data_L1W
#
_chem_comp.id L1W
_chem_comp.name
~{N}-[3-[1-[[4-[5-[(4-hydroxyphenyl)methyl]-6-oxidanylidene-2-phenyl-1~{H}-pyrazin-3-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C39 H38 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-15
_chem_comp.pdbx_modified_date 2019-10-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 654.757
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L1W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6S9X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L1W CAA C1 C 0 1 N N N N N N 1.480 -0.277 15.366 -6.383 0.796 0.918 CAA L1W 1
L1W CAB C2 C 0 1 N N N N N N 2.423 -0.631 16.321 -7.215 -0.262 1.345 CAB L1W 2
L1W CAD C3 C 0 1 N N N N N N 4.018 0.773 15.212 -5.601 -1.781 0.584 CAD L1W 3
L1W CAE C4 C 0 1 N N N N N N 3.043 1.115 14.253 -4.806 -0.710 0.183 CAE L1W 4
L1W CAG C5 C 0 1 Y N N N N N 5.335 1.233 15.235 -5.136 -3.166 0.384 CAG L1W 5
L1W CAH C6 C 0 1 Y N N N N N 3.317 1.998 13.191 -3.490 -0.965 -0.449 CAH L1W 6
L1W CAI C7 C 0 1 Y N N N N N 5.794 1.888 16.370 -5.156 -4.074 1.446 CAI L1W 7
L1W CAJ C8 C 0 1 Y N N N N N 7.105 2.347 16.429 -4.720 -5.368 1.251 CAJ L1W 8
L1W CAK C9 C 0 1 Y N N N N N 7.963 2.138 15.357 -4.264 -5.768 0.007 CAK L1W 9
L1W CAL C10 C 0 1 Y N N N N N 7.507 1.471 14.223 -4.242 -4.874 -1.049 CAL L1W 10
L1W CAM C11 C 0 1 Y N N N N N 6.199 1.011 14.164 -4.679 -3.579 -0.871 CAM L1W 11
L1W CAN C12 C 0 1 Y N N N N N 3.887 3.248 13.426 -3.163 -0.352 -1.657 CAN L1W 12
L1W CAO C13 C 0 1 Y N N N N N 4.168 4.115 12.375 -1.935 -0.593 -2.240 CAO L1W 13
L1W CAP C14 C 0 1 Y N N N N N 3.870 3.769 11.062 -1.031 -1.442 -1.627 CAP L1W 14
L1W CAQ C15 C 0 1 Y N N N N N 3.302 2.523 10.812 -1.350 -2.054 -0.428 CAQ L1W 15
L1W CAR C16 C 0 1 Y N N N N N 3.024 1.652 11.870 -2.572 -1.816 0.167 CAR L1W 16
L1W CAS C17 C 0 1 N N N N N N 4.182 4.663 10.026 0.308 -1.701 -2.269 CAS L1W 17
L1W CAU C18 C 0 1 N N N N N N 2.263 6.007 9.661 1.538 -0.884 -0.351 CAU L1W 18
L1W CAV C19 C 0 1 N N N N N N 1.145 6.409 8.718 2.440 0.248 0.146 CAV L1W 19
L1W CAW C20 C 0 1 N N N N N N 1.720 6.886 7.383 3.758 0.222 -0.633 CAW L1W 20
L1W CAX C21 C 0 1 N N N N N N 2.607 5.802 6.816 3.460 0.353 -2.129 CAX L1W 21
L1W CAY C22 C 0 1 N N N N N N 3.678 5.467 7.841 2.528 -0.781 -2.560 CAY L1W 22
L1W CBA C23 C 0 1 N N N N N N -0.525 6.704 6.180 4.287 2.644 -0.284 CBA L1W 23
L1W CBC C24 C 0 1 Y N N N N N -0.413 8.363 4.856 6.316 2.528 0.616 CBC L1W 24
L1W CBD C25 C 0 1 Y N N N N N 0.725 8.326 5.567 5.871 1.228 0.366 CBD L1W 25
L1W CBE C26 C 0 1 Y N N N N N -0.628 9.296 3.934 7.564 2.736 1.183 CBE L1W 26
L1W CBF C27 C 0 1 Y N N N N N 0.325 10.268 3.681 8.368 1.658 1.494 CBF L1W 27
L1W CBG C28 C 0 1 Y N N N N N 1.499 10.249 4.420 7.931 0.363 1.241 CBG L1W 28
L1W CBH C29 C 0 1 Y N N N N N 1.681 9.241 5.365 6.681 0.148 0.680 CBH L1W 29
L1W CBJ C30 C 0 1 N N N N N N 2.185 12.466 4.407 8.747 -1.824 0.776 CBJ L1W 30
L1W CBK C31 C 0 1 N N N N N N 3.317 13.407 3.990 9.703 -2.955 1.059 CBK L1W 31
L1W CBL C32 C 0 1 N N N N N N 3.366 13.437 2.447 9.493 -4.069 0.032 CBL L1W 32
L1W CBP C33 C 0 1 N N N N N N 0.224 -0.873 15.521 -6.829 2.223 1.110 CBP L1W 33
L1W CBQ C34 C 0 1 Y N N N N N -0.843 -0.347 14.795 -5.772 3.155 0.576 CBQ L1W 34
L1W CBR C35 C 0 1 Y N N N N N -0.904 -0.412 13.407 -4.759 3.598 1.406 CBR L1W 35
L1W CBS C36 C 0 1 Y N N N N N -2.007 0.105 12.733 -3.786 4.448 0.918 CBS L1W 36
L1W CBT C37 C 0 1 Y N N N N N -3.062 0.670 13.439 -3.826 4.858 -0.407 CBT L1W 37
L1W CBU C38 C 0 1 Y N N N N N -3.012 0.719 14.826 -4.843 4.412 -1.238 CBU L1W 38
L1W CBV C39 C 0 1 Y N N N N N -1.908 0.204 15.496 -5.814 3.562 -0.745 CBV L1W 39
L1W NAC N1 N 0 1 N N N N N N 3.697 -0.100 16.244 -6.812 -1.539 1.172 NAC L1W 40
L1W NAF N2 N 0 1 N N N N N N 1.808 0.571 14.362 -5.223 0.546 0.363 NAF L1W 41
L1W NAT N3 N 0 1 N N N N N N 3.087 4.941 9.083 1.282 -0.713 -1.787 NAT L1W 42
L1W NAZ N4 N 0 1 N N N N N N 0.652 7.287 6.408 4.604 1.338 -0.201 NAZ L1W 43
L1W NBB N5 N 0 1 N N N N N N -1.187 7.357 5.241 5.299 3.388 0.200 NBB L1W 44
L1W NBI N6 N 0 1 N N N N N N 2.433 11.168 4.166 8.752 -0.726 1.559 NBI L1W 45
L1W OBM O1 O 0 1 N N N N N N 1.157 12.904 4.921 7.975 -1.902 -0.155 OBM L1W 46
L1W OBN O2 O 0 1 N N N N N N -0.979 5.714 6.750 3.247 3.086 -0.734 OBN L1W 47
L1W OBO O3 O 0 1 N N N N N N 2.142 -1.406 17.235 -8.292 -0.024 1.867 OBO L1W 48
L1W OBW O4 O 0 1 N N N N N N -4.142 1.174 12.780 -2.870 5.695 -0.889 OBW L1W 49
L1W H2 H2 H 0 1 N N N N N N 5.131 2.041 17.209 -5.511 -3.763 2.418 H2 L1W 50
L1W H3 H3 H 0 1 N N N N N N 7.456 2.866 17.309 -4.735 -6.070 2.071 H3 L1W 51
L1W H4 H4 H 0 1 N N N N N N 8.982 2.492 15.403 -3.924 -6.782 -0.139 H4 L1W 52
L1W H5 H5 H 0 1 N N N N N N 8.173 1.311 13.388 -3.884 -5.194 -2.017 H5 L1W 53
L1W H6 H6 H 0 1 N N N N N N 5.851 0.482 13.289 -4.661 -2.883 -1.696 H6 L1W 54
L1W H7 H7 H 0 1 N N N N N N 4.114 3.548 14.438 -3.868 0.311 -2.136 H7 L1W 55
L1W H8 H8 H 0 1 N N N N N N 4.625 5.072 12.582 -1.680 -0.119 -3.176 H8 L1W 56
L1W H9 H9 H 0 1 N N N N N N 3.075 2.228 9.798 -0.640 -2.716 0.045 H9 L1W 57
L1W H10 H10 H 0 1 N N N N N N 2.574 0.693 11.662 -2.820 -2.294 1.103 H10 L1W 58
L1W H11 H11 H 0 1 N N N N N N 5.023 4.242 9.455 0.648 -2.703 -2.008 H11 L1W 59
L1W H12 H12 H 0 1 N N N N N N 4.489 5.616 10.481 0.214 -1.620 -3.352 H12 L1W 60
L1W H13 H13 H 0 1 N N N N N N 2.898 6.883 9.859 2.029 -1.842 -0.181 H13 L1W 61
L1W H14 H14 H 0 1 N N N N N N 1.825 5.650 10.605 0.592 -0.859 0.192 H14 L1W 62
L1W H15 H15 H 0 1 N N N N N N 0.562 7.223 9.173 1.943 1.205 -0.011 H15 L1W 63
L1W H16 H16 H 0 1 N N N N N N 0.490 5.543 8.542 2.642 0.113 1.209 H16 L1W 64
L1W H17 H17 H 0 1 N N N N N N 2.347 7.767 7.584 4.274 -0.719 -0.445 H17 L1W 65
L1W H18 H18 H 0 1 N N N N N N 2.006 4.906 6.601 2.980 1.312 -2.322 H18 L1W 66
L1W H19 H19 H 0 1 N N N N N N 3.080 6.157 5.889 4.392 0.293 -2.692 H19 L1W 67
L1W H20 H20 H 0 1 N N N N N N 4.354 4.710 7.418 2.303 -0.683 -3.622 H20 L1W 68
L1W H21 H21 H 0 1 N N N N N N 4.248 6.378 8.074 3.015 -1.740 -2.380 H21 L1W 69
L1W H22 H22 H 0 1 N N N N N N -1.554 9.296 3.378 7.907 3.741 1.380 H22 L1W 70
L1W H23 H23 H 0 1 N N N N N N 0.158 11.023 2.927 9.341 1.822 1.935 H23 L1W 71
L1W H24 H24 H 0 1 N N N N N N 2.596 9.198 5.936 6.341 -0.859 0.484 H24 L1W 72
L1W H25 H25 H 0 1 N N N N N N 4.274 13.039 4.387 10.727 -2.589 0.995 H25 L1W 73
L1W H26 H26 H 0 1 N N N N N N 3.124 14.418 4.377 9.518 -3.344 2.060 H26 L1W 74
L1W H27 H27 H 0 1 N N N N N N 4.173 14.108 2.118 8.468 -4.434 0.096 H27 L1W 75
L1W H28 H28 H 0 1 N N N N N N 3.555 12.422 2.066 9.677 -3.679 -0.969 H28 L1W 76
L1W H29 H29 H 0 1 N N N N N N 2.404 13.802 2.057 10.184 -4.887 0.236 H29 L1W 77
L1W H30 H30 H 0 1 N N N N N N -0.041 -0.806 16.587 -7.763 2.387 0.572 H30 L1W 78
L1W H31 H31 H 0 1 N N N N N N 0.326 -1.930 15.234 -6.982 2.417 2.171 H31 L1W 79
L1W H32 H32 H 0 1 N N N N N N -0.095 -0.864 12.852 -4.728 3.279 2.438 H32 L1W 80
L1W H33 H33 H 0 1 N N N N N N -2.043 0.067 11.654 -2.995 4.794 1.568 H33 L1W 81
L1W H34 H34 H 0 1 N N N N N N -3.828 1.156 15.382 -4.876 4.730 -2.270 H34 L1W 82
L1W H35 H35 H 0 1 N N N N N N -1.878 0.233 16.575 -6.603 3.211 -1.393 H35 L1W 83
L1W H37 H37 H 0 1 N N N N N N -2.096 7.135 4.889 5.320 4.356 0.249 H37 L1W 84
L1W H38 H38 H 0 1 N N N N N N 3.319 10.890 3.796 9.323 -0.691 2.342 H38 L1W 85
L1W H39 H39 H 0 1 N N N N N N -4.765 1.519 13.409 -2.100 5.241 -1.259 H39 L1W 86
L1W H1 H1 H 0 1 N N N N N N 4.385 -0.343 16.928 -7.374 -2.275 1.460 H1 L1W 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L1W CBL CBK SING N N 1
L1W CBF CBE DOUB Y N 2
L1W CBF CBG SING Y N 3
L1W CBE CBC SING Y N 4
L1W CBK CBJ SING N N 5
L1W NBI CBJ SING N N 6
L1W NBI CBG SING N N 7
L1W CBJ OBM DOUB N N 8
L1W CBG CBH DOUB Y N 9
L1W CBC NBB SING N N 10
L1W CBC CBD DOUB Y N 11
L1W NBB CBA SING N N 12
L1W CBH CBD SING Y N 13
L1W CBD NAZ SING N N 14
L1W CBA NAZ SING N N 15
L1W CBA OBN DOUB N N 16
L1W NAZ CAW SING N N 17
L1W CAX CAW SING N N 18
L1W CAX CAY SING N N 19
L1W CAW CAV SING N N 20
L1W CAY NAT SING N N 21
L1W CAV CAU SING N N 22
L1W NAT CAU SING N N 23
L1W NAT CAS SING N N 24
L1W CAS CAP SING N N 25
L1W CAQ CAP DOUB Y N 26
L1W CAQ CAR SING Y N 27
L1W CAP CAO SING Y N 28
L1W CAR CAH DOUB Y N 29
L1W CAO CAN DOUB Y N 30
L1W CBS CBR DOUB Y N 31
L1W CBS CBT SING Y N 32
L1W OBW CBT SING N N 33
L1W CAH CAN SING Y N 34
L1W CAH CAE SING N N 35
L1W CBR CBQ SING Y N 36
L1W CBT CBU DOUB Y N 37
L1W CAM CAL DOUB Y N 38
L1W CAM CAG SING Y N 39
L1W CAL CAK SING Y N 40
L1W CAE NAF SING N N 41
L1W CAE CAD DOUB N N 42
L1W NAF CAA DOUB N N 43
L1W CBQ CBV DOUB Y N 44
L1W CBQ CBP SING N N 45
L1W CBU CBV SING Y N 46
L1W CAD CAG SING N N 47
L1W CAD NAC SING N N 48
L1W CAG CAI DOUB Y N 49
L1W CAK CAJ DOUB Y N 50
L1W CAA CBP SING N N 51
L1W CAA CAB SING N N 52
L1W NAC CAB SING N N 53
L1W CAB OBO DOUB N N 54
L1W CAI CAJ SING Y N 55
L1W CAI H2 SING N N 56
L1W CAJ H3 SING N N 57
L1W CAK H4 SING N N 58
L1W CAL H5 SING N N 59
L1W CAM H6 SING N N 60
L1W CAN H7 SING N N 61
L1W CAO H8 SING N N 62
L1W CAQ H9 SING N N 63
L1W CAR H10 SING N N 64
L1W CAS H11 SING N N 65
L1W CAS H12 SING N N 66
L1W CAU H13 SING N N 67
L1W CAU H14 SING N N 68
L1W CAV H15 SING N N 69
L1W CAV H16 SING N N 70
L1W CAW H17 SING N N 71
L1W CAX H18 SING N N 72
L1W CAX H19 SING N N 73
L1W CAY H20 SING N N 74
L1W CAY H21 SING N N 75
L1W CBE H22 SING N N 76
L1W CBF H23 SING N N 77
L1W CBH H24 SING N N 78
L1W CBK H25 SING N N 79
L1W CBK H26 SING N N 80
L1W CBL H27 SING N N 81
L1W CBL H28 SING N N 82
L1W CBL H29 SING N N 83
L1W CBP H30 SING N N 84
L1W CBP H31 SING N N 85
L1W CBR H32 SING N N 86
L1W CBS H33 SING N N 87
L1W CBU H34 SING N N 88
L1W CBV H35 SING N N 89
L1W NBB H37 SING N N 90
L1W NBI H38 SING N N 91
L1W OBW H39 SING N N 92
L1W NAC H1 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L1W InChI InChI 1.03 InChI=1S/C39H38N6O4/c1-2-35(47)40-29-14-17-32-34(23-29)45(39(49)42-32)30-18-20-44(21-19-30)24-26-8-12-28(13-9-26)36-37(27-6-4-3-5-7-27)43-38(48)33(41-36)22-25-10-15-31(46)16-11-25/h3-17,23,30,46H,2,18-22,24H2,1H3,(H,40,47)(H,42,49)(H,43,48)
L1W InChIKey InChI 1.03 LMPCSGMPKCSYTR-UHFFFAOYSA-N
L1W SMILES_CANONICAL CACTVS 3.385 CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(O)cc6)c7ccccc7)c2c1
L1W SMILES CACTVS 3.385 CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(O)cc6)c7ccccc7)c2c1
L1W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(cc6)O)c7ccccc7
L1W SMILES "OpenEye OEToolkits" 2.0.7 CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(cc6)O)c7ccccc7
#
_pdbx_chem_comp_identifier.comp_id L1W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[3-[1-[[4-[5-[(4-hydroxyphenyl)methyl]-6-oxidanylidene-2-phenyl-1~{H}-pyrazin-3-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L1W 'Create component' 2019-07-15 PDBE
L1W 'Other modification' 2019-07-16 EBI
L1W 'Initial release' 2019-10-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
L1W CAA C 22.418 1.770 1
L1W CAB C 22.884 3.196 2
L1W CAD C 20.415 4.003 3
L1W CAE C 19.948 2.577 4
L1W CAG C 19.413 5.119 5
L1W CAH C 18.481 2.268 6
L1W CAI C 17.945 4.810 7
L1W CAJ C 16.943 5.926 8
L1W CAK C 17.409 7.352 9
L1W CAL C 18.877 7.662 10
L1W CAM C 19.879 6.545 11
L1W CAN C 18.015 0.842 12
L1W CAO C 16.547 0.533 13
L1W CAP C 15.545 1.649 14
L1W CAQ C 16.011 3.075 15
L1W CAR C 17.479 3.384 16
L1W CAS C 14.078 1.340 17
L1W CAU C 14.613 -1.202 18
L1W CAV C 14.147 -2.628 19
L1W CAW C 12.680 -2.938 20
L1W CAX C 11.678 -1.821 21
L1W CAY C 12.144 -0.395 22
L1W CBA C 13.089 -5.570 23
L1W CBC C 10.794 -6.320 24
L1W CBD C 10.794 -4.820 25
L1W CBE C 9.495 -7.070 26
L1W CBF C 8.196 -6.320 27
L1W CBG C 8.196 -4.820 28
L1W CBH C 9.495 -4.070 29
L1W CBJ C 5.598 -4.820 30
L1W CBK C 4.299 -4.070 31
L1W CBL C 3.000 -4.820 32
L1W CBP C 23.420 0.653 33
L1W CBQ C 22.954 -0.772 34
L1W CBR C 21.486 -1.082 35
L1W CBS C 21.020 -2.507 36
L1W CBT C 22.022 -3.624 37
L1W CBU C 23.490 -3.315 38
L1W CBV C 23.956 -1.889 39
L1W NAC N 21.882 4.312 40
L1W NAF N 20.950 1.461 41
L1W NAT N 13.612 -0.086 42
L1W NAZ N 12.214 -4.363 43
L1W NBB N 12.214 -6.778 44
L1W NBI N 6.897 -4.070 45
L1W OBM O 5.598 -6.320 46
L1W OBN O 14.589 -5.570 47
L1W OBO O 24.352 3.505 48
L1W OBW O 21.556 -5.050 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
L1W CBL CBK SINGLE NONE 1
L1W CBF CBE DOUBLE NONE 2
L1W CBF CBG SINGLE NONE 3
L1W CBE CBC SINGLE NONE 4
L1W CBK CBJ SINGLE NONE 5
L1W NBI CBJ SINGLE NONE 6
L1W NBI CBG SINGLE NONE 7
L1W CBJ OBM DOUBLE NONE 8
L1W CBG CBH DOUBLE NONE 9
L1W CBC NBB SINGLE NONE 10
L1W CBC CBD DOUBLE NONE 11
L1W NBB CBA SINGLE NONE 12
L1W CBH CBD SINGLE NONE 13
L1W CBD NAZ SINGLE NONE 14
L1W CBA NAZ SINGLE NONE 15
L1W CBA OBN DOUBLE NONE 16
L1W NAZ CAW SINGLE NONE 17
L1W CAX CAW SINGLE NONE 18
L1W CAX CAY SINGLE NONE 19
L1W CAW CAV SINGLE NONE 20
L1W CAY NAT SINGLE NONE 21
L1W CAV CAU SINGLE NONE 22
L1W NAT CAU SINGLE NONE 23
L1W NAT CAS SINGLE NONE 24
L1W CAS CAP SINGLE NONE 25
L1W CAQ CAP DOUBLE NONE 26
L1W CAQ CAR SINGLE NONE 27
L1W CAP CAO SINGLE NONE 28
L1W CAR CAH DOUBLE NONE 29
L1W CAO CAN DOUBLE NONE 30
L1W CBS CBR DOUBLE NONE 31
L1W CBS CBT SINGLE NONE 32
L1W OBW CBT SINGLE NONE 33
L1W CAH CAN SINGLE NONE 34
L1W CAH CAE SINGLE NONE 35
L1W CBR CBQ SINGLE NONE 36
L1W CBT CBU DOUBLE NONE 37
L1W CAM CAL DOUBLE NONE 38
L1W CAM CAG SINGLE NONE 39
L1W CAL CAK SINGLE NONE 40
L1W CAE NAF SINGLE NONE 41
L1W CAE CAD DOUBLE NONE 42
L1W NAF CAA DOUBLE NONE 43
L1W CBQ CBV DOUBLE NONE 44
L1W CBQ CBP SINGLE NONE 45
L1W CBU CBV SINGLE NONE 46
L1W CAD CAG SINGLE NONE 47
L1W CAD NAC SINGLE NONE 48
L1W CAG CAI DOUBLE NONE 49
L1W CAK CAJ DOUBLE NONE 50
L1W CAA CBP SINGLE NONE 51
L1W CAA CAB SINGLE NONE 52
L1W NAC CAB SINGLE NONE 53
L1W CAB OBO DOUBLE NONE 54
L1W CAI CAJ SINGLE NONE 55
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
L1W MurckoScaffold S1 scaffold 'O=c1[nH]c(-c2ccccc2)c(-c2ccc(CN3CCC(n4c(=O)[nH]c5ccccc54)CC3)cc2)nc1Cc1ccccc1' InChI=1S/C36H33N5O2/c42-35-31(23-25-9-3-1-4-10-25)37-33(34(39-35)27-11-5-2-6-12-27)28-17-15-26(16-18-28)24-40-21-19-29(20-22-40)41-32-14-8-7-13-30(32)38-36(41)43/h1-18,29H,19-24H2,(H,38,43)(H,39,42) UYMMZCJEAFAEMD-UHFFFAOYSA-N
L1W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
L1W benzimidazole F2 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
L1W imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
L1W phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
L1W pyrazine F5 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
L1W Z26794305 F6 fragment 'CC(=O)Nc1ccc2[nH]c(=O)[nH]c2c1' InChI=1S/C9H9N3O2/c1-5(13)10-6-2-3-7-8(4-6)12-9(14)11-7/h2-4H,1H3,(H,10,13)(H2,11,12,14) BTIJJZBDTRBBBF-UHFFFAOYSA-N
L1W Z26794351 F7 fragment 'CCC(=O)Nc1ccc2[nH]c(=O)[nH]c2c1' InChI=1S/C10H11N3O2/c1-2-9(14)11-6-3-4-7-8(5-6)13-10(15)12-7/h3-5H,2H2,1H3,(H,11,14)(H2,12,13,15) VBJWIRGHLZMDOV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
L1W CAA S1 1
L1W CAB S1 1
L1W CAD S1 1
L1W CAE S1 1
L1W CAG S1 1
L1W CAH S1 1
L1W CAI S1 1
L1W CAJ S1 1
L1W CAK S1 1
L1W CAL S1 1
L1W CAM S1 1
L1W CAN S1 1
L1W CAO S1 1
L1W CAP S1 1
L1W CAQ S1 1
L1W CAR S1 1
L1W CAS S1 1
L1W CAU S1 1
L1W CAV S1 1
L1W CAW S1 1
L1W CAX S1 1
L1W CAY S1 1
L1W CBA S1 1
L1W CBC S1 1
L1W CBD S1 1
L1W CBE S1 1
L1W CBF S1 1
L1W CBG S1 1
L1W CBH S1 1
L1W CBP S1 1
L1W CBQ S1 1
L1W CBR S1 1
L1W CBS S1 1
L1W CBT S1 1
L1W CBU S1 1
L1W CBV S1 1
L1W NAC S1 1
L1W NAF S1 1
L1W NAT S1 1
L1W NAZ S1 1
L1W NBB S1 1
L1W OBN S1 1
L1W OBO S1 1
L1W NBI F1 1
L1W CBJ F1 1
L1W OBM F1 1
L1W CBK F1 1
L1W CBC F2 1
L1W NBB F2 1
L1W CBA F2 1
L1W NAZ F2 1
L1W CBD F2 1
L1W CBH F2 1
L1W CBG F2 1
L1W CBF F2 1
L1W CBE F2 1
L1W CBC F3 1
L1W CBD F3 1
L1W NAZ F3 1
L1W CBA F3 1
L1W NBB F3 1
L1W CAG F4 1
L1W CAM F4 1
L1W CAL F4 1
L1W CAK F4 1
L1W CAJ F4 1
L1W CAI F4 1
L1W CAH F4 2
L1W CAR F4 2
L1W CAQ F4 2
L1W CAP F4 2
L1W CAO F4 2
L1W CAN F4 2
L1W CBC F4 3
L1W CBE F4 3
L1W CBF F4 3
L1W CBG F4 3
L1W CBH F4 3
L1W CBD F4 3
L1W CBQ F4 4
L1W CBR F4 4
L1W CBS F4 4
L1W CBT F4 4
L1W CBU F4 4
L1W CBV F4 4
L1W CAA F5 1
L1W CAB F5 1
L1W NAC F5 1
L1W CAD F5 1
L1W CAE F5 1
L1W NAF F5 1
L1W CBK F6 1
L1W CBJ F6 1
L1W OBM F6 1
L1W NBI F6 1
L1W CBG F6 1
L1W CBF F6 1
L1W CBE F6 1
L1W CBC F6 1
L1W NBB F6 1
L1W CBA F6 1
L1W OBN F6 1
L1W NAZ F6 1
L1W CBD F6 1
L1W CBH F6 1
L1W CBL F7 1
L1W CBK F7 1
L1W CBJ F7 1
L1W OBM F7 1
L1W NBI F7 1
L1W CBG F7 1
L1W CBF F7 1
L1W CBE F7 1
L1W CBC F7 1
L1W NBB F7 1
L1W CBA F7 1
L1W OBN F7 1
L1W NAZ F7 1
L1W CBD F7 1
L1W CBH F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id L1W
_pdbe_chem_comp_rdkit_properties.exactmw 654.295
_pdbe_chem_comp_rdkit_properties.amw 654.771
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 49
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 336.301
_pdbe_chem_comp_rdkit_properties.tpsa 136.110
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.833
_pdbe_chem_comp_rdkit_properties.CrippenMR 184.804
_pdbe_chem_comp_rdkit_properties.chi0v 23.816
_pdbe_chem_comp_rdkit_properties.chi1v 13.197
_pdbe_chem_comp_rdkit_properties.chi2v 6.030
_pdbe_chem_comp_rdkit_properties.chi3v 6.030
_pdbe_chem_comp_rdkit_properties.chi4v 4.001
_pdbe_chem_comp_rdkit_properties.chi0n 61.816
_pdbe_chem_comp_rdkit_properties.chi1n 31.947
_pdbe_chem_comp_rdkit_properties.chi2n 6.030
_pdbe_chem_comp_rdkit_properties.chi3n 6.030
_pdbe_chem_comp_rdkit_properties.chi4n 4.001
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.740
_pdbe_chem_comp_rdkit_properties.kappa1 10.146
_pdbe_chem_comp_rdkit_properties.kappa2 13.778
_pdbe_chem_comp_rdkit_properties.kappa3 6.952
_pdbe_chem_comp_rdkit_properties.Phi 2.853
#
_pdbe_chem_comp_external_mappings.comp_id L1W
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 145946057
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
L1W CAA -6.339 -2.432 0.784 ETKDGv3 1
L1W CAB -7.256 -2.631 -0.349 ETKDGv3 2
L1W CAD -5.660 -1.357 -1.761 ETKDGv3 3
L1W CAE -4.840 -1.228 -0.684 ETKDGv3 4
L1W CAG -5.367 -0.725 -3.070 ETKDGv3 5
L1W CAH -3.525 -0.550 -0.745 ETKDGv3 6
L1W CAI -5.413 -1.454 -4.199 ETKDGv3 7
L1W CAJ -5.123 -0.825 -5.505 ETKDGv3 8
L1W CAK -4.828 0.479 -5.571 ETKDGv3 9
L1W CAL -4.798 1.293 -4.340 ETKDGv3 10
L1W CAM -5.060 0.727 -3.155 ETKDGv3 11
L1W CAN -3.185 0.463 0.282 ETKDGv3 12
L1W CAO -1.996 1.075 0.262 ETKDGv3 13
L1W CAP -0.999 0.739 -0.783 ETKDGv3 14
L1W CAQ -1.295 -0.199 -1.699 ETKDGv3 15
L1W CAR -2.607 -0.878 -1.673 ETKDGv3 16
L1W CAS 0.341 1.425 -0.779 ETKDGv3 17
L1W CAU 2.223 1.964 0.709 ETKDGv3 18
L1W CAV 3.381 1.875 -0.297 ETKDGv3 19
L1W CAW 3.917 0.440 -0.369 ETKDGv3 20
L1W CAX 2.787 -0.553 -0.674 ETKDGv3 21
L1W CAY 1.629 -0.382 0.324 ETKDGv3 22
L1W CBA 4.918 0.592 -2.770 ETKDGv3 23
L1W CBC 7.062 0.738 -2.235 ETKDGv3 24
L1W CBD 6.398 0.487 -1.115 ETKDGv3 25
L1W CBE 8.512 0.982 -2.231 ETKDGv3 26
L1W CBF 9.164 0.932 -1.058 ETKDGv3 27
L1W CBG 8.436 0.630 0.213 ETKDGv3 28
L1W CBH 7.097 0.438 0.185 ETKDGv3 29
L1W CBJ 8.870 -0.229 2.565 ETKDGv3 30
L1W CBK 9.584 -0.034 3.868 ETKDGv3 31
L1W CBL 10.909 -0.786 3.874 ETKDGv3 32
L1W CBP -6.683 -2.903 2.168 ETKDGv3 33
L1W CBQ -7.405 -1.817 2.916 ETKDGv3 34
L1W CBR -6.629 -0.738 3.576 ETKDGv3 35
L1W CBS -7.262 0.258 4.209 ETKDGv3 36
L1W CBT -8.741 0.291 4.250 ETKDGv3 37
L1W CBU -9.445 -0.676 3.647 ETKDGv3 38
L1W CBV -8.749 -1.774 2.943 ETKDGv3 39
L1W NAC -6.889 -2.091 -1.618 ETKDGv3 40
L1W NAF -5.238 -1.767 0.591 ETKDGv3 41
L1W NAT 1.133 1.013 0.400 ETKDGv3 42
L1W NAZ 4.996 0.340 -1.362 ETKDGv3 43
L1W NBB 6.195 0.810 -3.357 ETKDGv3 44
L1W NBI 9.170 0.624 1.448 ETKDGv3 45
L1W OBM 8.067 -1.193 2.440 ETKDGv3 46
L1W OBN 3.841 0.667 -3.418 ETKDGv3 47
L1W OBO -8.343 -3.255 -0.212 ETKDGv3 48
L1W OBW -9.406 1.322 4.909 ETKDGv3 49
L1W H2 -5.642 -2.512 -4.165 ETKDGv3 50
L1W H3 -5.149 -1.422 -6.407 ETKDGv3 51
L1W H4 -4.615 0.940 -6.527 ETKDGv3 52
L1W H5 -4.572 2.350 -4.399 ETKDGv3 53
L1W H6 -5.051 1.336 -2.260 ETKDGv3 54
L1W H7 -3.905 0.720 1.050 ETKDGv3 55
L1W H8 -1.761 1.818 1.014 ETKDGv3 56
L1W H9 -0.577 -0.477 -2.460 ETKDGv3 57
L1W H10 -2.810 -1.648 -2.407 ETKDGv3 58
L1W H11 0.142 2.519 -0.744 ETKDGv3 59
L1W H12 0.890 1.241 -1.726 ETKDGv3 60
L1W H13 2.611 1.751 1.730 ETKDGv3 61
L1W H14 1.835 3.005 0.738 ETKDGv3 62
L1W H15 3.036 2.215 -1.297 ETKDGv3 63
L1W H16 4.197 2.557 0.028 ETKDGv3 64
L1W H17 4.321 0.172 0.631 ETKDGv3 65
L1W H18 2.407 -0.428 -1.707 ETKDGv3 66
L1W H19 3.182 -1.589 -0.594 ETKDGv3 67
L1W H20 0.806 -1.077 0.055 ETKDGv3 68
L1W H21 1.976 -0.694 1.334 ETKDGv3 69
L1W H22 9.038 1.202 -3.150 ETKDGv3 70
L1W H23 10.232 1.110 -1.034 ETKDGv3 71
L1W H24 6.539 0.281 1.096 ETKDGv3 72
L1W H25 9.772 1.049 4.032 ETKDGv3 73
L1W H26 8.948 -0.401 4.703 ETKDGv3 74
L1W H27 11.421 -0.630 4.847 ETKDGv3 75
L1W H28 11.569 -0.413 3.061 ETKDGv3 76
L1W H29 10.735 -1.875 3.734 ETKDGv3 77
L1W H30 -7.297 -3.829 2.120 ETKDGv3 78
L1W H31 -5.751 -3.171 2.711 ETKDGv3 79
L1W H32 -5.547 -0.751 3.545 ETKDGv3 80
L1W H33 -6.689 1.042 4.688 ETKDGv3 81
L1W H34 -10.527 -0.658 3.670 ETKDGv3 82
L1W H35 -9.338 -2.537 2.449 ETKDGv3 83
L1W H37 6.423 1.076 -4.340 ETKDGv3 84
L1W H38 10.035 1.208 1.502 ETKDGv3 85
L1W H39 -8.894 2.064 5.371 ETKDGv3 86
L1W H1 -7.539 -2.197 -2.429 ETKDGv3 87
#