data_KKV
#
_chem_comp.id KKV
_chem_comp.name "4-[2-(4-fluorophenyl)-5-hydroxy-6-oxo-1,6-dihydropyridin-3-yl]benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H12 F N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-02
_chem_comp.pdbx_modified_date 2019-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 325.291
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KKV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NEL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KKV O01 O1 O 0 1 N N N N N N 9.028 20.022 -8.438 5.212 -0.407 -0.015 O01 KKV 1
KKV C02 C1 C 0 1 N N N N N N 9.587 20.844 -9.179 4.004 -0.577 -0.001 C02 KKV 2
KKV C03 C2 C 0 1 N N N N N N 9.993 22.188 -8.812 3.482 -1.886 0.064 C03 KKV 3
KKV O04 O2 O 0 1 N N N N N N 9.707 22.531 -7.543 4.323 -2.954 0.112 O04 KKV 4
KKV C05 C3 C 0 1 N N N N N N 10.592 22.990 -9.713 2.131 -2.077 0.080 C05 KKV 5
KKV C06 C4 C 0 1 N N N N N N 10.869 22.570 -11.059 1.276 -0.957 0.030 C06 KKV 6
KKV C07 C5 C 0 1 Y N N N N N 11.549 23.522 -11.965 -0.192 -1.139 0.047 C07 KKV 7
KKV C08 C6 C 0 1 Y N N N N N 12.836 23.320 -12.454 -0.832 -1.753 -1.033 C08 KKV 8
KKV C09 C7 C 0 1 Y N N N N N 13.454 24.275 -13.266 -2.187 -1.921 -1.019 C09 KKV 9
KKV C10 C8 C 0 1 Y N N N N N 12.828 25.473 -13.614 -2.935 -1.479 0.077 C10 KKV 10
KKV C11 C9 C 0 1 N N N N N N 13.526 26.563 -14.525 -4.398 -1.661 0.094 C11 KKV 11
KKV O12 O3 O 0 1 N N N N N N 12.791 27.391 -15.077 -4.955 -2.194 -0.845 O12 KKV 12
KKV O13 O4 O 0 1 N N N N N N 14.761 26.523 -14.597 -5.118 -1.234 1.150 O13 KKV 13
KKV C14 C10 C 0 1 Y N N N N N 11.549 25.672 -13.101 -2.294 -0.864 1.158 C14 KKV 14
KKV C15 C11 C 0 1 Y N N N N N 10.922 24.729 -12.289 -0.938 -0.701 1.144 C15 KKV 15
KKV C16 C12 C 0 1 N N N N N N 10.500 21.284 -11.454 1.823 0.320 -0.034 C16 KKV 16
KKV C17 C13 C 0 1 Y N N N N N 10.714 20.681 -12.787 0.937 1.497 -0.086 C17 KKV 17
KKV C18 C14 C 0 1 Y N N N N N 10.307 21.320 -13.973 1.155 2.578 0.774 C18 KKV 18
KKV C19 C15 C 0 1 Y N N N N N 10.517 20.722 -15.213 0.324 3.676 0.721 C19 KKV 19
KKV C20 C16 C 0 1 Y N N N N N 11.123 19.471 -15.219 -0.727 3.710 -0.182 C20 KKV 20
KKV F21 F1 F 0 1 N N N N N N 11.329 18.866 -16.418 -1.539 4.789 -0.230 F21 KKV 21
KKV C22 C17 C 0 1 Y N N N N N 11.529 18.797 -14.082 -0.949 2.642 -1.038 C22 KKV 22
KKV C23 C18 C 0 1 Y N N N N N 11.305 19.426 -12.866 -0.120 1.541 -0.998 C23 KKV 23
KKV N24 N1 N 0 1 N N N N N N 9.877 20.465 -10.497 3.180 0.486 -0.043 N24 KKV 24
KKV H041 H1 H 0 0 N N N N N N 9.280 21.803 -7.106 5.261 -2.717 0.096 H041 KKV 25
KKV H051 H2 H 0 0 N N N N N N 10.875 23.988 -9.412 1.721 -3.075 0.129 H051 KKV 26
KKV H081 H3 H 0 0 N N N N N N 13.365 22.412 -12.203 -0.254 -2.094 -1.879 H081 KKV 27
KKV H091 H4 H 0 0 N N N N N N 14.449 24.079 -13.637 -2.682 -2.395 -1.854 H091 KKV 28
KKV H1 H5 H 0 1 N N N N N N 15.070 27.233 -15.148 -6.074 -1.375 1.115 H1 KKV 29
KKV H141 H6 H 0 0 N N N N N N 11.026 26.586 -13.340 -2.871 -0.523 2.005 H141 KKV 30
KKV H151 H7 H 0 0 N N N N N N 9.934 24.934 -11.903 -0.443 -0.227 1.979 H151 KKV 31
KKV H181 H8 H 0 0 N N N N N N 9.826 22.286 -13.921 1.973 2.552 1.479 H181 KKV 32
KKV H191 H9 H 0 0 N N N N N N 10.222 21.209 -16.131 0.491 4.511 1.385 H191 KKV 33
KKV H221 H10 H 0 0 N N N N N N 11.999 17.826 -14.138 -1.769 2.674 -1.739 H221 KKV 34
KKV H231 H11 H 0 0 N N N N N N 11.598 18.926 -11.955 -0.294 0.709 -1.665 H231 KKV 35
KKV H241 H12 H 0 0 N N N N N N 9.621 19.540 -10.778 3.553 1.381 -0.088 H241 KKV 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KKV F21 C20 SING N N 1
KKV C20 C19 DOUB Y N 2
KKV C20 C22 SING Y N 3
KKV C19 C18 SING Y N 4
KKV O12 C11 DOUB N N 5
KKV O13 C11 SING N N 6
KKV C11 C10 SING N N 7
KKV C22 C23 DOUB Y N 8
KKV C18 C17 DOUB Y N 9
KKV C10 C09 DOUB Y N 10
KKV C10 C14 SING Y N 11
KKV C09 C08 SING Y N 12
KKV C14 C15 DOUB Y N 13
KKV C23 C17 SING Y N 14
KKV C17 C16 SING N N 15
KKV C08 C07 DOUB Y N 16
KKV C15 C07 SING Y N 17
KKV C07 C06 SING N N 18
KKV C16 C06 DOUB N N 19
KKV C16 N24 SING N N 20
KKV C06 C05 SING N N 21
KKV N24 C02 SING N N 22
KKV C05 C03 DOUB N N 23
KKV C02 C03 SING N N 24
KKV C02 O01 DOUB N N 25
KKV C03 O04 SING N N 26
KKV O04 H041 SING N N 27
KKV C05 H051 SING N N 28
KKV C08 H081 SING N N 29
KKV C09 H091 SING N N 30
KKV O13 H1 SING N N 31
KKV C14 H141 SING N N 32
KKV C15 H151 SING N N 33
KKV C18 H181 SING N N 34
KKV C19 H191 SING N N 35
KKV C22 H221 SING N N 36
KKV C23 H231 SING N N 37
KKV N24 H241 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KKV SMILES ACDLabs 12.01 O=C2C(O)=CC(c1ccc(cc1)C(=O)O)=C(N2)c3ccc(cc3)F
KKV InChI InChI 1.03 InChI=1S/C18H12FNO4/c19-13-7-5-11(6-8-13)16-14(9-15(21)17(22)20-16)10-1-3-12(4-2-10)18(23)24/h1-9,21H,(H,20,22)(H,23,24)
KKV InChIKey InChI 1.03 ZTIFGKNOJZNMHX-UHFFFAOYSA-N
KKV SMILES_CANONICAL CACTVS 3.385 OC(=O)c1ccc(cc1)C2=C(NC(=O)C(=C2)O)c3ccc(F)cc3
KKV SMILES CACTVS 3.385 OC(=O)c1ccc(cc1)C2=C(NC(=O)C(=C2)O)c3ccc(F)cc3
KKV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(ccc1C2=C(NC(=O)C(=C2)O)c3ccc(cc3)F)C(=O)O
KKV SMILES "OpenEye OEToolkits" 2.0.6 c1cc(ccc1C2=C(NC(=O)C(=C2)O)c3ccc(cc3)F)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KKV "SYSTEMATIC NAME" ACDLabs 12.01 "4-[2-(4-fluorophenyl)-5-hydroxy-6-oxo-1,6-dihydropyridin-3-yl]benzoic acid"
KKV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[2-(4-fluorophenyl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyridin-3-yl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KKV 'Create component' 2019-01-02 RCSB
KKV 'Initial release' 2019-05-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KKV O01 O 13.392 -2.482 1
KKV C02 C 12.093 -1.732 2
KKV C03 C 12.093 -0.233 3
KKV O04 O 13.392 0.517 4
KKV C05 C 10.794 0.517 5
KKV C06 C 9.495 -0.233 6
KKV C07 C 8.196 0.517 7
KKV C08 C 6.897 -0.233 8
KKV C09 C 5.598 0.517 9
KKV C10 C 5.598 2.018 10
KKV C11 C 4.299 2.768 11
KKV O12 O 4.299 4.268 12
KKV O13 O 3.000 2.018 13
KKV C14 C 6.897 2.768 14
KKV C15 C 8.196 2.018 15
KKV C16 C 9.495 -1.732 16
KKV C17 C 8.196 -2.482 17
KKV C18 C 8.196 -3.982 18
KKV C19 C 6.897 -4.732 19
KKV C20 C 5.598 -3.982 20
KKV F21 F 4.299 -4.732 21
KKV C22 C 5.598 -2.482 22
KKV C23 C 6.897 -1.732 23
KKV N24 N 10.794 -2.482 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KKV F21 C20 SINGLE NONE 1
KKV C20 C19 SINGLE NONE 2
KKV C20 C22 DOUBLE NONE 3
KKV C19 C18 DOUBLE NONE 4
KKV O12 C11 DOUBLE NONE 5
KKV O13 C11 SINGLE NONE 6
KKV C11 C10 SINGLE NONE 7
KKV C22 C23 SINGLE NONE 8
KKV C18 C17 SINGLE NONE 9
KKV C10 C09 SINGLE NONE 10
KKV C10 C14 DOUBLE NONE 11
KKV C09 C08 DOUBLE NONE 12
KKV C14 C15 SINGLE NONE 13
KKV C23 C17 DOUBLE NONE 14
KKV C17 C16 SINGLE NONE 15
KKV C08 C07 SINGLE NONE 16
KKV C15 C07 DOUBLE NONE 17
KKV C07 C06 SINGLE NONE 18
KKV C16 C06 DOUBLE NONE 19
KKV C16 N24 SINGLE NONE 20
KKV C06 C05 SINGLE NONE 21
KKV N24 C02 SINGLE NONE 22
KKV C05 C03 DOUBLE NONE 23
KKV C02 C03 SINGLE NONE 24
KKV C02 O01 DOUBLE NONE 25
KKV C03 O04 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KKV MurckoScaffold S1 scaffold 'O=c1ccc(-c2ccccc2)c(-c2ccccc2)[nH]1' InChI=1S/C17H13NO/c19-16-12-11-15(13-7-3-1-4-8-13)17(18-16)14-9-5-2-6-10-14/h1-12H,(H,18,19) WVBGSQQFPOAPFR-UHFFFAOYSA-N
KKV phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KKV pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KKV O01 S1 1
KKV C02 S1 1
KKV C03 S1 1
KKV C05 S1 1
KKV C06 S1 1
KKV C07 S1 1
KKV C08 S1 1
KKV C09 S1 1
KKV C10 S1 1
KKV C14 S1 1
KKV C15 S1 1
KKV C16 S1 1
KKV C17 S1 1
KKV C18 S1 1
KKV C19 S1 1
KKV C20 S1 1
KKV C22 S1 1
KKV C23 S1 1
KKV N24 S1 1
KKV C07 F1 1
KKV C08 F1 1
KKV C09 F1 1
KKV C10 F1 1
KKV C14 F1 1
KKV C15 F1 1
KKV C17 F1 2
KKV C18 F1 2
KKV C19 F1 2
KKV C20 F1 2
KKV C22 F1 2
KKV C23 F1 2
KKV C02 F2 1
KKV C03 F2 1
KKV C05 F2 1
KKV C06 F2 1
KKV C16 F2 1
KKV N24 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KKV
_pdbe_chem_comp_rdkit_properties.exactmw 325.075
_pdbe_chem_comp_rdkit_properties.amw 325.295
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.298
_pdbe_chem_comp_rdkit_properties.tpsa 90.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.875
_pdbe_chem_comp_rdkit_properties.CrippenMR 83.105
_pdbe_chem_comp_rdkit_properties.chi0v 11.458
_pdbe_chem_comp_rdkit_properties.chi1v 6.203
_pdbe_chem_comp_rdkit_properties.chi2v 2.793
_pdbe_chem_comp_rdkit_properties.chi3v 2.793
_pdbe_chem_comp_rdkit_properties.chi4v 1.751
_pdbe_chem_comp_rdkit_properties.chi0n 23.458
_pdbe_chem_comp_rdkit_properties.chi1n 11.966
_pdbe_chem_comp_rdkit_properties.chi2n 2.793
_pdbe_chem_comp_rdkit_properties.chi3n 2.793
_pdbe_chem_comp_rdkit_properties.chi4n 1.751
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.410
_pdbe_chem_comp_rdkit_properties.kappa1 6.604
_pdbe_chem_comp_rdkit_properties.kappa2 6.000
_pdbe_chem_comp_rdkit_properties.kappa3 2.893
_pdbe_chem_comp_rdkit_properties.Phi 1.651
#
_pdbe_chem_comp_external_mappings.comp_id KKV
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 138105966
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KKV O01 -3.294 4.115 -0.949 ETKDGv3 1
KKV C02 -2.343 3.318 -0.734 ETKDGv3 2
KKV C03 -0.947 3.779 -0.770 ETKDGv3 3
KKV O04 -0.634 5.110 -1.041 ETKDGv3 4
KKV C05 0.034 2.902 -0.541 ETKDGv3 5
KKV C06 -0.244 1.469 -0.252 ETKDGv3 6
KKV C07 0.917 0.560 -0.091 ETKDGv3 7
KKV C08 1.045 -0.649 -0.941 ETKDGv3 8
KKV C09 2.086 -1.476 -0.790 ETKDGv3 9
KKV C10 3.134 -1.189 0.223 ETKDGv3 10
KKV C11 4.280 -2.109 0.389 ETKDGv3 11
KKV O12 4.372 -3.143 -0.326 ETKDGv3 12
KKV O13 5.267 -1.845 1.336 ETKDGv3 13
KKV C14 3.024 -0.082 0.981 ETKDGv3 14
KKV C15 1.873 0.830 0.813 ETKDGv3 15
KKV C16 -1.528 1.026 -0.191 ETKDGv3 16
KKV C17 -1.867 -0.373 0.164 ETKDGv3 17
KKV C18 -1.331 -0.989 1.407 ETKDGv3 18
KKV C19 -1.638 -2.253 1.721 ETKDGv3 19
KKV C20 -2.524 -3.040 0.840 ETKDGv3 20
KKV F21 -2.832 -4.321 1.161 ETKDGv3 21
KKV C22 -3.027 -2.486 -0.270 ETKDGv3 22
KKV C23 -2.690 -1.091 -0.621 ETKDGv3 23
KKV N24 -2.608 1.942 -0.447 ETKDGv3 24
KKV H041 -1.354 5.800 -1.220 ETKDGv3 25
KKV H051 1.061 3.243 -0.580 ETKDGv3 26
KKV H081 0.297 -0.866 -1.693 ETKDGv3 27
KKV H091 2.159 -2.354 -1.419 ETKDGv3 28
KKV H1 6.055 -2.471 1.455 ETKDGv3 29
KKV H141 3.769 0.161 1.728 ETKDGv3 30
KKV H151 1.804 1.707 1.445 ETKDGv3 31
KKV H181 -0.694 -0.414 2.068 ETKDGv3 32
KKV H191 -1.244 -2.698 2.625 ETKDGv3 33
KKV H221 -3.680 -3.059 -0.917 ETKDGv3 34
KKV H231 -3.099 -0.665 -1.529 ETKDGv3 35
KKV H241 -3.599 1.615 -0.395 ETKDGv3 36
#