data_K8Y
#
_chem_comp.id K8Y
_chem_comp.name "4-[(3-carboxypropanoyl)amino]benzene-1,2-dicarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H11 N O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-09
_chem_comp.pdbx_modified_date 2019-06-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 281.218
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K8Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6N17
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K8Y C10 C1 C 0 1 Y N N N N N 5.993 -15.597 -33.704 -1.094 -2.213 0.091 C10 K8Y 1
K8Y C13 C2 C 0 1 N N N N N N 6.908 -12.069 -34.665 -4.394 -0.435 0.272 C13 K8Y 2
K8Y C17 C3 C 0 1 N N N N N N 9.549 -13.494 -34.881 -2.596 1.757 -0.301 C17 K8Y 3
K8Y C20 C4 C 0 1 Y N N N N N 8.349 -15.579 -34.172 -0.713 0.133 -0.319 C20 K8Y 4
K8Y C02 C5 C 0 1 N N N N N N 8.092 -21.062 -35.736 5.771 0.266 0.049 C02 K8Y 5
K8Y C04 C6 C 0 1 N N N N N N 8.683 -21.120 -34.329 4.305 0.481 0.321 C04 K8Y 6
K8Y C05 C7 C 0 1 N N N N N N 8.006 -20.108 -33.410 3.505 -0.704 -0.223 C05 K8Y 7
K8Y C06 C8 C 0 1 N N N N N N 8.160 -18.673 -33.918 2.039 -0.489 0.049 C06 K8Y 8
K8Y C09 C9 C 0 1 Y N N N N N 7.198 -16.270 -33.800 -0.226 -1.163 -0.191 C09 K8Y 9
K8Y C11 C10 C 0 1 Y N N N N N 5.923 -14.247 -33.993 -2.445 -1.980 0.240 C11 K8Y 10
K8Y C12 C11 C 0 1 Y N N N N N 7.057 -13.562 -34.374 -2.948 -0.686 0.114 C12 K8Y 11
K8Y C16 C12 C 0 1 Y N N N N N 8.273 -14.226 -34.465 -2.072 0.381 -0.166 C16 K8Y 12
K8Y N08 N1 N 0 1 N N N N N N 7.211 -17.685 -33.450 1.138 -1.411 -0.344 N08 K8Y 13
K8Y O01 O1 O 0 1 N N N N N N 6.916 -20.636 -35.904 6.668 1.184 0.441 O01 K8Y 14
K8Y O03 O2 O 0 1 N N N N N N 8.782 -21.430 -36.725 6.139 -0.734 -0.521 O03 K8Y 15
K8Y O07 O3 O 0 1 N N N N N N 9.018 -18.401 -34.690 1.669 0.514 0.622 O07 K8Y 16
K8Y O14 O4 O 0 1 N N N N N N 7.670 -11.237 -34.127 -5.283 -1.128 -0.467 O14 K8Y 17
K8Y O15 O5 O 0 1 N N N N N N 5.987 -11.665 -35.413 -4.783 0.396 1.069 O15 K8Y 18
K8Y O18 O6 O 0 1 N N N N N N 10.590 -13.627 -34.187 -1.745 2.791 -0.447 O18 K8Y 19
K8Y O19 O7 O 0 1 N N N N N N 9.565 -12.756 -35.902 -3.794 1.956 -0.282 O19 K8Y 20
K8Y H1 H1 H 0 1 N N N N N N 5.103 -16.129 -33.402 -0.708 -3.217 0.188 H1 K8Y 21
K8Y H2 H2 H 0 1 N N N N N N 9.296 -16.095 -34.232 -0.036 0.946 -0.537 H2 K8Y 22
K8Y H3 H3 H 0 1 N N N N N N 8.539 -22.131 -33.920 4.143 0.566 1.396 H3 K8Y 23
K8Y H4 H4 H 0 1 N N N N N N 9.759 -20.896 -34.381 3.975 1.397 -0.169 H4 K8Y 24
K8Y H5 H5 H 0 1 N N N N N N 6.934 -20.348 -33.347 3.667 -0.789 -1.298 H5 K8Y 25
K8Y H6 H6 H 0 1 N N N N N N 8.458 -20.180 -32.410 3.835 -1.620 0.267 H6 K8Y 26
K8Y H7 H7 H 0 1 N N N N N N 4.979 -13.728 -33.920 -3.114 -2.800 0.454 H7 K8Y 27
K8Y H8 H8 H 0 1 N N N N N N 6.496 -18.004 -32.827 1.438 -2.247 -0.734 H8 K8Y 28
K8Y H9 H9 H 0 1 N N N N N N 6.701 -20.655 -36.829 7.597 1.002 0.244 H9 K8Y 29
K8Y H10 H10 H 0 1 N N N N N N 7.415 -10.359 -34.387 -6.219 -0.928 -0.328 H10 K8Y 30
K8Y H11 H11 H 0 1 N N N N N N 11.291 -13.110 -34.565 -2.134 3.672 -0.531 H11 K8Y 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K8Y O03 C02 DOUB N N 1
K8Y O01 C02 SING N N 2
K8Y O19 C17 DOUB N N 3
K8Y C02 C04 SING N N 4
K8Y O15 C13 DOUB N N 5
K8Y C17 C16 SING N N 6
K8Y C17 O18 SING N N 7
K8Y O07 C06 DOUB N N 8
K8Y C13 C12 SING N N 9
K8Y C13 O14 SING N N 10
K8Y C16 C12 DOUB Y N 11
K8Y C16 C20 SING Y N 12
K8Y C12 C11 SING Y N 13
K8Y C04 C05 SING N N 14
K8Y C20 C09 DOUB Y N 15
K8Y C11 C10 DOUB Y N 16
K8Y C06 N08 SING N N 17
K8Y C06 C05 SING N N 18
K8Y C09 C10 SING Y N 19
K8Y C09 N08 SING N N 20
K8Y C10 H1 SING N N 21
K8Y C20 H2 SING N N 22
K8Y C04 H3 SING N N 23
K8Y C04 H4 SING N N 24
K8Y C05 H5 SING N N 25
K8Y C05 H6 SING N N 26
K8Y C11 H7 SING N N 27
K8Y N08 H8 SING N N 28
K8Y O01 H9 SING N N 29
K8Y O14 H10 SING N N 30
K8Y O18 H11 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K8Y SMILES ACDLabs 12.01 c1c(cc(C(O)=O)c(C(O)=O)c1)NC(CCC(O)=O)=O
K8Y InChI InChI 1.03 InChI=1S/C12H11NO7/c14-9(3-4-10(15)16)13-6-1-2-7(11(17)18)8(5-6)12(19)20/h1-2,5H,3-4H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)
K8Y InChIKey InChI 1.03 JVZSGTXFIVTSIN-UHFFFAOYSA-N
K8Y SMILES_CANONICAL CACTVS 3.385 OC(=O)CCC(=O)Nc1ccc(C(O)=O)c(c1)C(O)=O
K8Y SMILES CACTVS 3.385 OC(=O)CCC(=O)Nc1ccc(C(O)=O)c(c1)C(O)=O
K8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(c(cc1NC(=O)CCC(=O)O)C(=O)O)C(=O)O
K8Y SMILES "OpenEye OEToolkits" 2.0.6 c1cc(c(cc1NC(=O)CCC(=O)O)C(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K8Y "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(3-carboxypropanoyl)amino]benzene-1,2-dicarboxylic acid"
K8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]phthalic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K8Y 'Create component' 2018-11-09 RCSB
K8Y 'Initial release' 2019-07-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K8Y C10 C 7.702 0.142 1
K8Y C13 C 5.104 3.143 2
K8Y C17 C 7.702 4.643 3
K8Y C20 C 9.002 2.393 4
K8Y C02 C 12.899 -4.357 5
K8Y C04 C 11.600 -3.607 6
K8Y C05 C 11.600 -2.107 7
K8Y C06 C 10.301 -1.357 8
K8Y C09 C 9.002 0.892 9
K8Y C11 C 6.404 0.892 10
K8Y C12 C 6.404 2.393 11
K8Y C16 C 7.702 3.143 12
K8Y N08 N 10.301 0.142 13
K8Y O01 O 14.198 -3.607 14
K8Y O03 O 12.899 -5.857 15
K8Y O07 O 9.002 -2.107 16
K8Y O14 O 5.104 4.643 17
K8Y O15 O 3.805 2.393 18
K8Y O18 O 6.404 5.393 19
K8Y O19 O 9.002 5.393 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K8Y O03 C02 DOUBLE NONE 1
K8Y O01 C02 SINGLE NONE 2
K8Y O19 C17 DOUBLE NONE 3
K8Y C02 C04 SINGLE NONE 4
K8Y O15 C13 DOUBLE NONE 5
K8Y C17 C16 SINGLE NONE 6
K8Y C17 O18 SINGLE NONE 7
K8Y O07 C06 DOUBLE NONE 8
K8Y C13 C12 SINGLE NONE 9
K8Y C13 O14 SINGLE NONE 10
K8Y C16 C12 DOUBLE NONE 11
K8Y C16 C20 SINGLE NONE 12
K8Y C12 C11 SINGLE NONE 13
K8Y C04 C05 SINGLE NONE 14
K8Y C20 C09 DOUBLE NONE 15
K8Y C11 C10 DOUBLE NONE 16
K8Y C06 N08 SINGLE NONE 17
K8Y C06 C05 SINGLE NONE 18
K8Y C09 C10 SINGLE NONE 19
K8Y C09 N08 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K8Y MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
K8Y amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
K8Y phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K8Y C10 S1 1
K8Y C20 S1 1
K8Y C09 S1 1
K8Y C11 S1 1
K8Y C12 S1 1
K8Y C16 S1 1
K8Y N08 F1 1
K8Y C06 F1 1
K8Y O07 F1 1
K8Y C05 F1 1
K8Y C10 F2 1
K8Y C11 F2 1
K8Y C12 F2 1
K8Y C16 F2 1
K8Y C20 F2 1
K8Y C09 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K8Y
_pdbe_chem_comp_rdkit_properties.exactmw 281.054
_pdbe_chem_comp_rdkit_properties.amw 281.220
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 127.972
_pdbe_chem_comp_rdkit_properties.tpsa 141.000
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.396
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.504
_pdbe_chem_comp_rdkit_properties.chi0v 9.305
_pdbe_chem_comp_rdkit_properties.chi1v 4.626
_pdbe_chem_comp_rdkit_properties.chi2v 1.692
_pdbe_chem_comp_rdkit_properties.chi3v 1.692
_pdbe_chem_comp_rdkit_properties.chi4v 0.992
_pdbe_chem_comp_rdkit_properties.chi0n 20.305
_pdbe_chem_comp_rdkit_properties.chi1n 9.798
_pdbe_chem_comp_rdkit_properties.chi2n 1.692
_pdbe_chem_comp_rdkit_properties.chi3n 1.692
_pdbe_chem_comp_rdkit_properties.chi4n 0.992
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.900
_pdbe_chem_comp_rdkit_properties.kappa1 5.614
_pdbe_chem_comp_rdkit_properties.kappa2 6.320
_pdbe_chem_comp_rdkit_properties.kappa3 4.088
_pdbe_chem_comp_rdkit_properties.Phi 1.774
#
_pdbe_chem_comp_external_mappings.comp_id K8Y
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 138454252
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K8Y C10 -1.075 -1.629 -0.384 ETKDGv3 1
K8Y C13 -4.658 -0.678 -1.054 ETKDGv3 2
K8Y C17 -3.615 1.785 0.300 ETKDGv3 3
K8Y C20 -1.331 0.688 0.316 ETKDGv3 4
K8Y C02 5.455 0.344 0.485 ETKDGv3 5
K8Y C04 4.074 0.319 -0.088 ETKDGv3 6
K8Y C05 3.322 -0.927 0.383 ETKDGv3 7
K8Y C06 1.935 -0.949 -0.183 ETKDGv3 8
K8Y C09 -0.512 -0.358 0.127 ETKDGv3 9
K8Y C11 -2.368 -1.713 -0.707 ETKDGv3 10
K8Y C12 -3.269 -0.542 -0.556 ETKDGv3 11
K8Y C16 -2.776 0.608 -0.024 ETKDGv3 12
K8Y N08 0.876 -0.248 0.488 ETKDGv3 13
K8Y O01 5.679 0.923 1.730 ETKDGv3 14
K8Y O03 6.408 -0.193 -0.141 ETKDGv3 15
K8Y O07 1.729 -1.519 -1.289 ETKDGv3 16
K8Y O14 -5.302 0.396 -1.662 ETKDGv3 17
K8Y O15 -5.246 -1.790 -0.980 ETKDGv3 18
K8Y O18 -3.067 3.063 0.233 ETKDGv3 19
K8Y O19 -4.804 1.641 0.692 ETKDGv3 20
K8Y H1 -0.450 -2.508 -0.479 ETKDGv3 21
K8Y H2 -0.931 1.609 0.723 ETKDGv3 22
K8Y H3 3.531 1.233 0.238 ETKDGv3 23
K8Y H4 4.133 0.327 -1.198 ETKDGv3 24
K8Y H5 3.265 -0.937 1.494 ETKDGv3 25
K8Y H6 3.867 -1.841 0.060 ETKDGv3 26
K8Y H7 -2.755 -2.651 -1.087 ETKDGv3 27
K8Y H8 1.143 0.435 1.233 ETKDGv3 28
K8Y H9 6.605 0.933 2.139 ETKDGv3 29
K8Y H10 -6.244 0.302 -2.022 ETKDGv3 30
K8Y H11 -3.619 3.878 0.472 ETKDGv3 31
#