 49
LOC C6 H6A SING N N 50
LOC C6 H6B SING N N 51
LOC C20 H20 SING N N 52
LOC C19 H19 SING N N 53
LOC C18 H18 SING N N 54
LOC C18 H18A SING N N 55
LOC C18 H18B SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LOC SMILES ACDLabs 10.04 O=C(NC3C1=CC(=O)C(OC)=CC=C1c2c(cc(OC)c(OC)c2OC)CC3)C
LOC SMILES_CANONICAL CACTVS 3.341 COC1=CC=C2C(=CC1=O)[C@H](CCc3cc(OC)c(OC)c(OC)c23)NC(C)=O
LOC SMILES CACTVS 3.341 COC1=CC=C2C(=CC1=O)[CH](CCc3cc(OC)c(OC)c(OC)c23)NC(C)=O
LOC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N[C@H]1CCc2cc(c(c(c2C3=CC=C(C(=O)C=C13)OC)OC)OC)OC
LOC SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)NC1CCc2cc(c(c(c2C3=CC=C(C(=O)C=C13)OC)OC)OC)OC
LOC InChI InChI 1.03 InChI=1S/C22H25NO6/c1-12(24)23-16-8-6-13-10-19(27-3)21(28-4)22(29-5)20(13)14-7-9-18(26-2)17(25)11-15(14)16/h7,9-11,16H,6,8H2,1-5H3,(H,23,24)/t16-/m0/s1
LOC InChIKey InChI 1.03 IAKHMKGGTNLKSZ-INIZCTEOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LOC "SYSTEMATIC NAME" ACDLabs 10.04 N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide
LOC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LOC 'Create component' 2008-08-12 PDBJ
LOC 'Modify aromatic_flag' 2011-06-04 RCSB
LOC 'Modify descriptor' 2011-06-04 RCSB
LOC 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LOC
_pdbx_chem_comp_synonyms.name COLCHICINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id LOC
_pdbe_chem_comp_drugbank_details.drugbank_id DB01394
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Colchicine
_pdbe_chem_comp_drugbank_details.description
'Colchicine is an alkaloid drug derived from a plant belonging to the Lily family, known as _Colchicum autumnale_, or "autumn crocus."[A183611] Its use was first approved by the FDA in 1961.[L8192] Colchicine is used in the treatment of gout flares and Familial Mediterranean fever,[L8138] and prevention of major cardiovascular events.[L47591] It has also been investigated in other inflammatory and fibrotic conditions.[A183602]'
_pdbe_chem_comp_drugbank_details.cas_number 64-86-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The exact mechanism of action of colchicine has not been fully established; however, colchicine likely interferes with the intracellular assembly of the inflammasome complex present in neutrophils and monocytes that mediates activation of interleukin-1β, an inflammatory mediator.[A183602,A183605,L8138] Colchicine also attenuates neutrophil adhesion and recruitment, as well as superoxide production.[A183611] Clinical data demonstrate that colchicine reduces high-sensitivity C- reactive protein (hs-CRP).[L47591]  Colchicine is an anti-mitotic drug that disrupts cytoskeletal functions by inhibiting β-tubulin polymerization into microtubules. Consequently, it prevents the activation, degranulation, and migration of neutrophils. This pharmacological action is thought to be related to colchicine ameliorating gout symptoms and preventing major cardiovascular events.[L8138,L47591] Colchicine blocks microtubule growth at low concentrations and causes the depolymerization of microtubules at high concentrations.[A183602]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
LOC COLCHICINE wwPDB ?
LOC Colchicine DrugBank ?
LOC Colchicinum DrugBank ?
#
_pdbe_chem_comp_drugbank_targets.comp_id LOC
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01394
_pdbe_chem_comp_drugbank_targets.name 'Tubulin beta chain'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P07437
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LOC O4 O 10.508 4.546 1
LOC C12 C 9.012 4.658 2
LOC C13 C 8.361 6.010 3
LOC N1 N 8.167 3.419 4
LOC C11 C 8.818 2.067 5
LOC C14 C 7.883 0.895 6
LOC C15 C 6.553 1.524 7
LOC C10 C 10.318 2.067 8
LOC C9 C 11.253 0.895 9
LOC C8 C 10.919 -0.568 10
LOC C7 C 12.224 -1.428 11
LOC C5 C 12.119 -2.987 12
LOC C3 C 10.711 -3.665 13
LOC C1 C 9.427 -2.775 14
LOC O1 O 8.068 -3.410 15
LOC C2 C 7.939 -4.904 16
LOC O2 O 10.593 -5.160 17
LOC C4 C 11.829 -6.010 18
LOC O3 O 13.362 -3.827 19
LOC C6 C 14.710 -3.171 20
LOC C22 C 9.568 -1.218 21
LOC C21 C 8.216 -0.568 22
LOC C20 C 7.292 -1.712 23
LOC C19 C 5.820 -1.706 24
LOC C17 C 4.904 -0.554 25
LOC C16 C 5.230 0.880 26
LOC O5 O 4.055 1.813 27
LOC O6 O 3.442 -0.888 28
LOC C18 C 3.000 -2.321 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LOC O4 C12 DOUBLE NONE 1
LOC C12 C13 SINGLE NONE 2
LOC C12 N1 SINGLE NONE 3
LOC C11 N1 SINGLE BEGINWEDGE 4
LOC C11 C14 SINGLE NONE 5
LOC C11 C10 SINGLE NONE 6
LOC C14 C15 DOUBLE NONE 7
LOC C14 C21 SINGLE NONE 8
LOC C15 C16 SINGLE NONE 9
LOC C10 C9 SINGLE NONE 10
LOC C9 C8 SINGLE NONE 11
LOC C8 C7 SINGLE NONE 12
LOC C8 C22 DOUBLE NONE 13
LOC C7 C5 DOUBLE NONE 14
LOC C5 C3 SINGLE NONE 15
LOC C5 O3 SINGLE NONE 16
LOC C3 C1 DOUBLE NONE 17
LOC C3 O2 SINGLE NONE 18
LOC C1 O1 SINGLE NONE 19
LOC C1 C22 SINGLE NONE 20
LOC O1 C2 SINGLE NONE 21
LOC O2 C4 SINGLE NONE 22
LOC O3 C6 SINGLE NONE 23
LOC C22 C21 SINGLE NONE 24
LOC C21 C20 DOUBLE NONE 25
LOC C20 C19 SINGLE NONE 26
LOC C19 C17 DOUBLE NONE 27
LOC C17 C16 SINGLE NONE 28
LOC C17 O6 SINGLE NONE 29
LOC C16 O5 DOUBLE NONE 30
LOC O6 C18 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LOC MurckoScaffold S1 scaffold O=c1cccc2c(c1)CCCc1ccccc1-2 InChI=1S/C16H14O/c17-14-8-4-10-16-13(11-14)7-3-6-12-5-1-2-9-15(12)16/h1-2,4-5,8-11H,3,6-7H2 XSMDDAFPLXKNOA-UHFFFAOYSA-N
LOC amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LOC phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LOC C11 S1 1
LOC C14 S1 1
LOC C15 S1 1
LOC C10 S1 1
LOC C9 S1 1
LOC C8 S1 1
LOC C7 S1 1
LOC C5 S1 1
LOC C3 S1 1
LOC C1 S1 1
LOC C22 S1 1
LOC C21 S1 1
LOC C20 S1 1
LOC C19 S1 1
LOC C17 S1 1
LOC C16 S1 1
LOC O5 S1 1
LOC N1 F1 1
LOC C12 F1 1
LOC O4 F1 1
LOC C13 F1 1
LOC C8 F2 1
LOC C7 F2 1
LOC C5 F2 1
LOC C3 F2 1
LOC C1 F2 1
LOC C22 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LOC
_pdbe_chem_comp_rdkit_properties.exactmw 399.168
_pdbe_chem_comp_rdkit_properties.amw 399.443
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 204.287
_pdbe_chem_comp_rdkit_properties.tpsa 83.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.432
_pdbe_chem_comp_rdkit_properties.CrippenMR 105.049
_pdbe_chem_comp_rdkit_properties.chi0v 13.897
_pdbe_chem_comp_rdkit_properties.chi1v 7.238
_pdbe_chem_comp_rdkit_properties.chi2v 3.538
_pdbe_chem_comp_rdkit_properties.chi3v 3.538
_pdbe_chem_comp_rdkit_properties.chi4v 2.435
_pdbe_chem_comp_rdkit_properties.chi0n 38.897
_pdbe_chem_comp_rdkit_properties.chi1n 19.686
_pdbe_chem_comp_rdkit_properties.chi2n 3.538
_pdbe_chem_comp_rdkit_properties.chi3n 3.538
_pdbe_chem_comp_rdkit_properties.chi4n 2.435
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.220
_pdbe_chem_comp_rdkit_properties.kappa1 5.683
_pdbe_chem_comp_rdkit_properties.kappa2 8.426
_pdbe_chem_comp_rdkit_properties.kappa3 3.722
_pdbe_chem_comp_rdkit_properties.Phi 1.651
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LOC UniChem DrugBank DB01394
LOC UniChem 'Guide to Pharmacology' 2367
LOC UniChem 'PubChem DOTF' 12012587
LOC UniChem 'KEGG LIGAND' C07592
LOC UniChem ChEBI 27882
LOC UniChem ZINC ZINC000000621853
LOC UniChem eMolecules 493998
LOC UniChem atlas colchicine
LOC UniChem fdasrs SML2Y3J35T
LOC UniChem SureChEMBL SCHEMBL8469
LOC UniChem PharmGKB PA449092
LOC UniChem PubChem 6167
LOC UniChem NMRShiftDB 60000009
LOC UniChem LINCS LSM-5199
LOC UniChem ACTor 30512-31-3
LOC UniChem BindingDb 50014846
LOC UniChem 'EPA CompTox Dashboard' DTXSID5024845
LOC UniChem DrugCentral 726
LOC UniChem MetaboLights MTBLC27882
LOC UniChem BRENDA 229302
LOC UniChem BRENDA 229303
LOC UniChem BRENDA 3334
LOC UniChem BRENDA 48923
LOC UniChem BRENDA 8394
LOC UniChem ChemicalBook CB6391144
LOC UniChem DailyMed COLCHICINE
LOC UniChem ClinicalTrials COLCHICINE
LOC UniChem ClinicalTrials COLCRYS
LOC UniChem ClinicalTrials GLOPERBA
LOC UniChem rxnorm COLCHICINE
LOC UniChem rxnorm COLCRYS
LOC UniChem rxnorm GLOPERBA
LOC UniChem rxnorm MITIGARE
LOC UniChem MedChemExpress HY-16569
LOC UniChem 'Probes And Drugs' PD002408
LOC UniChem CCDC COLCDH
LOC UniChem Nikkaji J9.267C
LOC UniChem 'PubChem TPHARMA' 14756995
LOC UniChem Mcule MCULE-1568647156
LOC UniChem Mcule MCULE-7858118731
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LOC O4 3.364 -2.881 1.501 ETKDGv3 1
LOC C12 2.338 -2.271 1.907 ETKDGv3 2
LOC C13 1.716 -2.659 3.209 ETKDGv3 3
LOC N1 1.792 -1.180 1.153 ETKDGv3 4
LOC C11 2.303 -0.790 -0.169 ETKDGv3 5
LOC C14 1.817 0.617 -0.537 ETKDGv3 6
LOC C15 2.662 1.636 -0.295 ETKDGv3 7
LOC C10 1.982 -1.870 -1.242 ETKDGv3 8
LOC C9 0.591 -1.813 -1.896 ETKDGv3 9
LOC C8 -0.500 -1.456 -0.917 ETKDGv3 10
LOC C7 -1.471 -2.488 -0.502 ETKDGv3 11
LOC C5 -2.493 -2.179 0.314 ETKDGv3 12
LOC C3 -2.640 -0.796 0.828 ETKDGv3 13
LOC C1 -1.717 0.145 0.504 ETKDGv3 14
LOC O1 -1.798 1.435 1.038 ETKDGv3 15
LOC C2 -0.819 1.957 1.930 ETKDGv3 16
LOC O2 -3.754 -0.559 1.658 ETKDGv3 17
LOC C4 -4.162 0.688 2.210 ETKDGv3 18
LOC O3 -3.446 -3.131 0.714 ETKDGv3 19
LOC C6 -3.446 -4.500 0.321 ETKDGv3 20
LOC C22 -0.607 -0.200 -0.437 ETKDGv3 21
LOC C21 0.368 0.836 -0.865 ETKDGv3 22
LOC C20 -0.115 1.842 -1.617 ETKDGv3 23
LOC C19 0.645 2.928 -2.256 ETKDGv3 24
LOC C17 1.722 3.538 -1.737 ETKDGv3 25
LOC C16 2.381 3.056 -0.520 ETKDGv3 26
LOC O5 2.885 3.900 0.269 ETKDGv3 27
LOC O6 2.270 4.693 -2.324 ETKDGv3 28
LOC C18 1.788 5.327 -3.505 ETKDGv3 29
LOC H13 2.077 -3.660 3.529 ETKDGv3 30
LOC H13A 0.612 -2.696 3.100 ETKDGv3 31
LOC H13B 1.983 -1.911 3.983 ETKDGv3 32
LOC HN1 1.048 -0.606 1.613 ETKDGv3 33
LOC H11 3.415 -0.778 -0.099 ETKDGv3 34
LOC H15 3.632 1.425 0.141 ETKDGv3 35
LOC H10 2.736 -1.788 -2.056 ETKDGv3 36
LOC H10A 2.118 -2.880 -0.801 ETKDGv3 37
LOC H9 0.379 -2.794 -2.372 ETKDGv3 38
LOC H9A 0.601 -1.071 -2.725 ETKDGv3 39
LOC H7 -1.349 -3.493 -0.881 ETKDGv3 40
LOC H2 0.142 2.134 1.411 ETKDGv3 41
LOC H2A -0.661 1.252 2.775 ETKDGv3 42
LOC H2B -1.180 2.924 2.336 ETKDGv3 43
LOC H4 -3.414 1.047 2.947 ETKDGv3 44
LOC H4A -5.125 0.546 2.742 ETKDGv3 45
LOC H4B -4.319 1.435 1.404 ETKDGv3 46
LOC H6 -3.540 -4.581 -0.783 ETKDGv3 47
LOC H6A -2.514 -4.997 0.664 ETKDGv3 48
LOC H6B -4.313 -5.011 0.788 ETKDGv3 49
LOC H20 -1.170 1.825 -1.869 ETKDGv3 50
LOC H19 0.178 3.345 -3.137 ETKDGv3 51
LOC H18 2.427 6.206 -3.730 ETKDGv3 52
LOC H18A 0.746 5.678 -3.353 ETKDGv3 53
LOC H18B 1.837 4.625 -4.364 ETKDGv3 54
#