data_LIJ
#
_chem_comp.id LIJ
_chem_comp.name
"BENZYL [(1S)-2-({(1S,2R)-1-BENZYL-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}AMINO)-2-OXO-1-{[(1-PROPYLBUTYL)SULFONYL]METHYL}ETHYL]CARBAMATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H49 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-07-10
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 667.855
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LIJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LIJ C4 C4 C 0 1 N N N N N N 12.485 -2.822 68.394 -0.058 5.813 1.225 C4 LIJ 1
LIJ C5 C5 C 0 1 N N N N N N 12.472 -1.276 68.149 -1.371 5.030 1.170 C5 LIJ 2
LIJ C6 C6 C 0 1 N N N N N N 11.094 -0.684 67.630 -1.585 4.490 -0.245 C6 LIJ 3
LIJ C7 C7 C 0 1 N N N N N N 10.814 0.872 67.521 -2.960 3.825 -0.335 C7 LIJ 4
LIJ C10 C10 C 0 1 N N S N N N 11.898 4.045 70.474 -1.501 0.045 0.609 C10 LIJ 5
LIJ N12 N12 N 0 1 N N N N N N 12.721 6.112 69.376 0.897 -0.150 0.034 N12 LIJ 6
LIJ C13 C13 C 0 1 N N S N N N 13.523 7.288 69.036 2.031 -0.871 -0.549 C13 LIJ 7
LIJ C15 C15 C 0 1 Y N N N N N 14.547 5.835 67.124 0.874 -1.160 -2.723 C15 LIJ 8
LIJ C17 C17 C 0 1 Y N N N N N 14.956 3.949 65.458 -0.232 -2.979 -3.817 C17 LIJ 9
LIJ C20 C20 C 0 1 Y N N N N N 15.542 5.208 68.021 -0.262 -0.385 -2.862 C20 LIJ 10
LIJ C21 C21 C 0 1 N N R N N N 12.770 8.605 69.360 3.329 -0.404 0.114 C21 LIJ 11
LIJ C22 C22 C 0 1 N N N N N N 12.538 8.763 70.835 4.498 -1.243 -0.404 C22 LIJ 12
LIJ C24 C24 C 0 1 N N N N N N 11.667 10.328 72.560 6.800 -1.714 -0.224 C24 LIJ 13
LIJ C26 C26 C 0 1 Y N N N N N 14.199 11.137 72.475 8.923 -0.405 -0.026 C26 LIJ 14
LIJ C28 C28 C 0 1 Y N N N N N 15.853 10.552 74.290 10.466 -0.792 1.773 C28 LIJ 15
LIJ C1 C1 C 0 1 N N N N N N 11.498 3.086 64.335 -5.020 2.713 -3.389 C1 LIJ 16
LIJ C2 C2 C 0 1 N N N N N N 10.675 2.435 65.467 -4.695 2.968 -1.916 C2 LIJ 17
LIJ C3 C3 C 0 1 N N N N N N 11.590 1.614 66.410 -3.243 3.434 -1.787 C3 LIJ 18
LIJ S8 S8 S 0 1 N N N N N N 10.825 1.749 69.146 -2.984 2.341 0.707 S8 LIJ 19
LIJ O8B O8B O 0 1 N N N N N N 9.475 2.201 69.366 -4.225 1.672 0.530 O8B LIJ 20
LIJ O8A O8A O 0 1 N N N N N N 11.278 0.792 70.117 -2.554 2.688 2.016 O8A LIJ 21
LIJ C9 C9 C 0 1 N N N N N N 11.936 3.231 69.172 -1.677 1.384 -0.109 C9 LIJ 22
LIJ C11 C11 C 0 1 N N N N N N 12.885 5.204 70.349 -0.334 -0.697 0.009 C11 LIJ 23
LIJ O11 O11 O 0 1 N N N N N N 13.812 5.215 71.197 -0.503 -1.787 -0.496 O11 LIJ 24
LIJ C14 C14 C 0 1 N N N N N N 13.810 7.131 67.524 2.097 -0.590 -2.052 C14 LIJ 25
LIJ C16 C16 C 0 1 Y N N N N N 14.264 5.185 65.834 0.891 -2.455 -3.205 C16 LIJ 26
LIJ C18 C18 C 0 1 Y N N N N N 15.933 3.351 66.365 -1.369 -2.205 -3.955 C18 LIJ 27
LIJ C19 C19 C 0 1 Y N N N N N 16.221 3.985 67.643 -1.384 -0.908 -3.478 C19 LIJ 28
LIJ O21 O21 O 0 1 N N N N N N 13.530 9.720 68.997 3.555 0.972 -0.198 O21 LIJ 29
LIJ N23 N23 N 0 1 N N N N N N 11.848 10.066 71.121 5.723 -0.877 0.319 N23 LIJ 30
LIJ C25 C25 C 0 1 Y N N N N N 13.111 10.415 73.167 8.093 -1.387 0.478 C25 LIJ 31
LIJ C27 C27 C 0 1 Y N N N N N 15.565 11.226 72.999 10.111 -0.101 0.624 C27 LIJ 32
LIJ O27 O27 O 0 1 N N N N N N 16.470 11.940 72.218 10.927 0.868 0.132 O27 LIJ 33
LIJ C29 C29 C 0 1 Y N N N N N 14.787 9.834 74.992 9.635 -1.777 2.270 C29 LIJ 34
LIJ C30 C30 C 0 1 Y N N N N N 13.429 9.765 74.435 8.450 -2.075 1.624 C30 LIJ 35
LIJ C31 C31 C 0 1 N N N N N N 17.783 12.371 72.679 12.055 0.940 1.006 C31 LIJ 36
LIJ N40 N40 N 0 1 N N N N N N 12.127 3.124 71.511 -2.718 -0.755 0.456 N40 LIJ 37
LIJ C41 C41 C 0 1 N N N N N N 11.169 2.687 72.426 -3.749 -0.581 1.307 C41 LIJ 38
LIJ O42 O42 O 0 1 N N N N N N 9.999 3.088 72.405 -3.669 0.238 2.200 O42 LIJ 39
LIJ O43 O43 O 0 1 N N N N N N 11.676 1.774 73.320 -4.869 -1.316 1.166 O43 LIJ 40
LIJ C44 C44 C 0 1 N N N N N N 10.869 1.175 74.347 -5.980 -1.130 2.083 C44 LIJ 41
LIJ C45 C45 C 0 1 Y N N N N N 11.677 0.207 75.197 -7.100 -2.066 1.711 C45 LIJ 42
LIJ C46 C46 C 0 1 Y N N N N N 11.773 0.409 76.632 -8.075 -1.658 0.820 C46 LIJ 43
LIJ C47 C47 C 0 1 Y N N N N N 12.539 -0.495 77.462 -9.101 -2.519 0.476 C47 LIJ 44
LIJ C48 C48 C 0 1 Y N N N N N 13.228 -1.620 76.869 -9.156 -3.784 1.030 C48 LIJ 45
LIJ C49 C49 C 0 1 Y N N N N N 13.139 -1.837 75.443 -8.185 -4.190 1.925 C49 LIJ 46
LIJ C50 C50 C 0 1 Y N N N N N 12.372 -0.935 74.601 -7.157 -3.331 2.266 C50 LIJ 47
LIJ H41 1H4 H 0 1 N N N N N N 11.590 -3.110 68.965 0.094 6.198 2.233 H41 LIJ 48
LIJ H42 2H4 H 0 1 N N N N N N 13.386 -3.095 68.962 0.769 5.155 0.958 H42 LIJ 49
LIJ H43 3H4 H 0 1 N N N N N N 12.488 -3.347 67.427 -0.102 6.645 0.521 H43 LIJ 50
LIJ H51 1H5 H 0 1 N N N N N N 13.208 -1.084 67.355 -1.328 4.198 1.874 H51 LIJ 51
LIJ H52 2H5 H 0 1 N N N N N N 12.705 -0.786 69.106 -2.198 5.688 1.437 H52 LIJ 52
LIJ H61 1H6 H 0 1 N N N N N N 10.398 -0.989 68.425 -1.531 5.311 -0.959 H61 LIJ 53
LIJ H62 2H6 H 0 1 N N N N N N 10.980 -1.071 66.606 -0.812 3.757 -0.475 H62 LIJ 54
LIJ H7 H7 H 0 1 N N N N N N 9.772 0.913 67.171 -3.724 4.523 0.009 H7 LIJ 55
LIJ H10 H10 H 0 1 N N N N N N 10.939 4.536 70.695 -1.313 0.222 1.668 H10 LIJ 56
LIJ HN12 HN12 H 0 0 N N N N N N 11.925 5.962 68.790 1.033 0.722 0.438 HN12 LIJ 57
LIJ H13 H13 H 0 1 N N N N N N 14.451 7.349 69.623 1.905 -1.941 -0.385 H13 LIJ 58
LIJ H17 H17 H 0 1 N N N N N N 14.743 3.479 64.509 -0.221 -3.993 -4.190 H17 LIJ 59
LIJ H20 H20 H 0 1 N N N N N N 15.766 5.669 68.972 -0.274 0.628 -2.489 H20 LIJ 60
LIJ H21 H21 H 0 1 N N N N N N 11.823 8.546 68.804 3.247 -0.522 1.195 H21 LIJ 61
LIJ H221 1H22 H 0 0 N N N N N N 13.509 8.752 71.352 4.285 -2.300 -0.246 H221 LIJ 62
LIJ H222 2H22 H 0 0 N N N N N N 11.908 7.935 71.192 4.635 -1.056 -1.470 H222 LIJ 63
LIJ H241 1H24 H 0 0 N N N N N N 11.076 9.535 73.042 6.558 -2.765 -0.068 H241 LIJ 64
LIJ H242 2H24 H 0 0 N N N N N N 11.122 11.271 72.717 6.908 -1.521 -1.292 H242 LIJ 65
LIJ H26 H26 H 0 1 N N N N N N 13.977 11.623 71.537 8.644 0.131 -0.922 H26 LIJ 66
LIJ H28 H28 H 0 1 N N N N N N 16.847 10.591 74.711 11.392 -0.559 2.279 H28 LIJ 67
LIJ H11 1H1 H 0 1 N N N N N N 12.335 2.426 64.065 -4.355 1.943 -3.780 H11 LIJ 68
LIJ H12 2H1 H 0 1 N N N N N N 11.890 4.055 64.678 -6.054 2.381 -3.481 H12 LIJ 69
LIJ H13A 3H1 H 0 0 N N N N N N 10.855 3.241 63.456 -4.883 3.634 -3.956 H13A LIJ 70
LIJ H21A 1H2 H 0 0 N N N N N N 9.931 1.759 65.020 -4.832 2.047 -1.349 H21A LIJ 71
LIJ H22 2H2 H 0 1 N N N N N N 10.177 3.225 66.048 -5.360 3.738 -1.525 H22 LIJ 72
LIJ H31 1H3 H 0 1 N N N N N N 12.094 0.852 65.797 -3.080 4.296 -2.434 H31 LIJ 73
LIJ H32 2H3 H 0 1 N N N N N N 12.299 2.305 66.889 -2.574 2.626 -2.082 H32 LIJ 74
LIJ H91 1H9 H 0 1 N N N N N N 12.964 2.852 69.071 -1.952 1.206 -1.149 H91 LIJ 75
LIJ H92 2H9 H 0 1 N N N N N N 11.626 3.896 68.353 -0.741 1.942 -0.072 H92 LIJ 76
LIJ H141 1H14 H 0 0 N N N N N N 14.477 7.962 67.250 2.134 0.487 -2.218 H141 LIJ 77
LIJ H142 2H14 H 0 0 N N N N N N 12.843 7.139 67.000 2.990 -1.053 -2.470 H142 LIJ 78
LIJ H16 H16 H 0 1 N N N N N N 13.542 5.622 65.160 1.779 -3.060 -3.097 H16 LIJ 79
LIJ H18 H18 H 0 1 N N N N N N 16.441 2.439 66.087 -2.246 -2.614 -4.436 H18 LIJ 80
LIJ H19 H19 H 0 1 N N N N N N 16.944 3.542 68.312 -2.272 -0.303 -3.586 H19 LIJ 81
LIJ HO21 HO21 H 0 0 N N N N N N 13.702 10.250 69.766 3.620 1.033 -1.161 HO21 LIJ 82
LIJ HN23 HN23 H 0 0 N N N N N N 12.403 10.804 70.737 5.938 0.075 0.061 HN23 LIJ 83
LIJ H29 H29 H 0 1 N N N N N N 15.002 9.348 75.932 9.911 -2.315 3.165 H29 LIJ 84
LIJ H30 H30 H 0 1 N N N N N N 12.659 9.228 74.969 7.801 -2.845 2.014 H30 LIJ 85
LIJ H311 1H31 H 0 0 N N N N N N 18.192 11.621 73.372 12.741 1.709 0.650 H311 LIJ 86
LIJ H312 2H31 H 0 0 N N N N N N 17.691 13.337 73.196 11.720 1.191 2.013 H312 LIJ 87
LIJ H313 3H31 H 0 0 N N N N N N 18.457 12.480 71.817 12.565 -0.023 1.022 H313 LIJ 88
LIJ HN40 HN40 H 0 0 N N N N N N 13.051 2.752 71.600 -2.783 -1.409 -0.257 HN40 LIJ 89
LIJ H441 1H44 H 0 0 N N N N N N 10.054 0.615 73.865 -5.651 -1.342 3.100 H441 LIJ 90
LIJ H442 2H44 H 0 0 N N N N N N 10.473 1.970 74.995 -6.331 -0.100 2.022 H442 LIJ 91
LIJ H46 H46 H 0 1 N N N N N N 11.265 1.247 77.086 -8.031 -0.670 0.387 H46 LIJ 92
LIJ H47 H47 H 0 1 N N N N N N 12.597 -0.329 78.528 -9.860 -2.202 -0.224 H47 LIJ 93
LIJ H48 H48 H 0 1 N N N N N N 13.804 -2.293 77.487 -9.959 -4.455 0.763 H48 LIJ 94
LIJ H49 H49 H 0 1 N N N N N N 13.648 -2.679 74.998 -8.228 -5.179 2.358 H49 LIJ 95
LIJ H50 H50 H 0 1 N N N N N N 12.315 -1.107 73.536 -6.397 -3.648 2.965 H50 LIJ 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LIJ C4 C5 SING N N 1
LIJ C4 H41 SING N N 2
LIJ C4 H42 SING N N 3
LIJ C4 H43 SING N N 4
LIJ C5 C6 SING N N 5
LIJ C5 H51 SING N N 6
LIJ C5 H52 SING N N 7
LIJ C6 C7 SING N N 8
LIJ C6 H61 SING N N 9
LIJ C6 H62 SING N N 10
LIJ C7 C3 SING N N 11
LIJ C7 S8 SING N N 12
LIJ C7 H7 SING N N 13
LIJ C10 C9 SING N N 14
LIJ C10 C11 SING N N 15
LIJ C10 N40 SING N N 16
LIJ C10 H10 SING N N 17
LIJ N12 C13 SING N N 18
LIJ N12 C11 SING N N 19
LIJ N12 HN12 SING N N 20
LIJ C13 C21 SING N N 21
LIJ C13 C14 SING N N 22
LIJ C13 H13 SING N N 23
LIJ C15 C20 DOUB Y N 24
LIJ C15 C14 SING N N 25
LIJ C15 C16 SING Y N 26
LIJ C17 C16 DOUB Y N 27
LIJ C17 C18 SING Y N 28
LIJ C17 H17 SING N N 29
LIJ C20 C19 SING Y N 30
LIJ C20 H20 SING N N 31
LIJ C21 C22 SING N N 32
LIJ C21 O21 SING N N 33
LIJ C21 H21 SING N N 34
LIJ C22 N23 SING N N 35
LIJ C22 H221 SING N N 36
LIJ C22 H222 SING N N 37
LIJ C24 N23 SING N N 38
LIJ C24 C25 SING N N 39
LIJ C24 H241 SING N N 40
LIJ C24 H242 SING N N 41
LIJ C26 C25 SING Y N 42
LIJ C26 C27 DOUB Y N 43
LIJ C26 H26 SING N N 44
LIJ C28 C27 SING Y N 45
LIJ C28 C29 DOUB Y N 46
LIJ C28 H28 SING N N 47
LIJ C1 C2 SING N N 48
LIJ C1 H11 SING N N 49
LIJ C1 H12 SING N N 50
LIJ C1 H13A SING N N 51
LIJ C2 C3 SING N N 52
LIJ C2 H21A SING N N 53
LIJ C2 H22 SING N N 54
LIJ C3 H31 SING N N 55
LIJ C3 H32 SING N N 56
LIJ S8 O8B DOUB N N 57
LIJ S8 O8A DOUB N N 58
LIJ S8 C9 SING N N 59
LIJ C9 H91 SING N N 60
LIJ C9 H92 SING N N 61
LIJ C11 O11 DOUB N N 62
LIJ C14 H141 SING N N 63
LIJ C14 H142 SING N N 64
LIJ C16 H16 SING N N 65
LIJ C18 C19 DOUB Y N 66
LIJ C18 H18 SING N N 67
LIJ C19 H19 SING N N 68
LIJ O21 HO21 SING N N 69
LIJ N23 HN23 SING N N 70
LIJ C25 C30 DOUB Y N 71
LIJ C27 O27 SING N N 72
LIJ O27 C31 SING N N 73
LIJ C29 C30 SING Y N 74
LIJ C29 H29 SING N N 75
LIJ C30 H30 SING N N 76
LIJ C31 H311 SING N N 77
LIJ C31 H312 SING N N 78
LIJ C31 H313 SING N N 79
LIJ N40 C41 SING N N 80
LIJ N40 HN40 SING N N 81
LIJ C41 O42 DOUB N N 82
LIJ C41 O43 SING N N 83
LIJ O43 C44 SING N N 84
LIJ C44 C45 SING N N 85
LIJ C44 H441 SING N N 86
LIJ C44 H442 SING N N 87
LIJ C45 C46 SING Y N 88
LIJ C45 C50 DOUB Y N 89
LIJ C46 C47 DOUB Y N 90
LIJ C46 H46 SING N N 91
LIJ C47 C48 SING Y N 92
LIJ C47 H47 SING N N 93
LIJ C48 C49 DOUB Y N 94
LIJ C48 H48 SING N N 95
LIJ C49 C50 SING Y N 96
LIJ C49 H49 SING N N 97
LIJ C50 H50 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LIJ SMILES ACDLabs 10.04 O=S(=O)(C(CCC)CCC)CC(NC(=O)OCc1ccccc1)C(=O)NC(Cc2ccccc2)C(O)CNCc3cc(OC)ccc3
LIJ SMILES_CANONICAL CACTVS 3.341 CCCC(CCC)[S](=O)(=O)C[C@@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)CNCc3cccc(OC)c3
LIJ SMILES CACTVS 3.341 CCCC(CCC)[S](=O)(=O)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](Cc2ccccc2)[CH](O)CNCc3cccc(OC)c3
LIJ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCC(CCC)S(=O)(=O)C[C@H](C(=O)N[C@@H](Cc1ccccc1)[C@@H](CNCc2cccc(c2)OC)O)NC(=O)OCc3ccccc3
LIJ SMILES "OpenEye OEToolkits" 1.5.0 CCCC(CCC)S(=O)(=O)CC(C(=O)NC(Cc1ccccc1)C(CNCc2cccc(c2)OC)O)NC(=O)OCc3ccccc3
LIJ InChI InChI 1.03 InChI=1S/C36H49N3O7S/c1-4-13-31(14-5-2)47(43,44)26-33(39-36(42)46-25-28-17-10-7-11-18-28)35(41)38-32(22-27-15-8-6-9-16-27)34(40)24-37-23-29-19-12-20-30(21-29)45-3/h6-12,15-21,31-34,37,40H,4-5,13-14,22-26H2,1-3H3,(H,38,41)(H,39,42)/t32-,33+,34+/m0/s1
LIJ InChIKey InChI 1.03 FJYALDRNDKNYKU-LBFZIJHGSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LIJ "SYSTEMATIC NAME" ACDLabs 10.04 "benzyl [(1S)-2-({(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxybenzyl)amino]propyl}amino)-2-oxo-1-{[(1-propylbutyl)sulfonyl]methyl}ethyl]carbamate"
LIJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "phenylmethyl N-[(2S)-3-heptan-4-ylsulfonyl-1-[[(2S,3R)-3-hydroxy-4-[(3-methoxyphenyl)methylamino]-1-phenyl-butan-2-yl]amino]-1-oxo-propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LIJ 'Create component' 2006-07-10 RCSB
LIJ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LIJ C4 C 15.990 9.000 1
LIJ C5 C 15.990 7.500 2
LIJ C6 C 14.691 6.750 3
LIJ C7 C 14.691 5.250 4
LIJ C10 C 12.093 2.250 5
LIJ N12 N 9.495 2.250 6
LIJ C13 C 8.196 1.500 7
LIJ C15 C 6.897 3.750 8
LIJ C17 C 5.598 6.000 9
LIJ C20 C 8.196 4.500 10
LIJ C21 C 8.196 0.000 11
LIJ C22 C 6.897 -0.750 12
LIJ C24 C 5.598 -3.000 13
LIJ C26 C 4.299 -5.250 14
LIJ C28 C 5.598 -7.500 15
LIJ C1 C 18.588 4.500 16
LIJ C2 C 17.290 5.250 17
LIJ C3 C 15.990 4.500 18
LIJ S8 S 13.392 4.500 19
LIJ O8B O 12.642 5.799 20
LIJ O8A O 14.142 3.201 21
LIJ C9 C 12.093 3.750 22
LIJ C11 C 10.794 1.500 23
LIJ O11 O 10.794 0.000 24
LIJ C14 C 6.897 2.250 25
LIJ C16 C 5.598 4.500 26
LIJ C18 C 6.897 6.750 27
LIJ C19 C 8.196 6.000 28
LIJ O21 O 9.495 -0.750 29
LIJ N23 N 6.897 -2.250 30
LIJ C25 C 5.598 -4.500 31
LIJ C27 C 4.299 -6.750 32
LIJ O27 O 3.000 -7.500 33
LIJ C29 C 6.897 -6.750 34
LIJ C30 C 6.897 -5.250 35
LIJ C31 C 3.000 -9.000 36
LIJ N40 N 13.392 1.500 37
LIJ C41 C 13.392 0.000 38
LIJ O42 O 12.093 -0.750 39
LIJ O43 O 14.691 -0.750 40
LIJ C44 C 14.691 -2.250 41
LIJ C45 C 15.990 -3.000 42
LIJ C46 C 17.290 -2.250 43
LIJ C47 C 18.588 -3.000 44
LIJ C48 C 18.588 -4.500 45
LIJ C49 C 17.290 -5.250 46
LIJ C50 C 15.990 -4.500 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LIJ C4 C5 SINGLE NONE 1
LIJ C5 C6 SINGLE NONE 2
LIJ C6 C7 SINGLE NONE 3
LIJ C7 C3 SINGLE NONE 4
LIJ C7 S8 SINGLE NONE 5
LIJ C10 C9 SINGLE BEGINWEDGE 6
LIJ C10 C11 SINGLE NONE 7
LIJ C10 N40 SINGLE NONE 8
LIJ N12 C13 SINGLE NONE 9
LIJ N12 C11 SINGLE NONE 10
LIJ C13 C21 SINGLE NONE 11
LIJ C13 C14 SINGLE BEGINDASH 12
LIJ C15 C20 DOUBLE NONE 13
LIJ C15 C14 SINGLE NONE 14
LIJ C15 C16 SINGLE NONE 15
LIJ C17 C16 DOUBLE NONE 16
LIJ C17 C18 SINGLE NONE 17
LIJ C20 C19 SINGLE NONE 18
LIJ C21 C22 SINGLE NONE 19
LIJ C21 O21 SINGLE BEGINDASH 20
LIJ C22 N23 SINGLE NONE 21
LIJ C24 N23 SINGLE NONE 22
LIJ C24 C25 SINGLE NONE 23
LIJ C26 C25 DOUBLE NONE 24
LIJ C26 C27 SINGLE NONE 25
LIJ C28 C27 DOUBLE NONE 26
LIJ C28 C29 SINGLE NONE 27
LIJ C1 C2 SINGLE NONE 28
LIJ C2 C3 SINGLE NONE 29
LIJ S8 O8B DOUBLE NONE 30
LIJ S8 O8A DOUBLE NONE 31
LIJ S8 C9 SINGLE NONE 32
LIJ C11 O11 DOUBLE NONE 33
LIJ C18 C19 DOUBLE NONE 34
LIJ C25 C30 SINGLE NONE 35
LIJ C27 O27 SINGLE NONE 36
LIJ O27 C31 SINGLE NONE 37
LIJ C29 C30 DOUBLE NONE 38
LIJ N40 C41 SINGLE NONE 39
LIJ C41 O42 DOUBLE NONE 40
LIJ C41 O43 SINGLE NONE 41
LIJ O43 C44 SINGLE NONE 42
LIJ C44 C45 SINGLE NONE 43
LIJ C45 C46 DOUBLE NONE 44
LIJ C45 C50 SINGLE NONE 45
LIJ C46 C47 SINGLE NONE 46
LIJ C47 C48 DOUBLE NONE 47
LIJ C48 C49 SINGLE NONE 48
LIJ C49 C50 DOUBLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LIJ MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCc1ccccc1)N[C@H](CCNCc1ccccc1)Cc1ccccc1' InChI=1S/C27H31N3O3/c31-26(20-29-27(32)33-21-24-14-8-3-9-15-24)30-25(18-22-10-4-1-5-11-22)16-17-28-19-23-12-6-2-7-13-23/h1-15,25,28H,16-21H2,(H,29,32)(H,30,31)/t25-/m1/s1 CBSIKOODEHTGLC-RUZDIDTESA-N
LIJ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LIJ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
LIJ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LIJ C10 S1 1
LIJ N12 S1 1
LIJ C13 S1 1
LIJ C15 S1 1
LIJ C17 S1 1
LIJ C20 S1 1
LIJ C21 S1 1
LIJ C22 S1 1
LIJ C24 S1 1
LIJ C26 S1 1
LIJ C28 S1 1
LIJ C11 S1 1
LIJ O11 S1 1
LIJ C14 S1 1
LIJ C16 S1 1
LIJ C18 S1 1
LIJ C19 S1 1
LIJ N23 S1 1
LIJ C25 S1 1
LIJ C27 S1 1
LIJ C29 S1 1
LIJ C30 S1 1
LIJ N40 S1 1
LIJ C41 S1 1
LIJ O42 S1 1
LIJ O43 S1 1
LIJ C44 S1 1
LIJ C45 S1 1
LIJ C46 S1 1
LIJ C47 S1 1
LIJ C48 S1 1
LIJ C49 S1 1
LIJ C50 S1 1
LIJ N12 F1 1
LIJ C11 F1 1
LIJ O11 F1 1
LIJ C10 F1 1
LIJ O11 F2 1
LIJ C11 F2 1
LIJ C10 F2 1
LIJ N40 F2 1
LIJ C15 F3 1
LIJ C20 F3 1
LIJ C19 F3 1
LIJ C18 F3 1
LIJ C17 F3 1
LIJ C16 F3 1
LIJ C26 F3 2
LIJ C25 F3 2
LIJ C30 F3 2
LIJ C29 F3 2
LIJ C28 F3 2
LIJ C27 F3 2
LIJ C45 F3 3
LIJ C46 F3 3
LIJ C47 F3 3
LIJ C48 F3 3
LIJ C49 F3 3
LIJ C50 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id LIJ
_pdbe_chem_comp_rdkit_properties.exactmw 667.329
_pdbe_chem_comp_rdkit_properties.amw 667.869
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 24
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 347.838
_pdbe_chem_comp_rdkit_properties.tpsa 143.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.925
_pdbe_chem_comp_rdkit_properties.CrippenMR 182.318
_pdbe_chem_comp_rdkit_properties.chi0v 23.424
_pdbe_chem_comp_rdkit_properties.chi1v 12.995
_pdbe_chem_comp_rdkit_properties.chi2v 5.403
_pdbe_chem_comp_rdkit_properties.chi3v 5.403
_pdbe_chem_comp_rdkit_properties.chi4v 3.284
_pdbe_chem_comp_rdkit_properties.chi0n 71.608
_pdbe_chem_comp_rdkit_properties.chi1n 35.762
_pdbe_chem_comp_rdkit_properties.chi2n 4.199
_pdbe_chem_comp_rdkit_properties.chi3n 4.199
_pdbe_chem_comp_rdkit_properties.chi4n 2.424
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.930
_pdbe_chem_comp_rdkit_properties.kappa1 8.614
_pdbe_chem_comp_rdkit_properties.kappa2 19.666
_pdbe_chem_comp_rdkit_properties.kappa3 13.005
_pdbe_chem_comp_rdkit_properties.Phi 3.604
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LIJ UniChem ZINC ZINC000024813442
LIJ UniChem PubChem 15942666
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LIJ C4 -1.433 -5.698 3.525 ETKDGv3 1
LIJ C5 -2.327 -5.070 2.460 ETKDGv3 2
LIJ C6 -3.114 -3.877 3.032 ETKDGv3 3
LIJ C7 -3.915 -3.077 1.977 ETKDGv3 4
LIJ C10 -2.590 0.234 -0.464 ETKDGv3 5
LIJ N12 -0.083 0.522 -0.818 ETKDGv3 6
LIJ C13 1.291 0.735 -0.342 ETKDGv3 7
LIJ C15 3.118 -0.321 1.120 ETKDGv3 8
LIJ C17 4.652 0.961 2.541 ETKDGv3 9
LIJ C20 4.034 -1.299 0.979 ETKDGv3 10
LIJ C21 2.248 1.042 -1.527 ETKDGv3 11
LIJ C22 2.467 -0.159 -2.484 ETKDGv3 12
LIJ C24 4.871 -0.286 -2.817 ETKDGv3 13
LIJ C26 6.656 0.257 -1.189 ETKDGv3 14
LIJ C28 8.408 -1.316 -0.547 ETKDGv3 15
LIJ C1 -6.916 -2.336 1.223 ETKDGv3 16
LIJ C2 -5.982 -3.220 0.397 ETKDGv3 17
LIJ C3 -4.948 -3.975 1.251 ETKDGv3 18
LIJ S8 -2.821 -2.202 0.832 ETKDGv3 19
LIJ O8B -2.744 -2.938 -0.478 ETKDGv3 20
LIJ O8A -1.438 -2.103 1.414 ETKDGv3 21
LIJ C9 -3.445 -0.542 0.557 ETKDGv3 22
LIJ C11 -1.218 0.588 0.058 ETKDGv3 23
LIJ O11 -1.075 0.975 1.250 ETKDGv3 24
LIJ C14 1.737 -0.472 0.523 ETKDGv3 25
LIJ C16 3.448 0.857 1.965 ETKDGv3 26
LIJ C18 5.655 -0.106 2.358 ETKDGv3 27
LIJ C19 5.359 -1.182 1.621 ETKDGv3 28
LIJ O21 1.730 2.132 -2.248 ETKDGv3 29
LIJ N23 3.706 -0.870 -2.138 ETKDGv3 30
LIJ C25 6.117 -0.624 -2.050 ETKDGv3 31
LIJ C27 7.860 -0.093 -0.403 ETKDGv3 32
LIJ O27 8.378 0.872 0.475 ETKDGv3 33
LIJ C29 7.808 -2.294 -1.477 ETKDGv3 34
LIJ C30 6.723 -1.969 -2.188 ETKDGv3 35
LIJ C31 9.499 0.670 1.331 ETKDGv3 36
LIJ N40 -3.286 1.440 -0.928 ETKDGv3 37
LIJ C41 -3.680 2.534 -0.088 ETKDGv3 38
LIJ O42 -3.443 2.512 1.151 ETKDGv3 39
LIJ O43 -4.333 3.629 -0.661 ETKDGv3 40
LIJ C44 -4.757 4.755 0.099 ETKDGv3 41
LIJ C45 -5.415 5.748 -0.813 ETKDGv3 42
LIJ C46 -6.721 5.639 -1.116 ETKDGv3 43
LIJ C47 -7.351 6.598 -2.049 ETKDGv3 44
LIJ C48 -6.618 7.569 -2.608 ETKDGv3 45
LIJ C49 -5.179 7.681 -2.297 ETKDGv3 46
LIJ C50 -4.606 6.817 -1.449 ETKDGv3 47
LIJ H41 -0.686 -4.960 3.885 ETKDGv3 48
LIJ H42 -0.894 -6.567 3.093 ETKDGv3 49
LIJ H43 -2.045 -6.051 4.383 ETKDGv3 50
LIJ H51 -1.691 -4.749 1.610 ETKDGv3 51
LIJ H52 -3.032 -5.848 2.095 ETKDGv3 52
LIJ H61 -2.417 -3.184 3.553 ETKDGv3 53
LIJ H62 -3.820 -4.254 3.806 ETKDGv3 54
LIJ H7 -4.465 -2.303 2.551 ETKDGv3 55
LIJ H10 -2.456 -0.431 -1.346 ETKDGv3 56
LIJ HN12 -0.262 0.363 -1.836 ETKDGv3 57
LIJ H13 1.286 1.643 0.299 ETKDGv3 58
LIJ H17 4.889 1.821 3.153 ETKDGv3 59
LIJ H20 3.814 -2.188 0.401 ETKDGv3 60
LIJ H21 3.227 1.350 -1.088 ETKDGv3 61
LIJ H221 1.611 -0.865 -2.426 ETKDGv3 62
LIJ H222 2.496 0.182 -3.545 ETKDGv3 63
LIJ H241 4.951 -0.687 -3.853 ETKDGv3 64
LIJ H242 4.777 0.821 -2.905 ETKDGv3 65
LIJ H26 6.208 1.234 -1.049 ETKDGv3 66
LIJ H28 9.285 -1.611 0.012 ETKDGv3 67
LIJ H11 -7.366 -2.917 2.057 ETKDGv3 68
LIJ H12 -7.735 -1.959 0.574 ETKDGv3 69
LIJ H13A -6.375 -1.459 1.632 ETKDGv3 70
LIJ H21A -6.604 -3.974 -0.132 ETKDGv3 71
LIJ H22 -5.480 -2.616 -0.386 ETKDGv3 72
LIJ H31 -4.416 -4.687 0.586 ETKDGv3 73
LIJ H32 -5.498 -4.585 2.002 ETKDGv3 74
LIJ H91 -3.483 -0.014 1.532 ETKDGv3 75
LIJ H92 -4.482 -0.611 0.174 ETKDGv3 76
LIJ H141 1.029 -0.597 1.368 ETKDGv3 77
LIJ H142 1.664 -1.402 -0.081 ETKDGv3 78
LIJ H16 2.714 1.635 2.131 ETKDGv3 79
LIJ H18 6.627 -0.019 2.826 ETKDGv3 80
LIJ H19 6.090 -1.969 1.490 ETKDGv3 81
LIJ HO21 2.482 2.518 -2.770 ETKDGv3 82
LIJ HN23 3.615 -1.865 -2.452 ETKDGv3 83
LIJ H29 8.249 -3.277 -1.580 ETKDGv3 84
LIJ H30 6.287 -2.694 -2.864 ETKDGv3 85
LIJ H311 9.674 1.592 1.922 ETKDGv3 86
LIJ H312 10.407 0.456 0.727 ETKDGv3 87
LIJ H313 9.298 -0.169 2.031 ETKDGv3 88
LIJ HN40 -3.505 1.514 -1.948 ETKDGv3 89
LIJ H441 -5.468 4.428 0.891 ETKDGv3 90
LIJ H442 -3.880 5.222 0.597 ETKDGv3 91
LIJ H46 -7.325 4.850 -0.686 ETKDGv3 92
LIJ H47 -8.405 6.511 -2.279 ETKDGv3 93
LIJ H48 -7.078 8.270 -3.292 ETKDGv3 94
LIJ H49 -4.588 8.461 -2.759 ETKDGv3 95
LIJ H50 -3.549 6.902 -1.230 ETKDGv3 96
#