data_K5T
#
_chem_comp.id K5T
_chem_comp.name
"(2~{R})-2-[[(2~{S})-2-[[(4~{R})-5-azanyl-4-[[(2~{S})-2-azanylpropanoyl]amino]-5-oxidanylidene-pentanoyl]amino]-6-[2-[2-[2-[2-(2-azanylethanoylamino)ethanoylamino]ethanoylamino]ethanoylamino]ethanoylamino]hexanoyl]amino]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H47 N11 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-26
_chem_comp.pdbx_modified_date 2019-10-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 701.729
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K5T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RJE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K5T C10 C1 C 0 1 N N N N N N 8.758 18.379 -11.055 -8.645 0.116 -0.160 C10 K5T 1
K5T N12 N1 N 0 1 N N N N N N 7.500 20.085 -9.901 -11.049 -0.219 -0.179 N12 K5T 2
K5T C13 C2 C 0 1 N N N N N N 6.541 20.639 -10.800 -12.329 0.037 0.155 C13 K5T 3
K5T C17 C3 C 0 1 N N N N N N 8.896 23.956 -8.735 -17.192 -0.458 0.262 C17 K5T 4
K5T C24 C4 C 0 1 N N N N N N 17.714 12.348 -17.048 7.764 5.688 1.839 C24 K5T 5
K5T C28 C5 C 0 1 N N R N N N 17.595 13.527 -17.989 8.089 5.170 0.437 C28 K5T 6
K5T C01 C6 C 0 1 N N N N N N 10.714 12.356 -18.213 1.006 1.318 -0.198 C01 K5T 7
K5T N02 N2 N 0 1 N N N N N N 9.878 13.265 -17.508 -0.281 1.796 0.313 N02 K5T 8
K5T C03 C7 C 0 1 N N N N N N 10.331 13.910 -16.322 -1.423 1.182 -0.056 C03 K5T 9
K5T C04 C8 C 0 1 N N N N N N 9.423 14.875 -15.584 -2.747 1.673 0.470 C04 K5T 10
K5T N05 N3 N 0 1 N N N N N N 10.063 15.371 -14.417 -3.826 0.846 -0.076 N05 K5T 11
K5T C06 C9 C 0 1 N N N N N N 9.377 16.212 -13.503 -5.106 1.103 0.259 C06 K5T 12
K5T O07 O1 O 0 1 N N N N N N 8.220 16.523 -13.708 -5.365 2.018 1.012 O07 K5T 13
K5T C08 C10 C 0 1 N N N N N N 10.109 16.721 -12.275 -6.216 0.252 -0.302 C08 K5T 14
K5T N09 N4 N 0 1 N N N N N N 9.208 17.047 -11.232 -7.504 0.730 0.210 N09 K5T 15
K5T C11 C11 C 0 1 N N N N N N 7.793 18.698 -9.932 -9.969 0.608 0.366 C11 K5T 16
K5T C14 C12 C 0 1 N N N N N N 6.225 22.120 -10.790 -13.439 -0.813 -0.405 C14 K5T 17
K5T N15 N5 N 0 1 N N N N N N 6.917 22.771 -9.738 -14.726 -0.336 0.106 N15 K5T 18
K5T C16 C13 C 0 1 N N N N N N 8.226 23.285 -9.922 -15.868 -0.949 -0.264 C16 K5T 19
K5T N18 N6 N 0 1 N N N N N N 10.085 24.659 -9.081 -18.274 -1.287 -0.285 N18 K5T 20
K5T O19 O2 O 0 1 N N N N N N 8.787 23.184 -11.003 -15.830 -1.897 -1.020 O19 K5T 21
K5T O20 O3 O 0 1 N N N N N N 5.970 19.918 -11.594 -12.587 0.952 0.908 O20 K5T 22
K5T O21 O4 O 0 1 N N N N N N 9.144 19.258 -11.801 -8.608 -0.828 -0.920 O21 K5T 23
K5T O22 O5 O 0 1 N N N N N N 11.448 13.693 -15.890 -1.385 0.234 -0.812 O22 K5T 24
K5T C23 C14 C 0 1 N N N N N N 10.982 12.842 -19.622 2.133 2.181 0.372 C23 K5T 25
K5T O25 O6 O 0 1 N N N N N N 17.994 15.547 -16.740 9.118 7.290 -0.301 O25 K5T 26
K5T O26 O7 O 0 1 N N N N N N 19.607 14.847 -18.024 7.464 6.405 -1.470 O26 K5T 27
K5T C27 C15 C 0 1 N N N N N N 18.445 14.703 -17.559 8.200 6.334 -0.515 C27 K5T 28
K5T N29 N7 N 0 1 N N N N N N 16.233 13.913 -18.148 7.022 4.273 -0.012 N29 K5T 29
K5T O30 O8 O 0 1 N N N N N N 16.483 14.621 -20.324 7.953 2.542 1.018 O30 K5T 30
K5T C31 C16 C 0 1 N N N N N N 15.747 14.463 -19.370 7.047 2.970 0.335 C31 K5T 31
K5T O32 O9 O 0 1 N N N N N N 14.601 17.617 -19.324 7.533 0.233 -1.337 O32 K5T 32
K5T N33 N8 N 0 1 N N N N N N 15.495 20.350 -24.174 10.743 -3.812 -1.220 N33 K5T 33
K5T O34 O10 O 0 1 N N N N N N 15.901 21.036 -22.034 9.232 -5.373 -1.669 O34 K5T 34
K5T C35 C17 C 0 1 N N N N N N 15.093 20.626 -22.844 9.513 -4.347 -1.087 C35 K5T 35
K5T O36 O11 O 0 1 N N N N N N 12.809 22.322 -24.283 7.966 -5.782 1.378 O36 K5T 36
K5T C37 C18 C 0 1 N N N N N N 13.136 24.778 -21.877 4.721 -5.527 1.366 C37 K5T 37
K5T N38 N9 N 0 1 N N N N N N 10.903 23.845 -22.083 6.028 -7.591 1.198 N38 K5T 38
K5T C39 C19 C 0 1 N N S N N N 12.169 23.971 -22.719 5.800 -6.277 0.582 C39 K5T 39
K5T C40 C20 C 0 1 N N N N N N 12.716 22.614 -23.106 7.081 -5.483 0.604 C40 K5T 40
K5T N41 N10 N 0 1 N N N N N N 13.117 21.695 -22.094 7.242 -4.442 -0.236 N41 K5T 41
K5T C42 C21 C 0 1 N N R N N N 13.651 20.420 -22.430 8.488 -3.670 -0.215 C42 K5T 42
K5T C43 C22 C 0 1 N N N N N N 13.515 19.444 -21.274 8.222 -2.259 -0.742 C43 K5T 43
K5T C44 C23 C 0 1 N N N N N N 14.062 18.066 -21.596 7.276 -1.528 0.213 C44 K5T 44
K5T C45 C24 C 0 1 N N N N N N 14.278 17.159 -20.401 7.014 -0.137 -0.305 C45 K5T 45
K5T N46 N11 N 0 1 N N N N N N 14.105 15.761 -20.567 6.203 0.695 0.377 N46 K5T 46
K5T C47 C25 C 0 1 N N S N N N 14.292 14.854 -19.491 5.949 2.047 -0.127 C47 K5T 47
K5T C48 C26 C 0 1 N N N N N N 13.383 13.656 -19.667 4.605 2.546 0.407 C48 K5T 48
K5T C49 C27 C 0 1 N N N N N N 11.915 14.032 -19.671 3.477 1.682 -0.162 C49 K5T 49
K5T H1 H1 H 0 1 N N N N N N 7.968 20.678 -9.246 -10.842 -0.951 -0.781 H1 K5T 50
K5T H2 H2 H 0 1 N N N N N N 8.186 24.669 -8.291 -17.198 -0.524 1.350 H2 K5T 51
K5T H3 H3 H 0 1 N N N N N N 9.151 23.183 -7.995 -17.340 0.579 -0.040 H3 K5T 52
K5T H4 H4 H 0 1 N N N N N N 18.773 12.069 -16.941 8.558 6.356 2.173 H4 K5T 53
K5T H5 H5 H 0 1 N N N N N N 17.306 12.622 -16.064 6.819 6.231 1.816 H5 K5T 54
K5T H6 H6 H 0 1 N N N N N N 17.149 11.496 -17.455 7.684 4.847 2.528 H6 K5T 55
K5T H7 H7 H 0 1 N N N N N N 17.973 13.197 -18.968 9.035 4.628 0.460 H7 K5T 56
K5T H8 H8 H 0 1 N N N N N N 10.219 11.375 -18.260 1.155 0.281 0.104 H8 K5T 57
K5T H9 H9 H 0 1 N N N N N N 11.670 12.259 -17.678 1.012 1.384 -1.286 H9 K5T 58
K5T H10 H10 H 0 1 N N N N N N 8.958 13.454 -17.850 -0.312 2.553 0.918 H10 K5T 59
K5T H11 H11 H 0 1 N N N N N N 9.176 15.718 -16.247 -2.753 1.607 1.558 H11 K5T 60
K5T H12 H12 H 0 1 N N N N N N 8.499 14.353 -15.295 -2.895 2.710 0.168 H12 K5T 61
K5T H13 H13 H 0 1 N N N N N N 11.015 15.123 -14.236 -3.619 0.115 -0.678 H13 K5T 62
K5T H14 H14 H 0 1 N N N N N N 10.799 15.941 -11.921 -6.211 0.318 -1.390 H14 K5T 63
K5T H15 H15 H 0 1 N N N N N N 10.681 17.620 -12.547 -6.068 -0.785 0.000 H15 K5T 64
K5T H16 H16 H 0 1 N N N N N N 8.886 16.330 -10.614 -7.534 1.488 0.814 H16 K5T 65
K5T H17 H17 H 0 1 N N N N N N 6.860 18.135 -10.087 -9.975 0.541 1.454 H17 K5T 66
K5T H18 H18 H 0 1 N N N N N N 8.245 18.403 -8.973 -10.118 1.644 0.064 H18 K5T 67
K5T H19 H19 H 0 1 N N N N N N 6.530 22.561 -11.750 -13.433 -0.747 -1.493 H19 K5T 68
K5T H20 H20 H 0 1 N N N N N N 5.143 22.258 -10.650 -13.290 -1.850 -0.104 H20 K5T 69
K5T H21 H21 H 0 1 N N N N N N 6.473 22.870 -8.847 -14.757 0.422 0.711 H21 K5T 70
K5T H22 H22 H 0 1 N N N N N N 10.477 25.076 -8.261 -19.173 -0.978 0.054 H22 K5T 71
K5T H24 H24 H 0 1 N N N N N N 10.745 24.022 -9.478 -18.250 -1.294 -1.293 H24 K5T 72
K5T H25 H25 H 0 1 N N N N N N 10.025 13.128 -20.082 1.985 3.218 0.070 H25 K5T 73
K5T H26 H26 H 0 1 N N N N N N 11.433 12.019 -20.196 2.127 2.115 1.460 H26 K5T 74
K5T H27 H27 H 0 1 N N N N N N 18.648 16.218 -16.583 9.151 8.016 -0.939 H27 K5T 75
K5T H28 H28 H 0 1 N N N N N N 15.601 13.795 -17.382 6.298 4.616 -0.558 H28 K5T 76
K5T H29 H29 H 0 1 N N N N N N 16.446 20.492 -24.449 10.968 -2.992 -0.755 H29 K5T 77
K5T H30 H30 H 0 1 N N N N N N 14.828 20.013 -24.838 11.403 -4.248 -1.782 H30 K5T 78
K5T H31 H31 H 0 1 N N N N N N 12.684 25.750 -21.628 5.048 -5.393 2.397 H31 K5T 79
K5T H32 H32 H 0 1 N N N N N N 13.360 24.230 -20.950 4.552 -4.552 0.909 H32 K5T 80
K5T H33 H33 H 0 1 N N N N N N 14.066 24.940 -22.441 3.795 -6.101 1.350 H33 K5T 81
K5T H34 H34 H 0 1 N N N N N N 10.561 24.752 -21.837 6.689 -8.132 0.661 H34 K5T 82
K5T H35 H35 H 0 1 N N N N N N 10.258 23.405 -22.708 6.332 -7.494 2.155 H35 K5T 83
K5T H37 H37 H 0 1 N N N N N N 12.021 24.531 -23.654 5.473 -6.411 -0.449 H37 K5T 84
K5T H38 H38 H 0 1 N N N N N N 13.022 21.950 -21.132 6.535 -4.203 -0.855 H38 K5T 85
K5T H39 H39 H 0 1 N N N N N N 13.102 20.010 -23.291 8.862 -3.612 0.807 H39 K5T 86
K5T H40 H40 H 0 1 N N N N N N 14.063 19.846 -20.409 9.163 -1.713 -0.809 H40 K5T 87
K5T H41 H41 H 0 1 N N N N N N 12.449 19.348 -21.020 7.765 -2.319 -1.729 H41 K5T 88
K5T H42 H42 H 0 1 N N N N N N 13.354 17.570 -22.276 6.335 -2.073 0.281 H42 K5T 89
K5T H43 H43 H 0 1 N N N N N N 15.029 18.195 -22.104 7.733 -1.467 1.201 H43 K5T 90
K5T H44 H44 H 0 1 N N N N N N 13.845 15.405 -21.465 5.789 0.400 1.203 H44 K5T 91
K5T H45 H45 H 0 1 N N N N N N 14.004 15.353 -18.554 5.923 2.029 -1.217 H45 K5T 92
K5T H46 H46 H 0 1 N N N N N N 13.564 12.952 -18.841 4.599 2.480 1.495 H46 K5T 93
K5T H47 H47 H 0 1 N N N N N N 13.624 13.169 -20.623 4.456 3.583 0.105 H47 K5T 94
K5T H48 H48 H 0 1 N N N N N N 11.716 14.665 -18.794 3.626 0.646 0.139 H48 K5T 95
K5T H49 H49 H 0 1 N N N N N N 11.705 14.601 -20.589 3.483 1.749 -1.250 H49 K5T 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K5T O36 C40 DOUB N N 1
K5T N33 C35 SING N N 2
K5T C40 C39 SING N N 3
K5T C40 N41 SING N N 4
K5T C35 C42 SING N N 5
K5T C35 O34 DOUB N N 6
K5T C39 N38 SING N N 7
K5T C39 C37 SING N N 8
K5T C42 N41 SING N N 9
K5T C42 C43 SING N N 10
K5T C44 C43 SING N N 11
K5T C44 C45 SING N N 12
K5T N46 C45 SING N N 13
K5T N46 C47 SING N N 14
K5T C45 O32 DOUB N N 15
K5T O30 C31 DOUB N N 16
K5T C49 C48 SING N N 17
K5T C49 C23 SING N N 18
K5T C48 C47 SING N N 19
K5T C23 C01 SING N N 20
K5T C47 C31 SING N N 21
K5T C31 N29 SING N N 22
K5T C01 N02 SING N N 23
K5T N29 C28 SING N N 24
K5T O26 C27 DOUB N N 25
K5T C28 C27 SING N N 26
K5T C28 C24 SING N N 27
K5T C27 O25 SING N N 28
K5T N02 C03 SING N N 29
K5T C03 O22 DOUB N N 30
K5T C03 C04 SING N N 31
K5T C04 N05 SING N N 32
K5T N05 C06 SING N N 33
K5T O07 C06 DOUB N N 34
K5T C06 C08 SING N N 35
K5T C08 N09 SING N N 36
K5T O21 C10 DOUB N N 37
K5T O20 C13 DOUB N N 38
K5T N09 C10 SING N N 39
K5T C10 C11 SING N N 40
K5T O19 C16 DOUB N N 41
K5T C13 C14 SING N N 42
K5T C13 N12 SING N N 43
K5T C14 N15 SING N N 44
K5T C11 N12 SING N N 45
K5T C16 N15 SING N N 46
K5T C16 C17 SING N N 47
K5T N18 C17 SING N N 48
K5T N12 H1 SING N N 49
K5T C17 H2 SING N N 50
K5T C17 H3 SING N N 51
K5T C24 H4 SING N N 52
K5T C24 H5 SING N N 53
K5T C24 H6 SING N N 54
K5T C28 H7 SING N N 55
K5T C01 H8 SING N N 56
K5T C01 H9 SING N N 57
K5T N02 H10 SING N N 58
K5T C04 H11 SING N N 59
K5T C04 H12 SING N N 60
K5T N05 H13 SING N N 61
K5T C08 H14 SING N N 62
K5T C08 H15 SING N N 63
K5T N09 H16 SING N N 64
K5T C11 H17 SING N N 65
K5T C11 H18 SING N N 66
K5T C14 H19 SING N N 67
K5T C14 H20 SING N N 68
K5T N15 H21 SING N N 69
K5T N18 H22 SING N N 70
K5T N18 H24 SING N N 71
K5T C23 H25 SING N N 72
K5T C23 H26 SING N N 73
K5T O25 H27 SING N N 74
K5T N29 H28 SING N N 75
K5T N33 H29 SING N N 76
K5T N33 H30 SING N N 77
K5T C37 H31 SING N N 78
K5T C37 H32 SING N N 79
K5T C37 H33 SING N N 80
K5T N38 H34 SING N N 81
K5T N38 H35 SING N N 82
K5T C39 H37 SING N N 83
K5T N41 H38 SING N N 84
K5T C42 H39 SING N N 85
K5T C43 H40 SING N N 86
K5T C43 H41 SING N N 87
K5T C44 H42 SING N N 88
K5T C44 H43 SING N N 89
K5T N46 H44 SING N N 90
K5T C47 H45 SING N N 91
K5T C48 H46 SING N N 92
K5T C48 H47 SING N N 93
K5T C49 H48 SING N N 94
K5T C49 H49 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K5T InChI InChI 1.03 InChI=1S/C27H47N11O11/c1-14(29)25(46)38-16(24(30)45)6-7-18(39)37-17(26(47)36-15(2)27(48)49)5-3-4-8-31-20(41)10-33-22(43)12-35-23(44)13-34-21(42)11-32-19(40)9-28/h14-17H,3-13,28-29H2,1-2H3,(H2,30,45)(H,31,41)(H,32,40)(H,33,43)(H,34,42)(H,35,44)(H,36,47)(H,37,39)(H,38,46)(H,48,49)/t14-,15+,16+,17-/m0/s1
K5T InChIKey InChI 1.03 HUYIRRKHPBSVEV-HZMVEIRTSA-N
K5T SMILES_CANONICAL CACTVS 3.385 C[C@H](N)C(=O)N[C@H](CCC(=O)N[C@@H](CCCCNC(=O)CNC(=O)CNC(=O)CNC(=O)CNC(=O)CN)C(=O)N[C@H](C)C(O)=O)C(N)=O
K5T SMILES CACTVS 3.385 C[CH](N)C(=O)N[CH](CCC(=O)N[CH](CCCCNC(=O)CNC(=O)CNC(=O)CNC(=O)CNC(=O)CN)C(=O)N[CH](C)C(O)=O)C(N)=O
K5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H](C(=O)N[C@H](CCC(=O)N[C@@H](CCCCNC(=O)CNC(=O)CNC(=O)CNC(=O)CNC(=O)CN)C(=O)N[C@H](C)C(=O)O)C(=O)N)N
K5T SMILES "OpenEye OEToolkits" 2.0.7 CC(C(=O)NC(CCC(=O)NC(CCCCNC(=O)CNC(=O)CNC(=O)CNC(=O)CNC(=O)CN)C(=O)NC(C)C(=O)O)C(=O)N)N
#
_pdbx_chem_comp_identifier.comp_id K5T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{R})-2-[[(2~{S})-2-[[(4~{R})-5-azanyl-4-[[(2~{S})-2-azanylpropanoyl]amino]-5-oxidanylidene-pentanoyl]amino]-6-[2-[2-[2-[2-(2-azanylethanoylamino)ethanoylamino]ethanoylamino]ethanoylamino]ethanoylamino]hexanoyl]amino]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K5T 'Create component' 2019-04-26 PDBE
K5T 'Initial release' 2019-10-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K5T C10 C 9.002 -3.750 1
K5T N12 N 7.702 -6.000 2
K5T C13 C 7.702 -7.500 3
K5T C17 C 5.104 -12.000 4
K5T C24 C 12.698 12.000 5
K5T C28 C 12.698 10.500 6
K5T C01 C 14.198 5.250 7
K5T N02 N 14.198 3.750 8
K5T C03 C 12.899 3.000 9
K5T C04 C 12.899 1.500 10
K5T N05 N 11.600 0.750 11
K5T C06 C 11.600 -0.750 12
K5T O07 O 12.899 -1.500 13
K5T C08 C 10.301 -1.500 14
K5T N09 N 10.301 -3.000 15
K5T C11 C 9.002 -5.250 16
K5T C14 C 6.404 -8.250 17
K5T N15 N 6.404 -9.750 18
K5T C16 C 5.104 -10.500 19
K5T N18 N 3.805 -12.750 20
K5T O19 O 3.805 -9.750 21
K5T O20 O 9.002 -8.250 22
K5T O21 O 7.702 -3.000 23
K5T O22 O 11.600 3.750 24
K5T C23 C 15.497 6.000 25
K5T O25 O 11.399 8.250 26
K5T O26 O 10.100 10.500 27
K5T C27 C 11.399 9.750 28
K5T N29 N 13.997 9.750 29
K5T O30 O 15.497 12.000 30
K5T C31 C 15.497 10.500 31
K5T O32 O 19.394 8.250 32
K5T N33 N 21.992 12.750 33
K5T O34 O 24.590 12.750 34
K5T C35 C 23.291 12.000 35
K5T O36 O 23.291 7.500 36
K5T C37 C 27.188 8.250 37
K5T N38 N 25.889 6.000 38
K5T C39 C 25.889 7.500 39
K5T C40 C 24.590 8.250 40
K5T N41 N 24.590 9.750 41
K5T C42 C 23.291 10.500 42
K5T C43 C 21.992 9.750 43
K5T C44 C 20.693 10.500 44
K5T C45 C 19.394 9.750 45
K5T N46 N 18.095 10.500 46
K5T C47 C 16.796 9.750 47
K5T C48 C 16.796 8.250 48
K5T C49 C 15.497 7.500 49
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K5T O36 C40 DOUBLE NONE 1
K5T N33 C35 SINGLE NONE 2
K5T C40 C39 SINGLE NONE 3
K5T C40 N41 SINGLE NONE 4
K5T C35 C42 SINGLE NONE 5
K5T C35 O34 DOUBLE NONE 6
K5T C39 N38 SINGLE NONE 7
K5T C39 C37 SINGLE BEGINDASH 8
K5T C42 N41 SINGLE NONE 9
K5T C42 C43 SINGLE BEGINDASH 10
K5T C44 C43 SINGLE NONE 11
K5T C44 C45 SINGLE NONE 12
K5T N46 C45 SINGLE NONE 13
K5T N46 C47 SINGLE NONE 14
K5T C45 O32 DOUBLE NONE 15
K5T O30 C31 DOUBLE NONE 16
K5T C49 C48 SINGLE NONE 17
K5T C49 C23 SINGLE NONE 18
K5T C47 C48 SINGLE BEGINWEDGE 19
K5T C23 C01 SINGLE NONE 20
K5T C47 C31 SINGLE NONE 21
K5T C31 N29 SINGLE NONE 22
K5T C01 N02 SINGLE NONE 23
K5T N29 C28 SINGLE NONE 24
K5T O26 C27 DOUBLE NONE 25
K5T C28 C27 SINGLE NONE 26
K5T C28 C24 SINGLE BEGINWEDGE 27
K5T C27 O25 SINGLE NONE 28
K5T N02 C03 SINGLE NONE 29
K5T C03 O22 DOUBLE NONE 30
K5T C03 C04 SINGLE NONE 31
K5T C04 N05 SINGLE NONE 32
K5T N05 C06 SINGLE NONE 33
K5T O07 C06 DOUBLE NONE 34
K5T C06 C08 SINGLE NONE 35
K5T C08 N09 SINGLE NONE 36
K5T O21 C10 DOUBLE NONE 37
K5T O20 C13 DOUBLE NONE 38
K5T N09 C10 SINGLE NONE 39
K5T C10 C11 SINGLE NONE 40
K5T O19 C16 DOUBLE NONE 41
K5T C13 C14 SINGLE NONE 42
K5T C13 N12 SINGLE NONE 43
K5T C14 N15 SINGLE NONE 44
K5T C11 N12 SINGLE NONE 45
K5T C16 N15 SINGLE NONE 46
K5T C16 C17 SINGLE NONE 47
K5T N18 C17 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K5T amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
K5T peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K5T N12 F1 1
K5T C13 F1 1
K5T O20 F1 1
K5T C14 F1 1
K5T N02 F1 2
K5T C03 F1 2
K5T O22 F1 2
K5T C04 F1 2
K5T N05 F1 3
K5T C06 F1 3
K5T O07 F1 3
K5T C08 F1 3
K5T N09 F1 4
K5T C10 F1 4
K5T O21 F1 4
K5T C11 F1 4
K5T N15 F1 5
K5T C16 F1 5
K5T O19 F1 5
K5T C17 F1 5
K5T N29 F1 6
K5T C31 F1 6
K5T O30 F1 6
K5T C47 F1 6
K5T N33 F1 7
K5T C35 F1 7
K5T O34 F1 7
K5T C42 F1 7
K5T N41 F1 8
K5T C40 F1 8
K5T O36 F1 8
K5T C39 F1 8
K5T N46 F1 9
K5T C45 F1 9
K5T O32 F1 9
K5T C44 F1 9
K5T O07 F2 1
K5T C06 F2 1
K5T C08 F2 1
K5T N09 F2 1
K5T O19 F2 2
K5T C16 F2 2
K5T C17 F2 2
K5T N18 F2 2
K5T O20 F2 3
K5T C13 F2 3
K5T C14 F2 3
K5T N15 F2 3
K5T O21 F2 4
K5T C10 F2 4
K5T C11 F2 4
K5T N12 F2 4
K5T O22 F2 5
K5T C03 F2 5
K5T C04 F2 5
K5T N05 F2 5
K5T O26 F2 6
K5T C27 F2 6
K5T C28 F2 6
K5T N29 F2 6
K5T O30 F2 7
K5T C31 F2 7
K5T C47 F2 7
K5T N46 F2 7
K5T O34 F2 8
K5T C35 F2 8
K5T C42 F2 8
K5T N41 F2 8
K5T O36 F2 9
K5T C40 F2 9
K5T C39 F2 9
K5T N38 F2 9
#
_pdbe_chem_comp_rdkit_properties.comp_id K5T
_pdbe_chem_comp_rdkit_properties.exactmw 701.346
_pdbe_chem_comp_rdkit_properties.amw 701.739
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 22
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 15
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 28
_pdbe_chem_comp_rdkit_properties.NumHBD 12
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 49
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 9
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.630
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 347.989
_pdbe_chem_comp_rdkit_properties.tpsa 365.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP -7.132
_pdbe_chem_comp_rdkit_properties.CrippenMR 169.134
_pdbe_chem_comp_rdkit_properties.chi0v 22.910
_pdbe_chem_comp_rdkit_properties.chi1v 10.994
_pdbe_chem_comp_rdkit_properties.chi2v 3.294
_pdbe_chem_comp_rdkit_properties.chi3v 3.294
_pdbe_chem_comp_rdkit_properties.chi4v 1.572
_pdbe_chem_comp_rdkit_properties.chi0n 69.910
_pdbe_chem_comp_rdkit_properties.chi1n 33.663
_pdbe_chem_comp_rdkit_properties.chi2n 3.294
_pdbe_chem_comp_rdkit_properties.chi3n 3.294
_pdbe_chem_comp_rdkit_properties.chi4n 1.572
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.380
_pdbe_chem_comp_rdkit_properties.kappa1 9.865
_pdbe_chem_comp_rdkit_properties.kappa2 23.865
_pdbe_chem_comp_rdkit_properties.kappa3 21.181
_pdbe_chem_comp_rdkit_properties.Phi 4.805
#
_pdbe_chem_comp_external_mappings.comp_id K5T
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 139210944
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K5T C10 5.378 -2.698 -1.266 ETKDGv3 1
K5T N12 6.857 -4.560 -0.783 ETKDGv3 2
K5T C13 7.869 -4.083 0.115 ETKDGv3 3
K5T C17 9.231 -7.733 2.358 ETKDGv3 4
K5T C24 -6.325 4.732 -4.286 ETKDGv3 5
K5T C28 -6.608 4.534 -2.795 ETKDGv3 6
K5T C01 0.758 3.387 -3.582 ETKDGv3 7
K5T N02 1.079 2.026 -3.151 ETKDGv3 8
K5T C03 1.097 1.628 -1.772 ETKDGv3 9
K5T C04 1.277 0.187 -1.403 ETKDGv3 10
K5T N05 2.585 -0.016 -0.786 ETKDGv3 11
K5T C06 3.804 0.018 -1.540 ETKDGv3 12
K5T O07 3.780 0.219 -2.784 ETKDGv3 13
K5T C08 5.116 -0.209 -0.853 ETKDGv3 14
K5T N09 5.203 -1.586 -0.375 ETKDGv3 15
K5T C11 5.475 -4.093 -0.726 ETKDGv3 16
K5T C14 9.270 -4.608 0.027 ETKDGv3 17
K5T N15 9.532 -5.531 1.128 ETKDGv3 18
K5T C16 8.981 -6.855 1.172 ETKDGv3 19
K5T N18 8.256 -7.442 3.404 ETKDGv3 20
K5T O19 8.251 -7.273 0.233 ETKDGv3 21
K5T O20 7.582 -3.239 1.008 ETKDGv3 22
K5T O21 5.478 -2.509 -2.508 ETKDGv3 23
K5T O22 0.980 2.486 -0.856 ETKDGv3 24
K5T C23 -0.633 3.443 -4.229 ETKDGv3 25
K5T O25 -8.766 5.204 -1.717 ETKDGv3 26
K5T O26 -7.258 6.806 -2.372 ETKDGv3 27
K5T C27 -7.556 5.584 -2.289 ETKDGv3 28
K5T N29 -5.355 4.575 -2.037 ETKDGv3 29
K5T O30 -4.844 2.326 -2.415 ETKDGv3 30
K5T C31 -4.501 3.429 -1.906 ETKDGv3 31
K5T O32 -1.486 3.382 1.098 ETKDGv3 32
K5T N33 -5.573 1.762 0.921 ETKDGv3 33
K5T O34 -4.543 2.819 2.715 ETKDGv3 34
K5T C35 -4.665 1.772 2.023 ETKDGv3 35
K5T O36 -3.954 -2.257 3.041 ETKDGv3 36
K5T C37 -3.753 -2.124 6.187 ETKDGv3 37
K5T N38 -5.635 -3.242 5.035 ETKDGv3 38
K5T C39 -4.927 -1.972 5.213 ETKDGv3 39
K5T C40 -4.438 -1.455 3.886 ETKDGv3 40
K5T N41 -4.465 -0.046 3.612 ETKDGv3 41
K5T C42 -3.894 0.528 2.391 ETKDGv3 42
K5T C43 -2.391 0.814 2.608 ETKDGv3 43
K5T C44 -1.604 1.007 1.301 ETKDGv3 44
K5T C45 -1.938 2.304 0.625 ETKDGv3 45
K5T N46 -2.786 2.317 -0.533 ETKDGv3 46
K5T C47 -3.168 3.563 -1.209 ETKDGv3 47
K5T C48 -2.063 4.019 -2.182 ETKDGv3 48
K5T C49 -1.774 2.997 -3.298 ETKDGv3 49
K5T H1 7.107 -5.284 -1.494 ETKDGv3 50
K5T H2 9.141 -8.799 2.056 ETKDGv3 51
K5T H3 10.263 -7.569 2.741 ETKDGv3 52
K5T H4 -5.670 3.917 -4.659 ETKDGv3 53
K5T H5 -7.275 4.710 -4.862 ETKDGv3 54
K5T H6 -5.816 5.704 -4.461 ETKDGv3 55
K5T H7 -7.092 3.542 -2.657 ETKDGv3 56
K5T H8 0.831 4.107 -2.741 ETKDGv3 57
K5T H9 1.510 3.704 -4.335 ETKDGv3 58
K5T H10 1.206 1.298 -3.889 ETKDGv3 59
K5T H11 1.172 -0.471 -2.292 ETKDGv3 60
K5T H12 0.482 -0.099 -0.682 ETKDGv3 61
K5T H13 2.628 -0.215 0.239 ETKDGv3 62
K5T H14 5.964 0.009 -1.537 ETKDGv3 63
K5T H15 5.189 0.487 0.011 ETKDGv3 64
K5T H16 5.153 -1.759 0.654 ETKDGv3 65
K5T H17 5.099 -4.144 0.318 ETKDGv3 66
K5T H18 4.835 -4.760 -1.343 ETKDGv3 67
K5T H19 9.976 -3.752 0.088 ETKDGv3 68
K5T H20 9.445 -5.116 -0.945 ETKDGv3 69
K5T H21 10.148 -5.211 1.909 ETKDGv3 70
K5T H22 8.463 -6.492 3.790 ETKDGv3 71
K5T H24 8.415 -8.120 4.184 ETKDGv3 72
K5T H25 -0.828 4.478 -4.586 ETKDGv3 73
K5T H26 -0.631 2.783 -5.124 ETKDGv3 74
K5T H27 -9.416 5.898 -1.367 ETKDGv3 75
K5T H28 -5.009 5.494 -1.677 ETKDGv3 76
K5T H29 -6.110 2.623 0.675 ETKDGv3 77
K5T H30 -5.704 0.905 0.340 ETKDGv3 78
K5T H31 -4.119 -2.485 7.171 ETKDGv3 79
K5T H32 -3.007 -2.848 5.794 ETKDGv3 80
K5T H33 -3.255 -1.142 6.338 ETKDGv3 81
K5T H34 -4.951 -3.995 4.790 ETKDGv3 82
K5T H35 -6.072 -3.510 5.948 ETKDGv3 83
K5T H37 -5.641 -1.234 5.641 ETKDGv3 84
K5T H38 -4.767 0.601 4.376 ETKDGv3 85
K5T H39 -4.000 -0.207 1.562 ETKDGv3 86
K5T H40 -2.247 1.690 3.279 ETKDGv3 87
K5T H41 -1.941 -0.060 3.130 ETKDGv3 88
K5T H42 -1.788 0.152 0.616 ETKDGv3 89
K5T H43 -0.518 1.006 1.536 ETKDGv3 90
K5T H44 -3.088 1.399 -0.931 ETKDGv3 91
K5T H45 -3.288 4.357 -0.439 ETKDGv3 92
K5T H46 -1.142 4.201 -1.591 ETKDGv3 93
K5T H47 -2.359 4.988 -2.641 ETKDGv3 94
K5T H48 -1.541 2.002 -2.865 ETKDGv3 95
K5T H49 -2.687 2.880 -3.921 ETKDGv3 96
#