data_K7U
#
_chem_comp.id K7U
_chem_comp.name 6-[3-(3,3-difluoroazetidin-1-yl)prop-1-yn-1-yl]-4-methylpyridin-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H13 F2 N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-03
_chem_comp.pdbx_modified_date 2022-07-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 237.249
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K7U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TSN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7U C02 C1 C 0 1 Y N N N N N 66.401 28.434 -185.331 4.072 -1.112 -0.345 C02 K7U 1
K7U C03 C2 C 0 1 Y N N N N N 66.438 29.786 -185.641 4.717 0.119 -0.422 C03 K7U 2
K7U C04 C3 C 0 1 Y N N N N N 65.366 30.581 -185.286 4.017 1.272 -0.110 C04 K7U 3
K7U C05 C4 C 0 1 Y N N N N N 64.280 30.016 -184.638 2.690 1.160 0.271 C05 K7U 4
K7U C06 C5 C 0 1 Y N N N N N 64.266 28.671 -184.358 2.102 -0.102 0.328 C06 K7U 5
K7U C07 C6 C 0 1 N N N N N N 65.385 32.050 -185.596 4.686 2.621 -0.183 C07 K7U 6
K7U C08 C7 C 0 1 N N N N N N 63.246 28.149 -183.773 0.731 -0.230 0.720 C08 K7U 7
K7U C09 C8 C 0 1 N N N N N N 62.262 27.753 -183.251 -0.394 -0.334 1.041 C09 K7U 8
K7U C10 C9 C 0 1 N N N N N N 61.083 27.340 -182.476 -1.803 -0.465 1.445 C10 K7U 9
K7U C12 C10 C 0 1 N N N N N N 59.512 27.335 -184.355 -4.041 0.375 1.009 C12 K7U 10
K7U C13 C11 C 0 1 N N N N N N 58.168 27.386 -183.651 -4.473 0.079 -0.438 C13 K7U 11
K7U C14 C12 C 0 1 N N N N N N 58.794 26.651 -182.479 -3.092 -0.577 -0.612 C14 K7U 12
K7U F15 F1 F 0 1 N N N N N N 57.227 26.668 -184.236 -4.656 1.227 -1.217 F15 K7U 13
K7U F16 F2 F 0 1 N N N N N N 57.788 28.633 -183.391 -5.541 -0.820 -0.535 F16 K7U 14
K7U N01 N1 N 0 1 Y N N N N N 65.323 27.906 -184.708 2.803 -1.189 0.022 N01 K7U 15
K7U N02 N2 N 0 1 N N N N N N 67.433 27.622 -185.673 4.767 -2.273 -0.662 N02 K7U 16
K7U N11 N3 N 0 1 N N N N N N 60.071 26.584 -183.217 -2.652 0.283 0.508 N11 K7U 17
K7U H1 H1 H 0 1 N N N N N N 67.291 30.209 -186.151 5.753 0.174 -0.722 H1 K7U 18
K7U H2 H2 H 0 1 N N N N N N 63.442 30.634 -184.352 2.117 2.041 0.521 H2 K7U 19
K7U H3 H3 H 0 1 N N N N N N 64.943 32.222 -186.589 4.558 3.036 -1.182 H3 K7U 20
K7U H4 H4 H 0 1 N N N N N N 64.802 32.592 -184.837 4.234 3.290 0.549 H4 K7U 21
K7U H5 H5 H 0 1 N N N N N N 66.423 32.413 -185.589 5.749 2.511 0.032 H5 K7U 22
K7U H6 H6 H 0 1 N N N N N N 61.430 26.713 -181.641 -2.088 -1.517 1.432 H6 K7U 23
K7U H7 H7 H 0 1 N N N N N N 60.604 28.247 -182.079 -1.932 -0.066 2.451 H7 K7U 24
K7U H8 H8 H 0 1 N N N N N N 59.503 26.776 -185.302 -4.318 1.371 1.355 H8 K7U 25
K7U H9 H9 H 0 1 N N N N N N 59.974 28.320 -184.515 -4.306 -0.411 1.716 H9 K7U 26
K7U H10 H10 H 0 1 N N N N N N 58.840 27.239 -181.551 -3.079 -1.642 -0.380 H10 K7U 27
K7U H11 H11 H 0 1 N N N N N N 58.343 25.670 -182.269 -2.612 -0.344 -1.562 H11 K7U 28
K7U H12 H12 H 0 1 N N N N N N 67.227 26.684 -185.393 4.321 -3.134 -0.614 H12 K7U 29
K7U H13 H13 H 0 1 N N N N N N 67.566 27.652 -186.664 5.697 -2.224 -0.932 H13 K7U 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7U N02 C02 SING N N 1
K7U C03 C02 DOUB Y N 2
K7U C03 C04 SING Y N 3
K7U C07 C04 SING N N 4
K7U C02 N01 SING Y N 5
K7U C04 C05 DOUB Y N 6
K7U N01 C06 DOUB Y N 7
K7U C05 C06 SING Y N 8
K7U C06 C08 SING N N 9
K7U C12 C13 SING N N 10
K7U C12 N11 SING N N 11
K7U F15 C13 SING N N 12
K7U C08 C09 TRIP N N 13
K7U C13 F16 SING N N 14
K7U C13 C14 SING N N 15
K7U C09 C10 SING N N 16
K7U N11 C14 SING N N 17
K7U N11 C10 SING N N 18
K7U C03 H1 SING N N 19
K7U C05 H2 SING N N 20
K7U C07 H3 SING N N 21
K7U C07 H4 SING N N 22
K7U C07 H5 SING N N 23
K7U C10 H6 SING N N 24
K7U C10 H7 SING N N 25
K7U C12 H8 SING N N 26
K7U C12 H9 SING N N 27
K7U C14 H10 SING N N 28
K7U C14 H11 SING N N 29
K7U N02 H12 SING N N 30
K7U N02 H13 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7U SMILES ACDLabs 12.01 "Cc1cc(nc(N)c1)C#CCN1CC(F)(F)C1"
K7U InChI InChI 1.03 InChI=1S/C12H13F2N3/c1-9-5-10(16-11(15)6-9)3-2-4-17-7-12(13,14)8-17/h5-6H,4,7-8H2,1H3,(H2,15,16)
K7U InChIKey InChI 1.03 OJUWVNWEQOIPOJ-UHFFFAOYSA-N
K7U SMILES_CANONICAL CACTVS 3.385 "Cc1cc(N)nc(c1)C#CCN2CC(F)(F)C2"
K7U SMILES CACTVS 3.385 "Cc1cc(N)nc(c1)C#CCN2CC(F)(F)C2"
K7U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1)N)C#CCN2CC(C2)(F)F"
K7U SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1)N)C#CCN2CC(C2)(F)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K7U "SYSTEMATIC NAME" ACDLabs 12.01 6-[3-(3,3-difluoroazetidin-1-yl)prop-1-yn-1-yl]-4-methylpyridin-2-amine
K7U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 6-[3-[3,3-bis(fluoranyl)azetidin-1-yl]prop-1-ynyl]-4-methyl-pyridin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7U 'Create component' 2022-02-03 RCSB
K7U 'Initial release' 2022-07-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K7U C02 C 5.104 -0.750 1
K7U C03 C 5.104 0.750 2
K7U C04 C 6.404 1.500 3
K7U C05 C 7.702 0.750 4
K7U C06 C 7.702 -0.750 5
K7U C07 C 6.404 3.000 6
K7U C08 C 9.002 -1.500 7
K7U C09 C 10.301 -2.250 8
K7U C10 C 11.600 -3.000 9
K7U C12 C 14.348 -2.638 10
K7U C13 C 14.736 -1.189 11
K7U C14 C 13.287 -0.801 12
K7U F15 F 16.185 -1.578 13
K7U F16 F 15.124 0.260 14
K7U N01 N 6.404 -1.500 15
K7U N02 N 3.805 -1.500 16
K7U N11 N 12.899 -2.250 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K7U N02 C02 SINGLE NONE 1
K7U C03 C02 DOUBLE NONE 2
K7U C03 C04 SINGLE NONE 3
K7U C07 C04 SINGLE NONE 4
K7U C02 N01 SINGLE NONE 5
K7U C04 C05 DOUBLE NONE 6
K7U N01 C06 DOUBLE NONE 7
K7U C05 C06 SINGLE NONE 8
K7U C06 C08 SINGLE NONE 9
K7U C12 C13 SINGLE NONE 10
K7U C12 N11 SINGLE NONE 11
K7U F15 C13 SINGLE NONE 12
K7U C08 C09 TRIPLE NONE 13
K7U C13 F16 SINGLE NONE 14
K7U C13 C14 SINGLE NONE 15
K7U C09 C10 SINGLE NONE 16
K7U N11 C14 SINGLE NONE 17
K7U N11 C10 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K7U MurckoScaffold S1 scaffold 'C(#Cc1ccccn1)CN1CCC1' InChI=1S/C11H12N2/c1-2-7-12-11(5-1)6-3-8-13-9-4-10-13/h1-2,5,7H,4,8-10H2 JIKBPOKSZIKAGS-UHFFFAOYSA-N
K7U pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K7U C02 S1 1
K7U C03 S1 1
K7U C04 S1 1
K7U C05 S1 1
K7U C06 S1 1
K7U C08 S1 1
K7U C09 S1 1
K7U C10 S1 1
K7U C12 S1 1
K7U C13 S1 1
K7U C14 S1 1
K7U N01 S1 1
K7U N11 S1 1
K7U C02 F1 1
K7U C03 F1 1
K7U C04 F1 1
K7U C05 F1 1
K7U C06 F1 1
K7U N01 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K7U
_pdbe_chem_comp_rdkit_properties.exactmw 237.108
_pdbe_chem_comp_rdkit_properties.amw 237.253
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 117.011
_pdbe_chem_comp_rdkit_properties.tpsa 42.150
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.785
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.295
_pdbe_chem_comp_rdkit_properties.chi0v 8.098
_pdbe_chem_comp_rdkit_properties.chi1v 4.220
_pdbe_chem_comp_rdkit_properties.chi2v 1.551
_pdbe_chem_comp_rdkit_properties.chi3v 1.551
_pdbe_chem_comp_rdkit_properties.chi4v 0.962
_pdbe_chem_comp_rdkit_properties.chi0n 21.098
_pdbe_chem_comp_rdkit_properties.chi1n 10.614
_pdbe_chem_comp_rdkit_properties.chi2n 1.551
_pdbe_chem_comp_rdkit_properties.chi3n 1.551
_pdbe_chem_comp_rdkit_properties.chi4n 0.962
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.670
_pdbe_chem_comp_rdkit_properties.kappa1 3.659
_pdbe_chem_comp_rdkit_properties.kappa2 4.302
_pdbe_chem_comp_rdkit_properties.kappa3 3.142
_pdbe_chem_comp_rdkit_properties.Phi 0.926
#
_pdbe_chem_comp_external_mappings.comp_id K7U
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 164513486
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K7U C02 -2.435 -1.623 0.064 ETKDGv3 1
K7U C03 -3.538 -0.860 0.097 ETKDGv3 2
K7U C04 -3.408 0.616 0.113 ETKDGv3 3
K7U C05 -2.185 1.167 0.069 ETKDGv3 4
K7U C06 -0.995 0.292 0.038 ETKDGv3 5
K7U C07 -4.633 1.480 0.106 ETKDGv3 6
K7U C08 0.322 0.862 0.007 ETKDGv3 7
K7U C09 1.431 1.334 -0.019 ETKDGv3 8
K7U C10 2.796 1.904 -0.051 ETKDGv3 9
K7U C12 3.780 -0.147 0.936 ETKDGv3 10
K7U C13 3.590 -1.239 -0.102 ETKDGv3 11
K7U C14 3.723 -0.128 -1.129 ETKDGv3 12
K7U F15 2.333 -1.817 -0.073 ETKDGv3 13
K7U F16 4.627 -2.155 -0.139 ETKDGv3 14
K7U N01 -1.137 -1.002 0.037 ETKDGv3 15
K7U N02 -2.535 -3.048 0.051 ETKDGv3 16
K7U N11 3.890 0.902 -0.091 ETKDGv3 17
K7U H1 -4.521 -1.317 0.112 ETKDGv3 18
K7U H2 -2.063 2.244 0.054 ETKDGv3 19
K7U H3 -5.508 0.922 0.499 ETKDGv3 20
K7U H4 -4.850 1.806 -0.933 ETKDGv3 21
K7U H5 -4.481 2.377 0.745 ETKDGv3 22
K7U H6 2.928 2.545 0.845 ETKDGv3 23
K7U H7 2.879 2.562 -0.941 ETKDGv3 24
K7U H8 4.740 -0.254 1.487 ETKDGv3 25
K7U H9 2.913 -0.037 1.625 ETKDGv3 26
K7U H10 4.651 -0.224 -1.734 ETKDGv3 27
K7U H11 2.819 -0.006 -1.766 ETKDGv3 28
K7U H12 -3.464 -3.526 0.069 ETKDGv3 29
K7U H13 -1.670 -3.631 0.024 ETKDGv3 30
#