data_LAB
#
_chem_comp.id LAB
_chem_comp.name "LATRUNCULIN B"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H29 N O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-06-20
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.513
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LAB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LAB O5 O5 O 0 1 N N N N N N 8.990 11.478 32.715 -5.825 -2.017 0.645 O5 LAB 1
LAB C18 C18 C 0 1 N N N N N N 8.923 12.139 31.700 -5.133 -1.085 0.283 C18 LAB 2
LAB N1 N1 N 0 1 N N N N N N 8.983 11.726 30.447 -3.863 -1.176 -0.101 N1 LAB 3
LAB C16 C16 C 0 1 N N R N N N 8.978 12.702 29.313 -3.170 0.026 -0.505 C16 LAB 4
LAB C17 C17 C 0 1 N N N N N N 8.656 14.053 29.876 -4.075 1.261 -0.414 C17 LAB 5
LAB S1 S1 S 0 1 N N N N N N 8.726 13.929 31.711 -5.663 0.598 0.180 S1 LAB 6
LAB C15 C15 C 0 1 N N R N N N 10.386 12.696 28.740 -1.954 0.230 0.402 C15 LAB 7
LAB O4 O4 O 0 1 N N N N N N 11.271 13.383 29.644 -2.410 0.358 1.756 O4 LAB 8
LAB C14 C14 C 0 1 N N N N N N 11.102 11.383 28.586 -1.028 -0.980 0.310 C14 LAB 9
LAB C13 C13 C 0 1 N N R N N N 12.146 11.323 27.507 -0.425 -1.123 -1.083 C13 LAB 10
LAB O2 O2 O 0 1 N N N N N N 13.386 11.857 28.123 0.728 -1.997 -1.070 O2 LAB 11
LAB C12 C12 C 0 1 N N N N N N 12.163 12.306 26.386 -0.017 0.250 -1.629 C12 LAB 12
LAB C11 C11 C 0 1 N N R N N N 11.491 13.582 26.718 0.043 1.245 -0.470 C11 LAB 13
LAB O3 O3 O 0 1 N N N N N N 10.379 13.579 27.670 -1.279 1.432 0.035 O3 LAB 14
LAB C10 C10 C 0 1 N N N N N N 11.207 14.709 25.648 0.630 2.577 -0.937 C10 LAB 15
LAB C9 C9 C 0 1 N N N N N N 11.174 16.083 26.191 1.699 3.044 0.039 C9 LAB 16
LAB C8 C8 C 0 1 N N S N N N 12.565 16.459 26.854 3.118 2.623 -0.342 C8 LAB 17
LAB C20 C20 C 0 1 N N N N N N 12.481 18.220 27.142 3.126 1.457 -1.309 C20 LAB 18
LAB C7 C7 C 0 1 N N N N N N 13.971 16.227 26.202 3.890 2.359 0.914 C7 LAB 19
LAB C6 C6 C 0 1 N N N N N N 14.975 15.591 26.632 4.644 1.394 1.288 C6 LAB 20
LAB C5 C5 C 0 1 N N N N N N 15.096 14.918 27.915 5.058 0.130 0.607 C5 LAB 21
LAB C4 C4 C 0 1 N N N N N N 15.757 13.501 27.812 4.283 -1.056 1.189 C4 LAB 22
LAB C3 C3 C 0 1 N N N N N N 16.035 12.761 28.937 4.166 -2.157 0.175 C3 LAB 23
LAB C19 C19 C 0 1 N N N N N N 17.367 13.231 29.591 5.385 -3.014 -0.110 C19 LAB 24
LAB C2 C2 C 0 1 N N N N N N 15.336 11.810 29.481 3.049 -2.426 -0.486 C2 LAB 25
LAB C1 C1 C 0 1 N N N N N N 14.083 11.139 29.037 1.797 -1.682 -0.314 C1 LAB 26
LAB O1 O1 O 0 1 N N N N N N 13.729 10.039 29.383 1.715 -0.802 0.513 O1 LAB 27
LAB HN1 HN1 H 0 1 N N N N N N 9.033 10.746 30.253 -3.410 -2.034 -0.109 HN1 LAB 28
LAB H16 H16 H 0 1 N N N N N N 8.243 12.450 28.535 -2.830 -0.088 -1.534 H16 LAB 29
LAB H171 1H17 H 0 0 N N N N N N 9.387 14.794 29.520 -3.669 1.982 0.296 H171 LAB 30
LAB H172 2H17 H 0 0 N N N N N N 7.656 14.375 29.551 -4.199 1.718 -1.395 H172 LAB 31
LAB HO4 HO4 H 0 1 N N N N N N 12.106 13.534 29.217 -1.700 0.491 2.399 HO4 LAB 32
LAB H141 1H14 H 0 0 N N N N N N 11.605 11.170 29.541 -0.241 -0.890 1.058 H141 LAB 33
LAB H142 2H14 H 0 0 N N N N N N 10.331 10.653 28.298 -1.607 -1.883 0.539 H142 LAB 34
LAB H13 H13 H 0 1 N N N N N N 11.999 10.297 27.138 -1.175 -1.556 -1.756 H13 LAB 35
LAB H121 1H12 H 0 0 N N N N N N 13.212 12.524 26.136 0.947 0.174 -2.122 H121 LAB 36
LAB H122 2H12 H 0 0 N N N N N N 11.615 11.855 25.545 -0.763 0.585 -2.354 H122 LAB 37
LAB H11 H11 H 0 1 N N N N N N 12.433 13.875 27.206 0.667 0.849 0.334 H11 LAB 38
LAB H101 1H10 H 0 0 N N N N N N 12.007 14.665 24.894 0.983 2.516 -1.956 H101 LAB 39
LAB H102 2H10 H 0 0 N N N N N N 10.205 14.509 25.241 -0.188 3.321 -0.929 H102 LAB 40
LAB H91 1H9 H 0 1 N N N N N N 10.964 16.787 25.373 1.667 4.139 0.107 H91 LAB 41
LAB H92 2H9 H 0 1 N N N N N N 10.389 16.141 26.959 1.472 2.648 1.037 H92 LAB 42
LAB H8 H8 H 0 1 N N N N N N 12.598 15.727 27.674 3.589 3.488 -0.848 H8 LAB 43
LAB H201 1H20 H 0 0 N N N N N N 12.464 18.415 28.225 2.599 1.738 -2.221 H201 LAB 44
LAB H202 2H20 H 0 0 N N N N N N 13.361 18.707 26.696 4.155 1.192 -1.551 H202 LAB 45
LAB H203 3H20 H 0 0 N N N N N N 11.566 18.623 26.683 2.629 0.601 -0.851 H203 LAB 46
LAB H7 H7 H 0 1 N N N N N N 14.103 16.683 25.232 3.787 3.166 1.681 H7 LAB 47
LAB H6 H6 H 0 1 N N N N N N 15.833 15.542 25.978 5.069 1.522 2.312 H6 LAB 48
LAB H51 1H5 H 0 1 N N N N N N 15.720 15.541 28.573 4.983 0.155 -0.465 H51 LAB 49
LAB H52 2H5 H 0 1 N N N N N N 14.079 14.777 28.309 6.129 -0.041 0.838 H52 LAB 50
LAB H41 1H4 H 0 1 N N N N N N 15.062 12.890 27.217 4.849 -1.439 2.052 H41 LAB 51
LAB H42 2H4 H 0 1 N N N N N N 16.756 13.723 27.409 3.316 -0.731 1.548 H42 LAB 52
LAB H191 1H19 H 0 0 N N N N N N 18.138 13.342 28.815 5.391 -3.871 0.563 H191 LAB 53
LAB H192 2H19 H 0 0 N N N N N N 17.209 14.198 30.091 5.351 -3.362 -1.142 H192 LAB 54
LAB H193 3H19 H 0 0 N N N N N N 17.696 12.485 30.330 6.288 -2.424 0.045 H193 LAB 55
LAB H2 H2 H 0 1 N N N N N N 15.732 11.443 30.416 3.066 -3.251 -1.201 H2 LAB 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LAB O5 C18 DOUB N N 1
LAB C18 N1 SING N N 2
LAB C18 S1 SING N N 3
LAB N1 C16 SING N N 4
LAB N1 HN1 SING N N 5
LAB C16 C15 SING N N 6
LAB C16 C17 SING N N 7
LAB C16 H16 SING N N 8
LAB C17 S1 SING N N 9
LAB C17 H171 SING N N 10
LAB C17 H172 SING N N 11
LAB C15 O3 SING N N 12
LAB C15 C14 SING N N 13
LAB C15 O4 SING N N 14
LAB O4 HO4 SING N N 15
LAB C14 C13 SING N N 16
LAB C14 H141 SING N N 17
LAB C14 H142 SING N N 18
LAB C13 C12 SING N N 19
LAB C13 O2 SING N N 20
LAB C13 H13 SING N N 21
LAB O2 C1 SING N N 22
LAB C12 C11 SING N N 23
LAB C12 H121 SING N N 24
LAB C12 H122 SING N N 25
LAB C11 C10 SING N N 26
LAB C11 O3 SING N N 27
LAB C11 H11 SING N N 28
LAB C10 C9 SING N N 29
LAB C10 H101 SING N N 30
LAB C10 H102 SING N N 31
LAB C9 C8 SING N N 32
LAB C9 H91 SING N N 33
LAB C9 H92 SING N N 34
LAB C8 C7 SING N N 35
LAB C8 C20 SING N N 36
LAB C8 H8 SING N N 37
LAB C20 H201 SING N N 38
LAB C20 H202 SING N N 39
LAB C20 H203 SING N N 40
LAB C7 C6 DOUB N Z 41
LAB C7 H7 SING N N 42
LAB C6 C5 SING N N 43
LAB C6 H6 SING N N 44
LAB C5 C4 SING N N 45
LAB C5 H51 SING N N 46
LAB C5 H52 SING N N 47
LAB C4 C3 SING N N 48
LAB C4 H41 SING N N 49
LAB C4 H42 SING N N 50
LAB C3 C2 DOUB N Z 51
LAB C3 C19 SING N N 52
LAB C19 H191 SING N N 53
LAB C19 H192 SING N N 54
LAB C19 H193 SING N N 55
LAB C2 C1 SING N N 56
LAB C2 H2 SING N N 57
LAB C1 O1 DOUB N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LAB SMILES ACDLabs 10.04 O=C3OC2CC(OC(O)(C1NC(=O)SC1)C2)CCC(C=CCCC(=C3)C)C
LAB SMILES_CANONICAL CACTVS 3.341 C[C@H]\1CC[C@@H]2C[C@H](C[C@@](O)(O2)[C@@H]3CSC(=O)N3)OC(=O)\C=C(C)/CC\C=C\1
LAB SMILES CACTVS 3.341 C[CH]1CC[CH]2C[CH](C[C](O)(O2)[CH]3CSC(=O)N3)OC(=O)C=C(C)CCC=C1
LAB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H]\1CC[C@@H]2C[C@H](C[C@@](O2)([C@@H]3CSC(=O)N3)O)OC(=O)\C=C(/CC\C=C1)\C
LAB SMILES "OpenEye OEToolkits" 1.5.0 CC1CCC2CC(CC(O2)(C3CSC(=O)N3)O)OC(=O)C=C(CCC=C1)C
LAB InChI InChI 1.03 InChI=1S/C20H29NO5S/c1-13-5-3-4-6-14(2)9-18(22)25-16-10-15(8-7-13)26-20(24,11-16)17-12-27-19(23)21-17/h3,5,9,13,15-17,24H,4,6-8,10-12H2,1-2H3,(H,21,23)/b5-3-,14-9-/t13-,15-,16-,17+,20-/m1/s1
LAB InChIKey InChI 1.03 NSHPHXHGRHSMIK-JRIKCGFMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LAB "SYSTEMATIC NAME" ACDLabs 10.04 (4R)-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]heptadeca-4,8-dien-15-yl]-1,3-thiazolidin-2-one
LAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4R)-4-[(1R,4Z,8Z,10S,13R,15R)-15-hydroxy-5,10-dimethyl-3-oxo-2,14-dioxabicyclo[11.3.1]heptadeca-4,8-dien-15-yl]-1,3-thiazolidin-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LAB 'Create component' 2007-06-20 RCSB
LAB 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id LAB
_pdbe_chem_comp_drugbank_details.drugbank_id DB08080
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Latrunculin B'
_pdbe_chem_comp_drugbank_details.description
'Latrunculin B is a 14-membered macrolide attached to 2-thiazolidinone moiety, isolated from Red Sea sponge _Latrunculia magnifica_.'
_pdbe_chem_comp_drugbank_details.cas_number 76343-94-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
LAB '(+)-latrunculin B' DrugBank ?
LAB LAT-B DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id LAB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08080
_pdbe_chem_comp_drugbank_classification.parent 'Macrolides and analogues'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Macrolides and analogues'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
LAB DB08080 'Actin, alpha skeletal muscle' Humans P68133 unknown 1
LAB DB08080 'Myocardin-related transcription factor A' Humans Q969V6 unknown 2
LAB DB08080 'Protein spire homolog 2' Humans Q8WWL2 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LAB O5 O 11.398 6.707 1
LAB C18 C 11.555 5.216 2
LAB N1 N 10.441 4.212 3
LAB C16 C 11.051 2.842 4
LAB C17 C 12.542 2.998 5
LAB S1 S 12.854 4.466 6
LAB C15 C 10.301 1.543 7
LAB O4 O 11.801 1.543 8
LAB C14 C 10.301 0.043 9
LAB C13 C 9.002 -0.707 10
LAB O2 O 9.002 -2.207 11
LAB C12 C 7.702 0.043 12
LAB C11 C 7.702 1.543 13
LAB O3 O 9.002 2.293 14
LAB C10 C 6.404 2.293 15
LAB C9 C 5.104 1.543 16
LAB C8 C 5.104 0.043 17
LAB C20 C 6.404 -0.707 18
LAB C7 C 3.805 -0.707 19
LAB C6 C 3.805 -2.207 20
LAB C5 C 5.104 -2.957 21
LAB C4 C 5.104 -4.457 22
LAB C3 C 6.404 -5.207 23
LAB C19 C 6.404 -6.707 24
LAB C2 C 7.702 -4.457 25
LAB C1 C 7.702 -2.957 26
LAB O1 O 6.404 -2.207 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LAB O5 C18 DOUBLE NONE 1
LAB C18 N1 SINGLE NONE 2
LAB C18 S1 SINGLE NONE 3
LAB N1 C16 SINGLE NONE 4
LAB C16 C15 SINGLE NONE 5
LAB C16 C17 SINGLE BEGINWEDGE 6
LAB C17 S1 SINGLE NONE 7
LAB C15 O3 SINGLE NONE 8
LAB C15 C14 SINGLE NONE 9
LAB C15 O4 SINGLE BEGINDASH 10
LAB C14 C13 SINGLE NONE 11
LAB C13 C12 SINGLE NONE 12
LAB C13 O2 SINGLE NONE 13
LAB O2 C1 SINGLE NONE 14
LAB C12 C11 SINGLE NONE 15
LAB C11 C10 SINGLE NONE 16
LAB C11 O3 SINGLE NONE 17
LAB C10 C9 SINGLE NONE 18
LAB C9 C8 SINGLE NONE 19
LAB C8 C7 SINGLE ENDUPRIGHT 20
LAB C8 C20 SINGLE BEGINDASH 21
LAB C7 C6 DOUBLE NONE 22
LAB C6 C5 SINGLE ENDDOWNRIGHT 23
LAB C5 C4 SINGLE NONE 24
LAB C4 C3 SINGLE ENDUPRIGHT 25
LAB C3 C2 DOUBLE NONE 26
LAB C3 C19 SINGLE ENDUPRIGHT 27
LAB C2 C1 SINGLE ENDDOWNRIGHT 28
LAB C1 O1 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LAB MurckoScaffold S1 scaffold 'O=C1/C=C\CC/C=C\CCC[C@@H]2C[C@H](CC([C@@H]3CSC(=O)N3)O2)O1' InChI=1S/C18H25NO4S/c20-17-9-7-5-3-1-2-4-6-8-13-10-14(23-17)11-16(22-13)15-12-24-18(21)19-15/h1-2,7,9,13-16H,3-6,8,10-12H2,(H,19,21)/b2-1-,9-7-/t13-,14-,15+,16-/m1/s1 LZIPWGYECMEHRC-FRUWSOQBSA-N
LAB pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LAB O5 S1 1
LAB C18 S1 1
LAB N1 S1 1
LAB C16 S1 1
LAB C17 S1 1
LAB S1 S1 1
LAB C15 S1 1
LAB C14 S1 1
LAB C13 S1 1
LAB O2 S1 1
LAB C12 S1 1
LAB C11 S1 1
LAB O3 S1 1
LAB C10 S1 1
LAB C9 S1 1
LAB C8 S1 1
LAB C7 S1 1
LAB C6 S1 1
LAB C5 S1 1
LAB C4 S1 1
LAB C3 S1 1
LAB C2 S1 1
LAB C1 S1 1
LAB O1 S1 1
LAB C12 F1 1
LAB C11 F1 1
LAB O3 F1 1
LAB C15 F1 1
LAB C14 F1 1
LAB C13 F1 1
LAB O4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LAB
_pdbe_chem_comp_rdkit_properties.exactmw 395.177
_pdbe_chem_comp_rdkit_properties.amw 395.521
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.700
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 205.183
_pdbe_chem_comp_rdkit_properties.tpsa 84.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.303
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.244
_pdbe_chem_comp_rdkit_properties.chi0v 13.713
_pdbe_chem_comp_rdkit_properties.chi1v 7.601
_pdbe_chem_comp_rdkit_properties.chi2v 3.222
_pdbe_chem_comp_rdkit_properties.chi3v 3.222
_pdbe_chem_comp_rdkit_properties.chi4v 2.154
_pdbe_chem_comp_rdkit_properties.chi0n 41.897
_pdbe_chem_comp_rdkit_properties.chi1n 21.140
_pdbe_chem_comp_rdkit_properties.chi2n 2.661
_pdbe_chem_comp_rdkit_properties.chi3n 2.661
_pdbe_chem_comp_rdkit_properties.chi4n 1.653
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 4.873
_pdbe_chem_comp_rdkit_properties.kappa2 8.796
_pdbe_chem_comp_rdkit_properties.kappa3 5.589
_pdbe_chem_comp_rdkit_properties.Phi 1.588
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LAB UniChem DrugBank DB08080
LAB UniChem ChEBI 49703
LAB UniChem ZINC ZINC000005751767
LAB UniChem fdasrs LW7U308U7U
LAB UniChem NMRShiftDB 60027877
LAB UniChem Nikkaji J825.707H
LAB UniChem BindingDb 50508923
LAB UniChem 'EPA CompTox Dashboard' DTXSID10881387
LAB UniChem MetaboLights MTBLC49703
LAB UniChem MedChemExpress HY-101848
LAB UniChem 'Probes And Drugs' PD004807
LAB UniChem PubChem 6436219
LAB UniChem eMolecules 1934786
LAB UniChem SureChEMBL SCHEMBL2531366
LAB UniChem 'PubChem TPHARMA' 14854456
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LAB O5 5.195 2.136 -3.145 ETKDGv3 1
LAB C18 4.983 1.109 -2.448 ETKDGv3 2
LAB N1 3.721 0.475 -2.417 ETKDGv3 3
LAB C16 3.660 -0.642 -1.485 ETKDGv3 4
LAB C17 4.889 -0.512 -0.550 ETKDGv3 5
LAB S1 6.225 0.389 -1.414 ETKDGv3 6
LAB C15 2.300 -0.667 -0.726 ETKDGv3 7
LAB O4 1.267 -0.798 -1.679 ETKDGv3 8
LAB C14 2.247 -1.908 0.216 ETKDGv3 9
LAB C13 1.070 -1.863 1.204 ETKDGv3 10
LAB O2 -0.167 -2.157 0.539 ETKDGv3 11
LAB C12 1.009 -0.482 1.860 ETKDGv3 12
LAB C11 0.965 0.587 0.758 ETKDGv3 13
LAB O3 2.170 0.552 0.012 ETKDGv3 14
LAB C10 0.750 2.000 1.335 ETKDGv3 15
LAB C9 -0.723 2.262 1.733 ETKDGv3 16
LAB C8 -1.558 3.009 0.660 ETKDGv3 17
LAB C20 -3.034 3.105 1.065 ETKDGv3 18
LAB C7 -1.387 2.512 -0.768 ETKDGv3 19
LAB C6 -1.819 1.351 -1.304 ETKDGv3 20
LAB C5 -2.551 0.250 -0.575 ETKDGv3 21
LAB C4 -2.353 -1.090 -1.298 ETKDGv3 22
LAB C3 -3.066 -2.217 -0.584 ETKDGv3 23
LAB C19 -4.400 -2.672 -1.117 ETKDGv3 24
LAB C2 -2.604 -2.807 0.537 ETKDGv3 25
LAB C1 -1.331 -2.523 1.232 ETKDGv3 26
LAB O1 -1.288 -2.699 2.480 ETKDGv3 27
LAB HN1 2.992 0.671 -3.138 ETKDGv3 28
LAB H16 3.764 -1.582 -2.072 ETKDGv3 29
LAB H171 5.261 -1.515 -0.252 ETKDGv3 30
LAB H172 4.637 0.062 0.367 ETKDGv3 31
LAB HO4 1.071 0.102 -2.049 ETKDGv3 32
LAB H141 3.175 -1.969 0.823 ETKDGv3 33
LAB H142 2.189 -2.841 -0.387 ETKDGv3 34
LAB H13 1.254 -2.632 1.987 ETKDGv3 35
LAB H121 0.120 -0.421 2.521 ETKDGv3 36
LAB H122 1.912 -0.330 2.493 ETKDGv3 37
LAB H11 0.111 0.375 0.097 ETKDGv3 38
LAB H101 1.079 2.760 0.593 ETKDGv3 39
LAB H102 1.403 2.130 2.226 ETKDGv3 40
LAB H91 -0.714 2.900 2.644 ETKDGv3 41
LAB H92 -1.229 1.328 2.045 ETKDGv3 42
LAB H8 -1.178 4.056 0.657 ETKDGv3 43
LAB H201 -3.470 2.103 1.250 ETKDGv3 44
LAB H202 -3.621 3.615 0.271 ETKDGv3 45
LAB H203 -3.130 3.697 2.000 ETKDGv3 46
LAB H7 -0.870 3.189 -1.443 ETKDGv3 47
LAB H6 -1.597 1.191 -2.357 ETKDGv3 48
LAB H51 -2.184 0.146 0.462 ETKDGv3 49
LAB H52 -3.633 0.498 -0.544 ETKDGv3 50
LAB H41 -2.751 -0.993 -2.332 ETKDGv3 51
LAB H42 -1.279 -1.324 -1.420 ETKDGv3 52
LAB H191 -4.343 -3.743 -1.405 ETKDGv3 53
LAB H192 -5.181 -2.546 -0.337 ETKDGv3 54
LAB H193 -4.712 -2.087 -2.008 ETKDGv3 55
LAB H2 -3.242 -3.537 1.024 ETKDGv3 56
#