data_LNW
#
_chem_comp.id LNW
_chem_comp.name "2,2'-biphenyl-3,5-diyldiacetic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H14 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-21
_chem_comp.pdbx_modified_date 2016-03-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 270.280
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LNW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HMW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LNW C1 C1 C 0 1 N N N N N N 17.685 66.298 12.469 1.926 2.292 0.984 C1 LNW 1
LNW C2 C2 C 0 1 Y N N N N N 17.962 64.896 11.960 1.163 1.099 0.469 C2 LNW 2
LNW C3 C3 C 0 1 Y N N N N N 17.885 63.824 12.859 1.847 -0.008 0.000 C3 LNW 3
LNW O1 O1 O 0 1 N N N N N N 20.042 66.634 12.850 2.857 4.390 0.073 O1 LNW 4
LNW O2 O2 O 0 1 N N N N N N 20.396 61.033 13.554 1.753 -3.003 1.264 O2 LNW 5
LNW O3 O3 O 0 1 N N N N N N 19.264 61.257 15.385 2.807 -4.418 -0.067 O3 LNW 6
LNW C11 C4 C 0 1 Y N N N N N 18.074 63.389 6.360 -4.480 1.122 0.474 C11 LNW 7
LNW C12 C5 C 0 1 Y N N N N N 18.977 62.395 5.972 -5.174 0.023 0.001 C12 LNW 8
LNW C13 C6 C 0 1 Y N N N N N 19.701 61.706 6.951 -4.490 -1.082 -0.472 C13 LNW 9
LNW C14 C7 C 0 1 Y N N N N N 19.540 62.026 8.299 -3.109 -1.093 -0.476 C14 LNW 10
LNW C15 C8 C 0 1 Y N N N N N 18.218 64.662 10.599 -0.217 1.110 0.473 C15 LNW 11
LNW C6 C9 C 0 1 N N N N N N 19.319 61.202 14.148 2.149 -3.268 0.154 C6 LNW 12
LNW C5 C10 C 0 1 N N N N N N 18.037 61.356 13.362 1.905 -2.309 -0.983 C5 LNW 13
LNW C4 C11 C 0 1 Y N N N N N 18.109 62.525 12.409 1.153 -1.107 -0.473 C4 LNW 14
LNW C7 C12 C 0 1 Y N N N N N 18.338 62.293 11.047 -0.227 -1.105 -0.479 C7 LNW 15
LNW C8 C13 C 0 1 Y N N N N N 18.432 63.354 10.137 -0.921 0.005 -0.002 C8 LNW 16
LNW C C14 C 0 1 N N N N N N 18.925 67.154 12.671 2.187 3.248 -0.152 C LNW 17
LNW O O4 O 0 1 N N N N N N 18.784 68.394 12.682 1.794 2.987 -1.264 O LNW 18
LNW C9 C15 C 0 1 Y N N N N N 18.659 63.046 8.690 -2.405 0.011 -0.001 C9 LNW 19
LNW C10 C16 C 0 1 Y N N N N N 17.910 63.707 7.710 -3.100 1.121 0.475 C10 LNW 20
LNW H1 H1 H 0 1 N N N N N N 17.033 66.804 11.742 1.340 2.794 1.753 H1 LNW 21
LNW H2 H2 H 0 1 N N N N N N 17.164 66.216 13.434 2.875 1.962 1.407 H2 LNW 22
LNW H3 H3 H 0 1 N N N N N N 17.653 64.004 13.898 2.927 -0.014 0.004 H3 LNW 23
LNW H4 H4 H 0 1 N N N N N N 20.691 67.315 12.982 3.000 4.971 -0.686 H4 LNW 24
LNW H5 H5 H 0 1 N N N N N N 20.136 61.152 15.746 2.940 -5.001 0.693 H5 LNW 25
LNW H6 H6 H 0 1 N N N N N N 17.500 63.914 5.611 -5.019 1.984 0.839 H6 LNW 26
LNW H7 H7 H 0 1 N N N N N N 19.114 62.161 4.927 -6.254 0.027 0.002 H7 LNW 27
LNW H8 H8 H 0 1 N N N N N N 20.387 60.924 6.662 -5.036 -1.938 -0.840 H8 LNW 28
LNW H9 H9 H 0 1 N N N N N N 20.098 61.484 9.048 -2.576 -1.957 -0.846 H9 LNW 29
LNW H10 H10 H 0 1 N N N N N N 18.250 65.490 9.907 -0.751 1.973 0.843 H10 LNW 30
LNW H11 H11 H 0 1 N N N N N N 17.205 61.517 14.063 2.860 -1.990 -1.400 H11 LNW 31
LNW H12 H12 H 0 1 N N N N N N 17.858 60.436 12.786 1.318 -2.804 -1.756 H12 LNW 32
LNW H13 H13 H 0 1 N N N N N N 18.444 61.279 10.692 -0.768 -1.964 -0.848 H13 LNW 33
LNW H14 H14 H 0 1 N N N N N N 17.200 64.468 8.000 -2.559 1.982 0.840 H14 LNW 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LNW C12 C11 DOUB Y N 1
LNW C12 C13 SING Y N 2
LNW C11 C10 SING Y N 3
LNW C13 C14 DOUB Y N 4
LNW C10 C9 DOUB Y N 5
LNW C14 C9 SING Y N 6
LNW C9 C8 SING N N 7
LNW C8 C15 DOUB Y N 8
LNW C8 C7 SING Y N 9
LNW C15 C2 SING Y N 10
LNW C7 C4 DOUB Y N 11
LNW C2 C1 SING N N 12
LNW C2 C3 DOUB Y N 13
LNW C4 C3 SING Y N 14
LNW C4 C5 SING N N 15
LNW C1 C SING N N 16
LNW C O DOUB N N 17
LNW C O1 SING N N 18
LNW C5 C6 SING N N 19
LNW O2 C6 DOUB N N 20
LNW C6 O3 SING N N 21
LNW C1 H1 SING N N 22
LNW C1 H2 SING N N 23
LNW C3 H3 SING N N 24
LNW O1 H4 SING N N 25
LNW O3 H5 SING N N 26
LNW C11 H6 SING N N 27
LNW C12 H7 SING N N 28
LNW C13 H8 SING N N 29
LNW C14 H9 SING N N 30
LNW C15 H10 SING N N 31
LNW C5 H11 SING N N 32
LNW C5 H12 SING N N 33
LNW C7 H13 SING N N 34
LNW C10 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LNW SMILES ACDLabs 12.01 C(C(O)=O)c1cc(CC(=O)O)cc(c1)c2ccccc2
LNW InChI InChI 1.03 InChI=1S/C16H14O4/c17-15(18)9-11-6-12(10-16(19)20)8-14(7-11)13-4-2-1-3-5-13/h1-8H,9-10H2,(H,17,18)(H,19,20)
LNW InChIKey InChI 1.03 VAGQJIBPPQRDCK-UHFFFAOYSA-N
LNW SMILES_CANONICAL CACTVS 3.385 OC(=O)Cc1cc(CC(O)=O)cc(c1)c2ccccc2
LNW SMILES CACTVS 3.385 OC(=O)Cc1cc(CC(O)=O)cc(c1)c2ccccc2
LNW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 c1ccc(cc1)c2cc(cc(c2)CC(=O)O)CC(=O)O
LNW SMILES "OpenEye OEToolkits" 2.0.4 c1ccc(cc1)c2cc(cc(c2)CC(=O)O)CC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LNW "SYSTEMATIC NAME" ACDLabs 12.01 "2,2'-biphenyl-3,5-diyldiacetic acid"
LNW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-[3-(2-hydroxy-2-oxoethyl)-5-phenyl-phenyl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LNW 'Create component' 2016-01-21 PDBJ
LNW 'Initial release' 2016-03-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LNW C1 C 9.495 -2.160 1
LNW C2 C 8.196 -1.410 2
LNW C3 C 6.897 -2.160 3
LNW O1 O 10.794 -4.410 4
LNW O2 O 3.000 -4.410 5
LNW O3 O 5.598 -4.410 6
LNW C11 C 8.196 4.590 7
LNW C12 C 6.897 5.340 8
LNW C13 C 5.598 4.590 9
LNW C14 C 5.598 3.090 10
LNW C15 C 8.196 0.090 11
LNW C6 C 4.299 -3.660 12
LNW C5 C 4.299 -2.160 13
LNW C4 C 5.598 -1.410 14
LNW C7 C 5.598 0.090 15
LNW C8 C 6.897 0.840 16
LNW C C 9.495 -3.660 17
LNW O O 8.196 -4.410 18
LNW C9 C 6.897 2.340 19
LNW C10 C 8.196 3.090 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LNW C12 C11 DOUBLE NONE 1
LNW C12 C13 SINGLE NONE 2
LNW C11 C10 SINGLE NONE 3
LNW C13 C14 DOUBLE NONE 4
LNW C10 C9 DOUBLE NONE 5
LNW C14 C9 SINGLE NONE 6
LNW C9 C8 SINGLE NONE 7
LNW C8 C15 SINGLE NONE 8
LNW C8 C7 DOUBLE NONE 9
LNW C15 C2 DOUBLE NONE 10
LNW C7 C4 SINGLE NONE 11
LNW C2 C1 SINGLE NONE 12
LNW C2 C3 SINGLE NONE 13
LNW C4 C3 DOUBLE NONE 14
LNW C4 C5 SINGLE NONE 15
LNW C1 C SINGLE NONE 16
LNW C O DOUBLE NONE 17
LNW C O1 SINGLE NONE 18
LNW C5 C6 SINGLE NONE 19
LNW O2 C6 DOUBLE NONE 20
LNW C6 O3 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LNW MurckoScaffold S1 scaffold c1ccc(-c2ccccc2)cc1 InChI=1S/C12H10/c1-3-7-11(8-4-1)12-9-5-2-6-10-12/h1-10H ZUOUZKKEUPVFJK-UHFFFAOYSA-N
LNW phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LNW C2 S1 1
LNW C3 S1 1
LNW C11 S1 1
LNW C12 S1 1
LNW C13 S1 1
LNW C14 S1 1
LNW C15 S1 1
LNW C4 S1 1
LNW C7 S1 1
LNW C8 S1 1
LNW C9 S1 1
LNW C10 S1 1
LNW C2 F1 1
LNW C15 F1 1
LNW C8 F1 1
LNW C7 F1 1
LNW C4 F1 1
LNW C3 F1 1
LNW C11 F1 2
LNW C12 F1 2
LNW C13 F1 2
LNW C14 F1 2
LNW C9 F1 2
LNW C10 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id LNW
_pdbe_chem_comp_rdkit_properties.exactmw 270.089
_pdbe_chem_comp_rdkit_properties.amw 270.284
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.703
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.118
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.704
_pdbe_chem_comp_rdkit_properties.chi0v 9.633
_pdbe_chem_comp_rdkit_properties.chi1v 5.066
_pdbe_chem_comp_rdkit_properties.chi2v 1.954
_pdbe_chem_comp_rdkit_properties.chi3v 1.954
_pdbe_chem_comp_rdkit_properties.chi4v 1.298
_pdbe_chem_comp_rdkit_properties.chi0n 23.633
_pdbe_chem_comp_rdkit_properties.chi1n 11.883
_pdbe_chem_comp_rdkit_properties.chi2n 1.954
_pdbe_chem_comp_rdkit_properties.chi3n 1.954
_pdbe_chem_comp_rdkit_properties.chi4n 1.298
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.620
_pdbe_chem_comp_rdkit_properties.kappa1 4.448
_pdbe_chem_comp_rdkit_properties.kappa2 6.015
_pdbe_chem_comp_rdkit_properties.kappa3 3.684
_pdbe_chem_comp_rdkit_properties.Phi 1.338
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LNW UniChem ZINC ZINC000584905621
LNW UniChem PubChem 118797899
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LNW C1 -1.635 2.739 -0.985 ETKDGv3 1
LNW C2 -1.117 1.395 -0.554 ETKDGv3 2
LNW C3 -2.072 0.302 -0.255 ETKDGv3 3
LNW O1 -3.148 3.505 0.849 ETKDGv3 4
LNW O2 -2.057 -3.803 -1.029 ETKDGv3 5
LNW O3 -3.790 -2.447 -1.689 ETKDGv3 6
LNW C11 4.496 -0.078 -0.473 ETKDGv3 7
LNW C12 4.948 -0.792 0.563 ETKDGv3 8
LNW C13 3.997 -1.347 1.546 ETKDGv3 9
LNW C14 2.682 -1.141 1.400 ETKDGv3 10
LNW C15 0.199 1.191 -0.377 ETKDGv3 11
LNW C6 -2.801 -2.816 -0.783 ETKDGv3 12
LNW C5 -2.591 -2.010 0.459 ETKDGv3 13
LNW C4 -1.629 -0.887 0.188 ETKDGv3 14
LNW C7 -0.173 -1.110 0.349 ETKDGv3 15
LNW C8 0.708 -0.127 0.084 ETKDGv3 16
LNW C -1.914 3.589 0.212 ETKDGv3 17
LNW O -1.019 4.350 0.669 ETKDGv3 18
LNW C9 2.167 -0.352 0.248 ETKDGv3 19
LNW C10 3.046 0.153 -0.640 ETKDGv3 20
LNW H1 -2.570 2.614 -1.572 ETKDGv3 21
LNW H2 -0.900 3.248 -1.648 ETKDGv3 22
LNW H3 -3.133 0.471 -0.396 ETKDGv3 23
LNW H4 -3.347 4.061 1.672 ETKDGv3 24
LNW H5 -3.934 -2.972 -2.543 ETKDGv3 25
LNW H6 5.192 0.330 -1.195 ETKDGv3 26
LNW H7 6.010 -0.962 0.685 ETKDGv3 27
LNW H8 4.367 -1.917 2.389 ETKDGv3 28
LNW H9 2.000 -1.540 2.140 ETKDGv3 29
LNW H10 0.897 2.001 -0.554 ETKDGv3 30
LNW H11 -3.567 -1.613 0.812 ETKDGv3 31
LNW H12 -2.194 -2.663 1.266 ETKDGv3 32
LNW H13 0.173 -2.088 0.664 ETKDGv3 33
LNW H14 2.708 0.717 -1.501 ETKDGv3 34
#