data_KKC
#
_chem_comp.id KKC
_chem_comp.name
"delta-{1-([2,2'-bipyridin]-5-ylmethyl)pyrrolidine-2,5-dione}bis[2-(2,4-difluorophenyl)pyridine)]iridium(III)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C37 H25 F4 Ir N5 O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 3
_chem_comp.pdbx_initial_date 2022-09-23
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 839.837
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KKC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 7YLK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KKC C10 C1 C 0 1 Y N N N N N 4.209 5.229 -0.605 ? ? ? C10 KKC 1
KKC C13 C2 C 0 1 Y N N N N N 1.662 4.140 2.006 ? ? ? C13 KKC 2
KKC C15 C3 C 0 1 Y N N N N N 1.295 2.373 3.655 ? ? ? C15 KKC 3
KKC C17 C4 C 0 1 Y N N N N N 0.101 2.976 3.992 ? ? ? C17 KKC 4
KKC C20 C5 C 0 1 Y N N N N N -1.170 6.175 -1.279 ? ? ? C20 KKC 5
KKC C21 C6 C 0 1 Y N N N N N -1.653 5.610 -2.457 ? ? ? C21 KKC 6
KKC C22 C7 C 0 1 Y N N N N N -1.644 4.240 -2.619 ? ? ? C22 KKC 7
KKC C24 C8 C 0 1 Y N N N N N -0.696 4.071 -0.463 ? ? ? C24 KKC 8
KKC C11 C9 C 0 1 Y N N N N N 3.566 6.357 -1.062 ? ? ? C11 KKC 9
KKC C12 C10 C 0 1 Y N N N N N 2.346 6.691 -0.493 ? ? ? C12 KKC 10
KKC C14 C11 C 0 1 Y N N N N N 2.044 2.975 2.668 ? ? ? C14 KKC 11
KKC C16 C12 C 0 1 Y N N N N N -2.904 7.550 4.302 ? ? ? C16 KKC 12
KKC C18 C13 C 0 1 Y N N N N N -0.347 4.127 3.388 ? ? ? C18 KKC 13
KKC C19 C14 C 0 1 Y N N N N N 0.424 4.733 2.378 ? ? ? C19 KKC 14
KKC C23 C15 C 0 1 Y N N N N N -1.149 3.444 -1.621 ? ? ? C23 KKC 15
KKC C25 C16 C 0 1 Y N N N N N -1.134 7.566 -1.017 ? ? ? C25 KKC 16
KKC C02 C17 C 0 1 N N N N N N 1.464 1.917 -1.927 ? ? ? C02 KKC 17
KKC C03 C18 C 0 1 N N N N N N 2.405 1.188 -2.896 ? ? ? C03 KKC 18
KKC C04 C19 C 0 1 N N N N N N 1.635 1.045 -4.214 ? ? ? C04 KKC 19
KKC C05 C20 C 0 1 Y N N N N N -1.741 7.338 3.556 ? ? ? C05 KKC 20
KKC C06 C21 C 0 1 Y N N N N N 1.921 7.823 3.242 ? ? ? C06 KKC 21
KKC C07 C22 C 0 1 Y N N N N N 0.620 7.438 2.960 ? ? ? C07 KKC 22
KKC C08 C23 C 0 1 Y N N N N N 2.408 4.829 0.944 ? ? ? C08 KKC 23
KKC C09 C24 C 0 1 Y N N N N N 3.643 4.464 0.390 ? ? ? C09 KKC 24
KKC C26 C25 C 0 1 Y N N N N N -1.591 8.522 -1.938 ? ? ? C26 KKC 25
KKC C27 C26 C 0 1 Y N N N N N -4.117 7.078 3.857 ? ? ? C27 KKC 26
KKC C28 C27 C 0 1 Y N N N N N -1.517 9.848 -1.603 ? ? ? C28 KKC 27
KKC C29 C28 C 0 1 Y N N N N N -1.000 10.219 -0.374 ? ? ? C29 KKC 28
KKC C30 C29 C 0 1 Y N N N N N -0.583 9.244 0.464 ? ? ? C30 KKC 29
KKC C31 C30 C 0 1 Y N N N N N -4.164 6.390 2.648 ? ? ? C31 KKC 30
KKC C32 C31 C 0 1 Y N N N N N -2.996 6.204 1.953 ? ? ? C32 KKC 31
KKC C33 C32 C 0 1 Y N N N N N -0.389 7.779 3.904 ? ? ? C33 KKC 32
KKC C34 C33 C 0 1 Y N N N N N -0.046 8.486 5.055 ? ? ? C34 KKC 33
KKC C35 C34 C 0 1 Y N N N N N 1.250 8.874 5.332 ? ? ? C35 KKC 34
KKC C36 C35 C 0 1 Y N N N N N 2.182 8.517 4.400 ? ? ? C36 KKC 35
KKC C37 C36 C 0 1 N N N N N N 0.151 0.968 -3.828 ? ? ? C37 KKC 36
KKC C41 C37 C 0 1 N N N N N N -1.143 1.909 -1.783 ? ? ? C41 KKC 37
KKC F01 F1 F 0 1 N N N N N N 3.209 2.362 2.371 ? ? ? F01 KKC 38
KKC F02 F2 F 0 1 N N N N N N -0.643 2.383 4.964 ? ? ? F02 KKC 39
KKC F03 F3 F 0 1 N N N N N N -0.987 8.833 5.964 ? ? ? F03 KKC 40
KKC F04 F4 F 0 1 N N N N N N 3.456 8.866 4.627 ? ? ? F04 KKC 41
KKC N01 N1 N 0 1 N N N N N N 0.142 1.363 -2.377 ? ? ? N01 KKC 42
KKC N37 N2 N 0 1 Y N N N N N -1.791 6.660 2.363 ? ? ? N37 KKC 43
KKC N38 N3 N 0 1 Y N N N N N 1.789 5.947 0.483 ? ? ? N38 KKC 44
KKC N39 N4 N 0 1 Y N N N N N -0.710 5.415 -0.293 ? ? ? N39 KKC 45
KKC N40 N5 N 0 1 Y N N N N N -0.634 7.926 0.139 ? ? ? N40 KKC 46
KKC O01 O1 O 0 1 N N N N N N -0.908 0.356 -4.567 ? ? ? O01 KKC 47
KKC O02 O2 O 0 1 N N N N N N 1.791 2.323 -0.604 ? ? ? O02 KKC 48
KKC IR2 IR1 IR 3 0 N N N N N N -0.014 6.402 1.362 ? ? ? IR2 KKC 49
KKC H1 H1 H 0 1 N N N N N N 5.161 4.943 -1.028 ? ? ? H1 KKC 50
KKC H2 H2 H 0 1 N N N N N N 1.628 1.469 4.143 ? ? ? H2 KKC 51
KKC H3 H3 H 0 1 N N N N N N -2.034 6.244 -3.243 ? ? ? H3 KKC 52
KKC H4 H4 H 0 1 N N N N N N -2.025 3.798 -3.528 ? ? ? H4 KKC 53
KKC H5 H5 H 0 1 N N N N N N -0.315 3.456 0.339 ? ? ? H5 KKC 54
KKC H6 H6 H 0 1 N N N N N N 4.000 6.965 -1.842 ? ? ? H6 KKC 55
KKC H7 H7 H 0 1 N N N N N N 1.828 7.572 -0.842 ? ? ? H7 KKC 56
KKC H8 H8 H 0 1 N N N N N N -2.850 8.089 5.236 ? ? ? H8 KKC 57
KKC H9 H9 H 0 1 N N N N N N -1.288 4.565 3.688 ? ? ? H9 KKC 58
KKC H10 H10 H 0 1 N N N N N N 2.668 0.197 -2.499 ? ? ? H10 KKC 59
KKC H11 H11 H 0 1 N N N N N N 3.322 1.776 -3.052 ? ? ? H11 KKC 60
KKC H12 H12 H 0 1 N N N N N N 1.942 0.128 -4.739 ? ? ? H12 KKC 61
KKC H13 H13 H 0 1 N N N N N N 1.818 1.916 -4.860 ? ? ? H13 KKC 62
KKC H14 H14 H 0 1 N N N N N N 2.722 7.580 2.559 ? ? ? H14 KKC 63
KKC H15 H15 H 0 1 N N N N N N 4.152 3.580 0.745 ? ? ? H15 KKC 64
KKC H16 H16 H 0 1 N N N N N N -1.993 8.218 -2.893 ? ? ? H16 KKC 65
KKC H17 H17 H 0 1 N N N N N N -5.015 7.238 4.435 ? ? ? H17 KKC 66
KKC H18 H18 H 0 1 N N N N N N -1.861 10.602 -2.296 ? ? ? H18 KKC 67
KKC H19 H19 H 0 1 N N N N N N -0.932 11.259 -0.092 ? ? ? H19 KKC 68
KKC H20 H20 H 0 1 N N N N N N -0.193 9.524 1.431 ? ? ? H20 KKC 69
KKC H21 H21 H 0 1 N N N N N N -5.100 6.011 2.265 ? ? ? H21 KKC 70
KKC H22 H22 H 0 1 N N N N N N -3.042 5.660 1.021 ? ? ? H22 KKC 71
KKC H23 H23 H 0 1 N N N N N N 1.509 9.423 6.225 ? ? ? H23 KKC 72
KKC H24 H24 H 0 1 N N N N N N -1.978 1.626 -2.441 ? ? ? H24 KKC 73
KKC H25 H25 H 0 1 N N N N N N -1.288 1.455 -0.792 ? ? ? H25 KKC 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KKC O01 C37 DOUB N N 1
KKC C04 C37 SING N N 2
KKC C04 C03 SING N N 3
KKC C37 N01 SING N N 4
KKC C03 C02 SING N N 5
KKC C22 C21 DOUB Y N 6
KKC C22 C23 SING Y N 7
KKC C21 C20 SING Y N 8
KKC N01 C02 SING N N 9
KKC N01 C41 SING N N 10
KKC C26 C28 DOUB Y N 11
KKC C26 C25 SING Y N 12
KKC C02 O02 DOUB N N 13
KKC C41 C23 SING N N 14
KKC C23 C24 DOUB Y N 15
KKC C28 C29 SING Y N 16
KKC C20 C25 SING N N 17
KKC C20 N39 DOUB Y N 18
KKC C11 C10 DOUB Y N 19
KKC C11 C12 SING Y N 20
KKC C25 N40 DOUB Y N 21
KKC C10 C09 SING Y N 22
KKC C12 N38 DOUB Y N 23
KKC C24 N39 SING Y N 24
KKC C29 C30 DOUB Y N 25
KKC N39 IR2 SING N N 26
KKC N40 C30 SING Y N 27
KKC N40 IR2 SING N N 28
KKC C09 C08 DOUB Y N 29
KKC N38 C08 SING Y N 30
KKC N38 IR2 SING N N 31
KKC C08 C13 SING N N 32
KKC IR2 N37 SING N N 33
KKC IR2 C19 SING N N 34
KKC IR2 C07 SING N N 35
KKC C32 N37 DOUB Y N 36
KKC C32 C31 SING Y N 37
KKC C13 C19 DOUB Y N 38
KKC C13 C14 SING Y N 39
KKC N37 C05 SING Y N 40
KKC F01 C14 SING N N 41
KKC C19 C18 SING Y N 42
KKC C31 C27 DOUB Y N 43
KKC C14 C15 DOUB Y N 44
KKC C07 C06 DOUB Y N 45
KKC C07 C33 SING Y N 46
KKC C06 C36 SING Y N 47
KKC C18 C17 DOUB Y N 48
KKC C05 C33 SING N N 49
KKC C05 C16 DOUB Y N 50
KKC C15 C17 SING Y N 51
KKC C27 C16 SING Y N 52
KKC C33 C34 DOUB Y N 53
KKC C17 F02 SING N N 54
KKC C36 F04 SING N N 55
KKC C36 C35 DOUB Y N 56
KKC C34 C35 SING Y N 57
KKC C34 F03 SING N N 58
KKC C10 H1 SING N N 59
KKC C15 H2 SING N N 60
KKC C21 H3 SING N N 61
KKC C22 H4 SING N N 62
KKC C24 H5 SING N N 63
KKC C11 H6 SING N N 64
KKC C12 H7 SING N N 65
KKC C16 H8 SING N N 66
KKC C18 H9 SING N N 67
KKC C03 H10 SING N N 68
KKC C03 H11 SING N N 69
KKC C04 H12 SING N N 70
KKC C04 H13 SING N N 71
KKC C06 H14 SING N N 72
KKC C09 H15 SING N N 73
KKC C26 H16 SING N N 74
KKC C27 H17 SING N N 75
KKC C28 H18 SING N N 76
KKC C29 H19 SING N N 77
KKC C30 H20 SING N N 78
KKC C31 H21 SING N N 79
KKC C32 H22 SING N N 80
KKC C35 H23 SING N N 81
KKC C41 H24 SING N N 82
KKC C41 H25 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KKC InChI InChI 1.06 'InChI=1S/C15H13N3O2.2C11H6F2N.Ir/c19-14-6-7-15(20)18(14)10-11-4-5-13(17-9-11)12-3-1-2-8-16-12;2*12-8-4-5-9(10(13)7-8)11-3-1-2-6-14-11;/h1-5,8-9H,6-7,10H2;2*1-4,6-7H;/q;;;+3'
KKC InChIKey InChI 1.06 QUFXSILAYVLQGU-UHFFFAOYSA-N
KKC SMILES_CANONICAL CACTVS 3.385 'Fc1cc(F)c(c([Ir+3]c2cc(F)cc(F)c2c3ccccn3)c1)c4ccccn4.O=C5CCC(=O)N5Cc6ccc(nc6)c7ccccn7'
KKC SMILES CACTVS 3.385 'Fc1cc(F)c(c([Ir+3]c2cc(F)cc(F)c2c3ccccn3)c1)c4ccccn4.O=C5CCC(=O)N5Cc6ccc(nc6)c7ccccn7'
KKC SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1c(cc2c(c1F)C3=CC=CC=[N]3[Ir+3]245(c6cc(cc(c6C7=CC=CC=[N]47)F)F)[N]8=C(C=CC=C8)C9=[N]5C=C(C=C9)CN1C(=O)CCC1=O)F'
KKC SMILES 'OpenEye OEToolkits' 2.0.7 'c1c(cc2c(c1F)C3=CC=CC=[N]3[Ir+3]245(c6cc(cc(c6C7=CC=CC=[N]47)F)F)[N]8=C(C=CC=C8)C9=[N]5C=C(C=C9)CN1C(=O)CCC1=O)F'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KKC 'Create component' 2022-09-23 PDBJ
KKC 'Initial release' 2023-03-15 RCSB
KKC 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id KKC
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C04
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KKC C10 C 15.615 -0.289 1
KKC C13 C 12.617 -2.886 2
KKC C15 C 12.617 -5.482 3
KKC C17 C 11.118 -5.482 4
KKC C20 C 5.588 -1.554 5
KKC C21 C 4.090 -1.554 6
KKC C22 C 3.340 -0.256 7
KKC C24 C 5.588 1.042 8
KKC C11 C 14.866 1.009 9
KKC C12 C 13.367 1.009 10
KKC C14 C 13.367 -4.184 11
KKC C16 C 8.013 4.184 12
KKC C18 C 10.368 -4.184 13
KKC C19 C 11.118 -2.886 14
KKC C23 C 4.090 1.042 15
KKC C25 C 6.338 -2.853 16
KKC C02 C 0.958 3.554 17
KKC C03 C -0.468 3.090 18
KKC C04 C -0.468 1.590 19
KKC C05 C 8.763 2.886 20
KKC C06 C 12.510 1.588 21
KKC C07 C 11.011 1.588 22
KKC C08 C 13.367 -1.588 23
KKC C09 C 14.866 -1.588 24
KKC C26 C 5.588 -4.151 25
KKC C27 C 6.514 4.184 26
KKC C28 C 6.338 -5.449 27
KKC C29 C 7.837 -5.449 28
KKC C30 C 8.586 -4.151 29
KKC C31 C 5.765 2.886 30
KKC C32 C 6.514 1.588 31
KKC C33 C 10.262 2.886 32
KKC C34 C 11.011 4.184 33
KKC C35 C 12.510 4.184 34
KKC C36 C 13.260 2.886 35
KKC C37 C 0.958 1.127 36
KKC C41 C 3.340 2.340 37
KKC F01 F 14.866 -4.184 38
KKC F02 F 10.369 -6.780 39
KKC F03 F 10.262 5.482 40
KKC F04 F 14.759 2.886 41
KKC N01 N 1.840 2.340 42
KKC N37 N 8.013 1.588 43
KKC N38 N 12.617 -0.289 44
KKC N39 N 6.338 -0.256 45
KKC N40 N 7.837 -2.853 46
KKC O01 O 1.422 -0.300 47
KKC O02 O 1.422 4.980 48
KKC IR2 Ir 9.446 -0.513 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KKC O01 C37 DOUBLE NONE 1
KKC C04 C37 SINGLE NONE 2
KKC C04 C03 SINGLE NONE 3
KKC C37 N01 SINGLE NONE 4
KKC C03 C02 SINGLE NONE 5
KKC C22 C21 DOUBLE NONE 6
KKC C22 C23 SINGLE NONE 7
KKC C21 C20 SINGLE NONE 8
KKC N01 C02 SINGLE NONE 9
KKC N01 C41 SINGLE NONE 10
KKC C26 C28 DOUBLE NONE 11
KKC C26 C25 SINGLE NONE 12
KKC C02 O02 DOUBLE NONE 13
KKC C41 C23 SINGLE NONE 14
KKC C23 C24 DOUBLE NONE 15
KKC C28 C29 SINGLE NONE 16
KKC C20 C25 SINGLE NONE 17
KKC C20 N39 DOUBLE NONE 18
KKC C11 C10 DOUBLE NONE 19
KKC C11 C12 SINGLE NONE 20
KKC C25 N40 DOUBLE NONE 21
KKC C10 C09 SINGLE NONE 22
KKC C12 N38 DOUBLE NONE 23
KKC C24 N39 SINGLE NONE 24
KKC C29 C30 DOUBLE NONE 25
KKC N39 IR2 DATIVE NONE 26
KKC N40 C30 SINGLE NONE 27
KKC N40 IR2 DATIVE NONE 28
KKC C09 C08 DOUBLE NONE 29
KKC N38 C08 SINGLE NONE 30
KKC N38 IR2 DATIVE NONE 31
KKC C08 C13 SINGLE NONE 32
KKC N37 IR2 DATIVE NONE 33
KKC IR2 C19 SINGLE NONE 34
KKC IR2 C07 SINGLE NONE 35
KKC C32 N37 DOUBLE NONE 36
KKC C32 C31 SINGLE NONE 37
KKC C13 C19 DOUBLE NONE 38
KKC C13 C14 SINGLE NONE 39
KKC N37 C05 SINGLE NONE 40
KKC F01 C14 SINGLE NONE 41
KKC C19 C18 SINGLE NONE 42
KKC C31 C27 DOUBLE NONE 43
KKC C14 C15 DOUBLE NONE 44
KKC C07 C06 DOUBLE NONE 45
KKC C07 C33 SINGLE NONE 46
KKC C06 C36 SINGLE NONE 47
KKC C18 C17 DOUBLE NONE 48
KKC C05 C33 SINGLE NONE 49
KKC C05 C16 DOUBLE NONE 50
KKC C15 C17 SINGLE NONE 51
KKC C27 C16 SINGLE NONE 52
KKC C33 C34 DOUBLE NONE 53
KKC C17 F02 SINGLE NONE 54
KKC C36 F04 SINGLE NONE 55
KKC C36 C35 DOUBLE NONE 56
KKC C34 C35 SINGLE NONE 57
KKC C34 F03 SINGLE NONE 58
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KKC MurckoScaffold S1 scaffold 'O=C1CCC(=O)N1Cc1ccc2-c3cccc[n]3->[Ir@OH13+3]34([c]5ccccc5-c5cccc[n]->35)([c]3ccccc3-c3cccc[n]->43)<-[n]2c1' ? ?
KKC amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KKC phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KKC pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
KKC succinimide F4 fragment O=C1CCC(=O)N1 InChI=1S/C4H5NO2/c6-3-1-2-4(7)5-3/h1-2H2,(H,5,6,7) KZNICNPSHKQLFF-UHFFFAOYSA-N
KKC Z57160161 F5 fragment c1ccc(-c2ccccn2)nc1 InChI=1S/C10H8N2/c1-3-7-11-9(5-1)10-6-2-4-8-12-10/h1-8H ROFVEXUMMXZLPA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KKC C10 S1 1
KKC C13 S1 1
KKC C15 S1 1
KKC C17 S1 1
KKC C20 S1 1
KKC C21 S1 1
KKC C22 S1 1
KKC C24 S1 1
KKC C11 S1 1
KKC C12 S1 1
KKC C14 S1 1
KKC C16 S1 1
KKC C18 S1 1
KKC C19 S1 1
KKC C23 S1 1
KKC C25 S1 1
KKC C02 S1 1
KKC C03 S1 1
KKC C04 S1 1
KKC C05 S1 1
KKC C06 S1 1
KKC C07 S1 1
KKC C08 S1 1
KKC C09 S1 1
KKC C26 S1 1
KKC C27 S1 1
KKC C28 S1 1
KKC C29 S1 1
KKC C30 S1 1
KKC C31 S1 1
KKC C32 S1 1
KKC C33 S1 1
KKC C34 S1 1
KKC C35 S1 1
KKC C36 S1 1
KKC C37 S1 1
KKC C41 S1 1
KKC N01 S1 1
KKC N37 S1 1
KKC N38 S1 1
KKC N39 S1 1
KKC N40 S1 1
KKC O01 S1 1
KKC O02 S1 1
KKC IR2 S1 1
KKC N01 F1 1
KKC C37 F1 1
KKC O01 F1 1
KKC C04 F1 1
KKC N01 F1 2
KKC C02 F1 2
KKC O02 F1 2
KKC C03 F1 2
KKC C13 F2 1
KKC C19 F2 1
KKC C18 F2 1
KKC C17 F2 1
KKC C15 F2 1
KKC C14 F2 1
KKC C06 F2 2
KKC C07 F2 2
KKC C33 F2 2
KKC C34 F2 2
KKC C35 F2 2
KKC C36 F2 2
KKC C20 F3 1
KKC C21 F3 1
KKC C22 F3 1
KKC C23 F3 1
KKC C24 F3 1
KKC N39 F3 1
KKC C12 F3 2
KKC C11 F3 2
KKC C10 F3 2
KKC C09 F3 2
KKC C08 F3 2
KKC N38 F3 2
KKC C25 F3 3
KKC C26 F3 3
KKC C28 F3 3
KKC C29 F3 3
KKC C30 F3 3
KKC N40 F3 3
KKC C05 F3 4
KKC C16 F3 4
KKC C27 F3 4
KKC C31 F3 4
KKC C32 F3 4
KKC N37 F3 4
KKC C03 F4 1
KKC C02 F4 1
KKC O02 F4 1
KKC N01 F4 1
KKC C37 F4 1
KKC O01 F4 1
KKC C04 F4 1
KKC C23 F5 1
KKC C22 F5 1
KKC C21 F5 1
KKC C20 F5 1
KKC N39 F5 1
KKC C24 F5 1
KKC C25 F5 1
KKC C26 F5 1
KKC C28 F5 1
KKC C29 F5 1
KKC C30 F5 1
KKC N40 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KKC
_pdbe_chem_comp_rdkit_properties.exactmw 840.156
_pdbe_chem_comp_rdkit_properties.amw 839.849
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 49
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.081
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 310.547
_pdbe_chem_comp_rdkit_properties.tpsa 60.980
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.998
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.473
_pdbe_chem_comp_rdkit_properties.chi0v 25.793
_pdbe_chem_comp_rdkit_properties.chi1v 19.983
_pdbe_chem_comp_rdkit_properties.chi2v 28.444
_pdbe_chem_comp_rdkit_properties.chi3v 28.444
_pdbe_chem_comp_rdkit_properties.chi4v 29.567
_pdbe_chem_comp_rdkit_properties.chi0n 48.398
_pdbe_chem_comp_rdkit_properties.chi1n 25.803
_pdbe_chem_comp_rdkit_properties.chi2n 7.919
_pdbe_chem_comp_rdkit_properties.chi3n 7.919
_pdbe_chem_comp_rdkit_properties.chi4n 6.307
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.451
_pdbe_chem_comp_rdkit_properties.kappa1 13.110
_pdbe_chem_comp_rdkit_properties.kappa2 8.764
_pdbe_chem_comp_rdkit_properties.kappa3 2.681
_pdbe_chem_comp_rdkit_properties.Phi 2.345
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KKC C10 0.757 0.546 -3.126 ETKDGv3 1
KKC C13 0.736 -2.731 -1.117 ETKDGv3 2
KKC C15 2.325 -4.314 -0.110 ETKDGv3 3
KKC C17 1.177 -5.067 0.432 ETKDGv3 4
KKC C20 -1.065 2.471 0.037 ETKDGv3 5
KKC C21 -0.192 3.672 0.091 ETKDGv3 6
KKC C22 1.119 3.523 0.301 ETKDGv3 7
KKC C24 0.878 1.110 0.403 ETKDGv3 8
KKC C11 -0.556 0.765 -3.234 ETKDGv3 9
KKC C12 -1.495 -0.205 -2.647 ETKDGv3 10
KKC C14 2.130 -3.210 -0.846 ETKDGv3 11
KKC C16 -0.231 0.044 3.389 ETKDGv3 12
KKC C18 -0.068 -4.654 0.179 ETKDGv3 13
KKC C19 -0.291 -3.440 -0.629 ETKDGv3 14
KKC C23 1.694 2.171 0.473 ETKDGv3 15
KKC C25 -2.519 2.541 -0.188 ETKDGv3 16
KKC C02 3.922 2.057 -1.768 ETKDGv3 17
KKC C03 4.799 1.307 -2.714 ETKDGv3 18
KKC C04 5.293 0.103 -1.885 ETKDGv3 19
KKC C05 -0.592 -1.036 2.669 ETKDGv3 20
KKC C06 -3.332 -2.235 0.401 ETKDGv3 21
KKC C07 -2.119 -1.953 0.886 ETKDGv3 22
KKC C08 0.367 -1.520 -1.882 ETKDGv3 23
KKC C09 1.250 -0.653 -2.419 ETKDGv3 24
KKC C26 -3.244 3.820 -0.414 ETKDGv3 25
KKC C27 1.174 0.199 3.812 ETKDGv3 26
KKC C28 -4.565 3.797 -0.625 ETKDGv3 27
KKC C29 -5.286 2.512 -0.634 ETKDGv3 28
KKC C30 -4.607 1.381 -0.426 ETKDGv3 29
KKC C31 2.078 -0.724 3.471 ETKDGv3 30
KKC C32 1.653 -1.883 2.665 ETKDGv3 31
KKC C33 -1.967 -1.245 2.175 ETKDGv3 32
KKC C34 -3.073 -0.898 2.870 ETKDGv3 33
KKC C35 -4.414 -1.204 2.326 ETKDGv3 34
KKC C36 -4.538 -1.846 1.158 ETKDGv3 35
KKC C37 4.616 0.273 -0.565 ETKDGv3 36
KKC C41 3.170 1.990 0.689 ETKDGv3 37
KKC F01 3.219 -2.580 -1.340 ETKDGv3 38
KKC F02 1.388 -6.177 1.180 ETKDGv3 39
KKC F03 -2.991 -0.337 4.103 ETKDGv3 40
KKC F04 -5.767 -2.136 0.666 ETKDGv3 41
KKC N01 3.792 1.424 -0.507 ETKDGv3 42
KKC N37 0.411 -1.997 2.292 ETKDGv3 43
KKC N38 -1.042 -1.255 -2.025 ETKDGv3 44
KKC N39 -0.531 1.293 0.191 ETKDGv3 45
KKC N40 -3.188 1.423 -0.195 ETKDGv3 46
KKC O01 4.763 -0.518 0.404 ETKDGv3 47
KKC O02 3.361 3.149 -2.052 ETKDGv3 48
KKC IR2 -9.755 -2.995 -0.811 ETKDGv3 49
KKC H1 1.461 1.250 -3.548 ETKDGv3 50
KKC H2 3.330 -4.664 0.087 ETKDGv3 51
KKC H3 -0.587 4.670 -0.031 ETKDGv3 52
KKC H4 1.759 4.396 0.340 ETKDGv3 53
KKC H5 1.272 0.108 0.505 ETKDGv3 54
KKC H6 -0.927 1.645 -3.744 ETKDGv3 55
KKC H7 -2.562 -0.044 -2.725 ETKDGv3 56
KKC H8 -0.936 0.829 3.630 ETKDGv3 57
KKC H9 -0.917 -5.200 0.569 ETKDGv3 58
KKC H10 5.650 1.943 -3.038 ETKDGv3 59
KKC H11 4.210 0.969 -3.593 ETKDGv3 60
KKC H12 6.395 0.137 -1.755 ETKDGv3 61
KKC H13 4.990 -0.855 -2.357 ETKDGv3 62
KKC H14 -3.427 -2.748 -0.546 ETKDGv3 63
KKC H15 2.314 -0.776 -2.340 ETKDGv3 64
KKC H16 -2.736 4.772 -0.417 ETKDGv3 65
KKC H17 1.472 1.064 4.390 ETKDGv3 66
KKC H18 -5.106 4.719 -0.793 ETKDGv3 67
KKC H19 -6.353 2.487 -0.811 ETKDGv3 68
KKC H20 -5.122 0.430 -0.440 ETKDGv3 69
KKC H21 3.113 -0.617 3.770 ETKDGv3 70
KKC H22 2.376 -2.632 2.371 ETKDGv3 71
KKC H23 -5.297 -0.920 2.884 ETKDGv3 72
KKC H24 3.331 1.320 1.561 ETKDGv3 73
KKC H25 3.655 2.961 0.928 ETKDGv3 74
#