data_KYU
#
_chem_comp.id KYU
_chem_comp.name 2-(3-chlorophenyl)-2,2-difluoro-N-(4-methylpyridin-3-yl)acetamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H11 Cl F2 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-08-14
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 296.700
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KYU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7GBQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KYU N1 N1 N 0 1 N N N N N N 8.169 -0.636 20.576 1.897 0.804 -0.017 N1 KYU 1
KYU C4 C1 C 0 1 Y N N N N N 7.793 -0.082 18.223 2.713 -1.416 0.498 C4 KYU 2
KYU C5 C2 C 0 1 Y N N N N N 7.415 0.001 19.561 2.943 -0.124 0.044 C5 KYU 3
KYU C6 C3 C 0 1 N N N N N N 9.334 -0.180 21.081 0.623 0.378 -0.129 C6 KYU 4
KYU C7 C4 C 0 1 N N N N N N 9.898 -0.999 22.264 -0.511 1.368 -0.067 C7 KYU 5
KYU C8 C5 C 0 1 Y N N N N N 11.376 -0.782 22.457 -1.763 0.669 0.396 C8 KYU 6
KYU C10 C6 C 0 1 Y N N N N N 13.207 0.380 23.513 -3.206 -0.044 2.169 C10 KYU 7
KYU C13 C7 C 0 1 Y N N N N N 12.281 -1.421 21.619 -2.615 0.094 -0.529 C13 KYU 8
KYU F F1 F 0 1 N N N N N N 9.654 -2.319 22.037 -0.189 2.390 0.832 F KYU 9
KYU C9 C8 C 0 1 Y N N N N N 11.852 0.101 23.419 -2.057 0.598 1.744 C9 KYU 10
KYU N N2 N 0 1 Y N N N N N 7.155 0.561 17.238 3.696 -2.291 0.561 N KYU 11
KYU C12 C9 C 0 1 Y N N N N N 13.624 -1.127 21.720 -3.765 -0.548 -0.105 C12 KYU 12
KYU C1 C10 C 0 1 Y N N N N N 6.303 0.786 19.903 4.230 0.235 -0.350 C1 KYU 13
KYU C11 C11 C 0 1 Y N N N N N 14.105 -0.223 22.646 -4.061 -0.614 1.245 C11 KYU 14
KYU C C12 C 0 1 N N N N N N 5.858 0.963 21.333 4.525 1.625 -0.849 C KYU 15
KYU C2 C13 C 0 1 Y N N N N N 5.640 1.441 18.870 5.231 -0.719 -0.272 C2 KYU 16
KYU O O1 O 0 1 N N N N N N 9.928 0.812 20.684 0.390 -0.803 -0.280 O KYU 17
KYU C3 C14 C 0 1 Y N N N N N 6.093 1.303 17.574 4.926 -1.982 0.200 C3 KYU 18
KYU F1 F2 F 0 1 N N N N N N 9.194 -0.684 23.389 -0.724 1.914 -1.337 F1 KYU 19
KYU CL CL1 CL 0 0 N N N N N N 14.741 -1.936 20.659 -4.835 -1.270 -1.265 CL KYU 20
KYU H1 H1 H 0 1 N N N N N N 7.810 -1.492 20.948 2.089 1.754 0.025 H1 KYU 21
KYU H2 H2 H 0 1 N N N N N N 8.644 -0.696 17.968 1.719 -1.705 0.806 H2 KYU 22
KYU H3 H3 H 0 1 N N N N N N 13.564 1.069 24.264 -3.434 -0.100 3.223 H3 KYU 23
KYU H4 H4 H 0 1 N N N N N N 11.935 -2.143 20.894 -2.383 0.146 -1.583 H4 KYU 24
KYU H5 H5 H 0 1 N N N N N N 11.160 0.574 24.100 -1.389 1.043 2.466 H5 KYU 25
KYU H6 H6 H 0 1 N N N N N N 15.159 0.009 22.694 -4.958 -1.115 1.577 H6 KYU 26
KYU H7 H7 H 0 1 N N N N N N 5.121 0.187 21.587 4.807 2.260 -0.009 H7 KYU 27
KYU H8 H8 H 0 1 N N N N N N 6.728 0.875 22.001 5.344 1.588 -1.567 H8 KYU 28
KYU H9 H9 H 0 1 N N N N N N 5.401 1.956 21.454 3.637 2.034 -1.332 H9 KYU 29
KYU H10 H10 H 0 1 N N N N N N 4.776 2.054 19.081 6.241 -0.476 -0.570 H10 KYU 30
KYU H11 H11 H 0 1 N N N N N N 5.562 1.821 16.789 5.704 -2.728 0.267 H11 KYU 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KYU N C3 DOUB Y N 1
KYU N C4 SING Y N 2
KYU C3 C2 SING Y N 3
KYU C4 C5 DOUB Y N 4
KYU C2 C1 DOUB Y N 5
KYU C5 C1 SING Y N 6
KYU C5 N1 SING N N 7
KYU C1 C SING N N 8
KYU N1 C6 SING N N 9
KYU CL C12 SING N N 10
KYU O C6 DOUB N N 11
KYU C6 C7 SING N N 12
KYU C13 C12 DOUB Y N 13
KYU C13 C8 SING Y N 14
KYU C12 C11 SING Y N 15
KYU F C7 SING N N 16
KYU C7 C8 SING N N 17
KYU C7 F1 SING N N 18
KYU C8 C9 DOUB Y N 19
KYU C11 C10 DOUB Y N 20
KYU C9 C10 SING Y N 21
KYU N1 H1 SING N N 22
KYU C4 H2 SING N N 23
KYU C10 H3 SING N N 24
KYU C13 H4 SING N N 25
KYU C9 H5 SING N N 26
KYU C11 H6 SING N N 27
KYU C H7 SING N N 28
KYU C H8 SING N N 29
KYU C H9 SING N N 30
KYU C2 H10 SING N N 31
KYU C3 H11 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KYU SMILES ACDLabs 12.01 O=C(Nc1cnccc1C)C(F)(F)c1cccc(Cl)c1
KYU InChI InChI 1.06 InChI=1S/C14H11ClF2N2O/c1-9-5-6-18-8-12(9)19-13(20)14(16,17)10-3-2-4-11(15)7-10/h2-8H,1H3,(H,19,20)
KYU InChIKey InChI 1.06 IIKFZOGWCHXLNB-UHFFFAOYSA-N
KYU SMILES_CANONICAL CACTVS 3.385 Cc1ccncc1NC(=O)C(F)(F)c2cccc(Cl)c2
KYU SMILES CACTVS 3.385 Cc1ccncc1NC(=O)C(F)(F)c2cccc(Cl)c2
KYU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccncc1NC(=O)C(c2cccc(c2)Cl)(F)F
KYU SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccncc1NC(=O)C(c2cccc(c2)Cl)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KYU "SYSTEMATIC NAME" ACDLabs 12.01 2-(3-chlorophenyl)-2,2-difluoro-N-(4-methylpyridin-3-yl)acetamide
KYU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-(3-chlorophenyl)-2,2-bis(fluoranyl)-~{N}-(4-methylpyridin-3-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KYU 'Create component' 2023-08-14 RCSB
KYU 'Initial release' 2023-11-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KYU N1 N 6.897 1.125 1
KYU C4 C 5.598 3.375 2
KYU C5 C 6.897 2.625 3
KYU C6 C 5.598 0.375 4
KYU C7 C 5.598 -1.125 5
KYU C8 C 5.598 -2.625 6
KYU C10 C 6.897 -4.875 7
KYU C13 C 4.299 -3.375 8
KYU F F 7.098 -1.125 9
KYU C9 C 6.897 -3.375 10
KYU N N 5.598 4.875 11
KYU C12 C 4.299 -4.875 12
KYU C1 C 8.196 3.375 13
KYU C11 C 5.598 -5.625 14
KYU C C 9.495 2.625 15
KYU C2 C 8.196 4.875 16
KYU O O 4.299 1.125 17
KYU C3 C 6.897 5.625 18
KYU F1 F 4.098 -1.125 19
KYU CL Cl 3.000 -5.625 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KYU N C3 SINGLE NONE 1
KYU N C4 DOUBLE NONE 2
KYU C3 C2 DOUBLE NONE 3
KYU C4 C5 SINGLE NONE 4
KYU C2 C1 SINGLE NONE 5
KYU C5 C1 DOUBLE NONE 6
KYU C5 N1 SINGLE NONE 7
KYU C1 C SINGLE NONE 8
KYU N1 C6 SINGLE NONE 9
KYU CL C12 SINGLE NONE 10
KYU O C6 DOUBLE NONE 11
KYU C6 C7 SINGLE NONE 12
KYU C13 C12 DOUBLE NONE 13
KYU C13 C8 SINGLE NONE 14
KYU C12 C11 SINGLE NONE 15
KYU F C7 SINGLE NONE 16
KYU C7 C8 SINGLE NONE 17
KYU C7 F1 SINGLE NONE 18
KYU C8 C9 DOUBLE NONE 19
KYU C11 C10 DOUBLE NONE 20
KYU C9 C10 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KYU MurckoScaffold S1 scaffold O=C(Cc1ccccc1)Nc1cccnc1 InChI=1S/C13H12N2O/c16-13(9-11-5-2-1-3-6-11)15-12-7-4-8-14-10-12/h1-8,10H,9H2,(H,15,16) NYGIAKBYRXFSEN-UHFFFAOYSA-N
KYU amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KYU phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KYU pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
KYU Z1129283193 F4 fragment CC(=O)Nc1cnccc1C InChI=1S/C8H10N2O/c1-6-3-4-9-5-8(6)10-7(2)11/h3-5H,1-2H3,(H,10,11) WRPYDRDMRXJIJA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KYU N1 S1 1
KYU C4 S1 1
KYU C5 S1 1
KYU C6 S1 1
KYU C7 S1 1
KYU C8 S1 1
KYU C10 S1 1
KYU C13 S1 1
KYU C9 S1 1
KYU N S1 1
KYU C12 S1 1
KYU C1 S1 1
KYU C11 S1 1
KYU C2 S1 1
KYU O S1 1
KYU C3 S1 1
KYU N1 F1 1
KYU C6 F1 1
KYU O F1 1
KYU C7 F1 1
KYU C8 F2 1
KYU C13 F2 1
KYU C12 F2 1
KYU C11 F2 1
KYU C10 F2 1
KYU C9 F2 1
KYU C4 F3 1
KYU C5 F3 1
KYU C1 F3 1
KYU C2 F3 1
KYU C3 F3 1
KYU N F3 1
KYU C7 F4 1
KYU C6 F4 1
KYU O F4 1
KYU N1 F4 1
KYU C5 F4 1
KYU C4 F4 1
KYU N F4 1
KYU C3 F4 1
KYU C2 F4 1
KYU C1 F4 1
KYU C F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KYU
_pdbe_chem_comp_rdkit_properties.exactmw 296.053
_pdbe_chem_comp_rdkit_properties.amw 296.704
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.661
_pdbe_chem_comp_rdkit_properties.tpsa 41.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.284
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.594
_pdbe_chem_comp_rdkit_properties.chi0v 10.192
_pdbe_chem_comp_rdkit_properties.chi1v 5.293
_pdbe_chem_comp_rdkit_properties.chi2v 2.215
_pdbe_chem_comp_rdkit_properties.chi3v 2.215
_pdbe_chem_comp_rdkit_properties.chi4v 1.259
_pdbe_chem_comp_rdkit_properties.chi0n 20.437
_pdbe_chem_comp_rdkit_properties.chi1n 10.363
_pdbe_chem_comp_rdkit_properties.chi2n 2.026
_pdbe_chem_comp_rdkit_properties.chi3n 2.026
_pdbe_chem_comp_rdkit_properties.chi4n 1.117
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.010
_pdbe_chem_comp_rdkit_properties.kappa1 5.774
_pdbe_chem_comp_rdkit_properties.kappa2 5.545
_pdbe_chem_comp_rdkit_properties.kappa3 2.935
_pdbe_chem_comp_rdkit_properties.Phi 1.601
#
_pdbe_chem_comp_external_mappings.comp_id KYU
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 167807948
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KYU N1 -0.754 0.643 0.072 ETKDGv3 1
KYU C4 -1.266 -0.239 -2.249 ETKDGv3 2
KYU C5 -1.694 0.084 -0.864 ETKDGv3 3
KYU C6 0.230 1.624 -0.292 ETKDGv3 4
KYU C7 1.358 1.942 0.649 ETKDGv3 5
KYU C8 2.303 0.766 0.724 ETKDGv3 6
KYU C10 4.130 -0.601 -0.178 ETKDGv3 7
KYU C13 2.149 -0.255 1.795 ETKDGv3 8
KYU F 2.037 3.070 0.213 ETKDGv3 9
KYU C9 3.241 0.578 -0.225 ETKDGv3 10
KYU N -2.100 -0.780 -3.088 ETKDGv3 11
KYU C12 2.952 -1.328 1.830 ETKDGv3 12
KYU C1 -2.962 -0.210 -0.492 ETKDGv3 13
KYU C11 3.994 -1.505 0.798 ETKDGv3 14
KYU C -3.463 0.066 0.899 ETKDGv3 15
KYU C2 -3.882 -0.826 -1.478 ETKDGv3 16
KYU O 0.154 2.223 -1.399 ETKDGv3 17
KYU C3 -3.452 -1.085 -2.717 ETKDGv3 18
KYU F1 0.838 2.226 1.901 ETKDGv3 19
KYU CL 2.765 -2.530 3.094 ETKDGv3 20
KYU H1 -0.793 0.336 1.069 ETKDGv3 21
KYU H2 -0.249 -0.051 -2.566 ETKDGv3 22
KYU H3 4.888 -0.734 -0.938 ETKDGv3 23
KYU H4 1.381 -0.138 2.550 ETKDGv3 24
KYU H5 3.354 1.283 -1.040 ETKDGv3 25
KYU H6 4.644 -2.370 0.829 ETKDGv3 26
KYU H7 -4.566 -0.052 0.956 ETKDGv3 27
KYU H8 -3.217 1.108 1.197 ETKDGv3 28
KYU H9 -2.997 -0.644 1.613 ETKDGv3 29
KYU H10 -4.901 -1.067 -1.204 ETKDGv3 30
KYU H11 -4.120 -1.533 -3.441 ETKDGv3 31
#