data_K36
#
_chem_comp.id K36
_chem_comp.name
'(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid'
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C21 H31 N3 O8 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms GC376
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-11-22
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 485.551
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K36
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3UR9
_chem_comp.pdbx_subcomponent_list 'PHQ LEU 04F'
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K36 C7 C7 C 0 1 N N N N N N -23.018 -20.678 36.180 5.319 0.339 -0.815 C7 PHQ 1
K36 O8 O8 O 0 1 N N N N N N -22.329 -21.592 35.326 4.210 -0.168 -0.027 O8 PHQ 2
K36 C9 C9 C 0 1 N N N N N N -21.243 -21.116 34.504 2.987 -0.116 -0.588 C9 PHQ 3
K36 O10 O10 O 0 1 N N N N N N -21.103 -19.899 34.360 2.850 0.342 -1.705 O10 PHQ 4
K36 C1 C1 C 0 1 Y N N N N N ? ? ? 6.598 0.199 -0.030 C1 PHQ 5
K36 C2 C2 C 0 1 Y N N N N N ? ? ? 7.352 -0.955 -0.137 C2 PHQ 6
K36 C3 C3 C 0 1 Y N N N N N ? ? ? 8.525 -1.083 0.582 C3 PHQ 7
K36 C4 C4 C 0 1 Y N N N N N ? ? ? 8.945 -0.058 1.409 C4 PHQ 8
K36 C5 C5 C 0 1 Y N N N N N ? ? ? 8.191 1.097 1.515 C5 PHQ 9
K36 C6 C6 C 0 1 Y N N N N N ? ? ? 7.020 1.227 0.792 C6 PHQ 10
K36 N11 N11 N 0 1 N N N N N N -20.424 -22.046 33.922 1.914 -0.570 0.090 N LEU 11
K36 C12 C12 C 0 1 N N S N N N -19.269 -21.633 33.105 0.571 -0.413 -0.473 CA LEU 12
K36 C17 C17 C 0 1 N N N N N N -19.746 -21.013 31.826 -0.433 -0.306 0.645 C LEU 13
K36 O18 O18 O 0 1 N N N N N N -20.735 -21.452 31.246 -0.112 -0.594 1.779 O LEU 14
K36 C13 C13 C 0 1 N N N N N N -18.392 -22.818 32.703 0.238 -1.627 -1.343 CB LEU 15
K36 C14 C14 C 0 1 N N N N N N -17.830 -23.560 33.906 -1.066 -1.367 -2.102 CG LEU 16
K36 C15 C15 C 0 1 N N N N N N -17.183 -24.851 33.422 -0.854 -0.232 -3.106 CD1 LEU 17
K36 C16 C16 C 0 1 N N N N N N -16.819 -22.722 34.661 -1.483 -2.637 -2.847 CD2 LEU 18
K36 N19 N19 N 0 1 N N N N N N -19.037 -19.927 31.324 -1.688 0.111 0.386 N19 04F 19
K36 C20 C20 C 0 1 N N S N N N -19.446 -19.211 30.116 -2.625 0.345 1.488 C20 04F 20
K36 C21 C21 C 0 1 N N S N N N -18.249 -19.027 29.166 -3.299 -0.973 1.874 C21 04F 21
K36 O22 O22 O 0 1 N N N N N N -17.814 -20.286 28.645 -4.295 -0.725 2.868 O22 04F 22
K36 C24 C24 C 0 1 N N N N N N -20.019 -17.842 30.427 -3.689 1.353 1.048 C24 04F 23
K36 C25 C25 C 0 1 N N S N N N -21.212 -17.905 31.367 -3.029 2.707 0.782 C25 04F 24
K36 C26 C26 C 0 1 N N N N N N -22.415 -18.623 30.740 -4.090 3.753 0.364 C26 04F 25
K36 C27 C27 C 0 1 N N N N N N -23.628 -17.836 31.229 -4.037 3.657 -1.177 C27 04F 26
K36 N28 N28 N 0 1 N N N N N N -23.160 -16.485 31.625 -2.691 3.164 -1.492 N28 04F 27
K36 C29 C29 C 0 1 N N N N N N -21.783 -16.549 31.574 -2.104 2.621 -0.412 C29 04F 28
K36 O30 O30 O 0 1 N N N N N N -21.107 -15.543 31.697 -0.994 2.132 -0.396 O30 04F 29
K36 S1 S1 S 0 1 N Y N N N N ? ? ? -4.076 -1.706 0.409 S1 04F 30
K36 O1 O1 O 0 1 N Y N N N N ? ? ? -5.109 -0.862 -0.083 O1 04F 31
K36 O2 O2 O 0 1 N Y N N N N ? ? ? -3.090 -2.242 -0.463 O2 04F 32
K36 O3 O3 O 0 1 N Y N N N N ? ? ? -4.811 -2.928 0.940 O3 04F 33
K36 H1 H1 H 0 1 N N N N N N -24.118 -20.677 36.183 5.397 -0.230 -1.741 H1 PHQ 34
K36 H2 H2 H 0 1 N N N N N N -22.649 -20.524 37.205 5.148 1.390 -1.047 H2 PHQ 35
K36 H3 H3 H 0 1 N N N N N N ? ? ? 7.024 -1.756 -0.783 H3 PHQ 36
K36 H18 H18 H 0 1 N N N N N N ? ? ? 9.113 -1.985 0.499 H18 PHQ 37
K36 H28 H28 H 0 1 N N N N N N ? ? ? 9.861 -0.158 1.971 H28 PHQ 38
K36 H29 H29 H 0 1 N N N N N N ? ? ? 8.519 1.898 2.161 H29 PHQ 39
K36 H30 H30 H 0 1 N N N N N N ? ? ? 6.432 2.129 0.875 H30 PHQ 40
K36 H4 H4 H 0 1 N N N N N N -20.612 -23.019 34.053 2.032 -1.002 0.951 H LEU 41
K36 H5 H5 H 0 1 N N N N N N -18.659 -20.906 33.661 0.536 0.491 -1.081 HA LEU 42
K36 H6 H6 H 0 1 N N N N N N -18.996 -23.518 32.107 1.045 -1.796 -2.056 HB2 LEU 43
K36 H7 H7 H 0 1 N N N N N N -17.554 -22.447 32.094 0.121 -2.506 -0.711 HB3 LEU 44
K36 H8 H8 H 0 1 N N N N N N -18.658 -23.813 34.584 -1.847 -1.087 -1.396 HG LEU 45
K36 H9 H9 H 0 1 N N N N N N -16.771 -25.400 34.282 -1.802 0.007 -3.588 HD11 LEU 46
K36 H10 H10 H 0 1 N N N N N N -17.938 -25.472 32.918 -0.480 0.649 -2.585 HD12 LEU 47
K36 H11 H11 H 0 1 N N N N N N -16.373 -24.613 32.717 -0.131 -0.544 -3.859 HD13 LEU 48
K36 H12 H12 H 0 1 N N N N N N -16.438 -23.293 35.521 -1.633 -3.445 -2.132 HD21 LEU 49
K36 H13 H13 H 0 1 N N N N N N -15.984 -22.465 33.993 -2.411 -2.452 -3.388 HD22 LEU 50
K36 H14 H14 H 0 1 N N N N N N -17.301 -21.800 35.018 -0.701 -2.917 -3.553 HD23 LEU 51
K36 H15 H15 H 0 1 N N N N N N -18.216 -19.624 31.808 -1.972 0.255 -0.530 H15 04F 52
K36 H16 H16 H 0 1 N N N N N N -20.213 -19.798 29.591 -2.083 0.742 2.347 H16 04F 53
K36 H17 H17 H 0 1 N N N N N N -17.442 -18.754 29.862 -2.552 -1.660 2.272 H17 04F 54
K36 H19 H19 H 0 1 N N N N N N -17.076 -20.150 28.062 -4.993 -0.120 2.583 H19 04F 55
K36 H20 H20 H 0 1 N N N N N N -19.234 -17.230 30.895 -4.170 0.998 0.137 H20 04F 56
K36 H21 H21 H 0 1 N N N N N N -20.338 -17.372 29.485 -4.435 1.460 1.835 H21 04F 57
K36 H22 H22 H 0 1 N N N N N N -20.934 -18.374 32.323 -2.484 3.045 1.663 H22 04F 58
K36 H23 H23 H 0 1 N N N N N N -22.466 -19.667 31.082 -5.076 3.478 0.738 H23 04F 59
K36 H24 H24 H 0 1 N N N N N N -22.353 -18.599 29.642 -3.809 4.750 0.703 H24 04F 60
K36 H25 H25 H 0 1 N N N N N N -24.371 -17.753 30.422 -4.790 2.955 -1.537 H25 04F 61
K36 H26 H26 H 0 1 N N N N N N -24.080 -18.344 32.093 -4.193 4.640 -1.621 H26 04F 62
K36 H27 H27 H 0 1 N N N N N N -23.722 -15.697 31.875 -2.278 3.222 -2.368 H27 04F 63
K36 H31 H31 H 0 1 N Y N N N N ? ? ? -5.282 -3.430 0.261 H31 04F 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K36 O22 C21 SING N N 1
K36 C21 C20 SING N N 2
K36 C20 C24 SING N N 3
K36 C20 N19 SING N N 4
K36 C24 C25 SING N N 5
K36 C26 C27 SING N N 6
K36 C26 C25 SING N N 7
K36 C27 N28 SING N N 8
K36 O18 C17 DOUB N N 9
K36 N19 C17 SING N N 10
K36 C25 C29 SING N N 11
K36 C29 N28 SING N N 12
K36 C29 O30 DOUB N N 13
K36 C17 C12 SING N N 14
K36 C13 C12 SING N N 15
K36 C13 C14 SING N N 16
K36 C12 N11 SING N N 17
K36 C15 C14 SING N N 18
K36 C14 C16 SING N N 19
K36 N11 C9 SING N N 20
K36 O10 C9 DOUB N N 21
K36 C9 O8 SING N N 22
K36 O8 C7 SING N N 23
K36 C7 H1 SING N N 24
K36 C7 H2 SING N N 25
K36 N11 H4 SING N N 26
K36 C12 H5 SING N N 27
K36 C13 H6 SING N N 28
K36 C13 H7 SING N N 29
K36 C14 H8 SING N N 30
K36 C15 H9 SING N N 31
K36 C15 H10 SING N N 32
K36 C15 H11 SING N N 33
K36 C16 H12 SING N N 34
K36 C16 H13 SING N N 35
K36 C16 H14 SING N N 36
K36 N19 H15 SING N N 37
K36 C20 H16 SING N N 38
K36 C21 H17 SING N N 39
K36 O22 H19 SING N N 40
K36 C24 H20 SING N N 41
K36 C24 H21 SING N N 42
K36 C25 H22 SING N N 43
K36 C26 H23 SING N N 44
K36 C26 H24 SING N N 45
K36 C27 H25 SING N N 46
K36 C27 H26 SING N N 47
K36 N28 H27 SING N N 48
K36 C7 C1 SING N N 49
K36 C1 C2 SING Y N 50
K36 C2 C3 DOUB Y N 51
K36 C3 C4 SING Y N 52
K36 C4 C5 DOUB Y N 53
K36 C5 C6 SING Y N 54
K36 C6 C1 DOUB Y N 55
K36 C21 S1 SING N N 56
K36 S1 O1 DOUB N N 57
K36 S1 O2 DOUB N N 58
K36 S1 O3 SING N N 59
K36 C2 H3 SING N N 60
K36 C3 H18 SING N N 61
K36 C4 H28 SING N N 62
K36 C5 H29 SING N N 63
K36 C6 H30 SING N N 64
K36 O3 H31 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K36 SMILES ACDLabs 12.01 'O=C(OCc1ccccc1)NC(C(=O)NC(CC2C(=O)NCC2)C(O)S(=O)(=O)O)CC(C)C'
K36 InChI InChI 1.03 'InChI=1S/C21H31N3O8S/c1-13(2)10-16(24-21(28)32-12-14-6-4-3-5-7-14)19(26)23-17(20(27)33(29,30)31)11-15-8-9-22-18(15)25/h3-7,13,15-17,20,27H,8-12H2,1-2H3,(H,22,25)(H,23,26)(H,24,28)(H,29,30,31)/t15-,16-,17-,20?/m0/s1'
K36 InChIKey InChI 1.03 BSPZFJDYQHDZNR-HTCLRFROSA-N
K36 SMILES_CANONICAL CACTVS 3.370 'CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O'
K36 SMILES CACTVS 3.370 'CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O'
K36 SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCc2ccccc2'
K36 SMILES 'OpenEye OEToolkits' 1.7.6 'CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K36 'SYSTEMATIC NAME' ACDLabs 12.01 '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid'
K36 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '(1S,2S)-2-[[(2S)-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K36 'Create component' 2011-11-22 RCSB
K36 'Modify formula' 2012-01-06 RCSB
K36 'Other modification' 2012-01-09 RCSB
K36 'Modify subcomponent list' 2012-06-20 RCSB
K36 'Modify component comp_id' 2012-06-21 RCSB
K36 'Initial release' 2012-08-31 RCSB
K36 'Modify synonyms' 2020-05-11 RCSB
K36 'Modify synonyms' 2020-05-12 RCSB
K36 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id K36
_pdbx_chem_comp_synonyms.name GC376
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id K36
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id K36
_pdbe_chem_comp_synonyms.name GC376
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
K36 C7 C 4.299 -2.827 1
K36 O8 O 5.598 -2.077 2
K36 C9 C 5.598 -0.577 3
K36 O10 O 4.299 0.173 4
K36 C1 C 4.299 -4.327 5
K36 C2 C 3.000 -5.077 6
K36 C3 C 3.000 -6.577 7
K36 C4 C 4.299 -7.327 8
K36 C5 C 5.598 -6.577 9
K36 C6 C 5.598 -5.077 10
K36 N11 N 6.897 0.173 11
K36 C12 C 6.897 1.673 12
K36 C17 C 8.196 2.423 13
K36 O18 O 8.196 3.923 14
K36 C13 C 5.598 2.423 15
K36 C14 C 5.598 3.923 16
K36 C15 C 4.299 4.673 17
K36 C16 C 6.897 4.673 18
K36 N19 N 9.495 1.673 19
K36 C20 C 10.794 2.423 20
K36 C21 C 12.093 1.673 21
K36 O22 O 13.392 2.423 22
K36 C24 C 10.794 3.923 23
K36 C25 C 12.093 4.673 24
K36 C26 C 13.463 4.063 25
K36 C27 C 14.467 5.178 26
K36 N28 N 13.717 6.477 27
K36 C29 C 12.250 6.165 28
K36 O30 O 11.135 7.169 29
K36 S1 S 12.093 0.173 30
K36 O1 O 12.093 -1.327 31
K36 O2 O 13.593 0.173 32
K36 O3 O 10.593 0.173 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
K36 C21 O22 SINGLE BEGINWEDGE 1
K36 C21 C20 SINGLE NONE 2
K36 C20 C24 SINGLE BEGINWEDGE 3
K36 C20 N19 SINGLE NONE 4
K36 C25 C24 SINGLE BEGINWEDGE 5
K36 C26 C27 SINGLE NONE 6
K36 C26 C25 SINGLE NONE 7
K36 C27 N28 SINGLE NONE 8
K36 O18 C17 DOUBLE NONE 9
K36 N19 C17 SINGLE NONE 10
K36 C25 C29 SINGLE NONE 11
K36 C29 N28 SINGLE NONE 12
K36 C29 O30 DOUBLE NONE 13
K36 C17 C12 SINGLE NONE 14
K36 C12 C13 SINGLE BEGINWEDGE 15
K36 C13 C14 SINGLE NONE 16
K36 C12 N11 SINGLE NONE 17
K36 C15 C14 SINGLE NONE 18
K36 C14 C16 SINGLE NONE 19
K36 N11 C9 SINGLE NONE 20
K36 O10 C9 DOUBLE NONE 21
K36 C9 O8 SINGLE NONE 22
K36 O8 C7 SINGLE NONE 23
K36 C7 C1 SINGLE NONE 24
K36 C1 C2 DOUBLE NONE 25
K36 C2 C3 SINGLE NONE 26
K36 C3 C4 DOUBLE NONE 27
K36 C4 C5 SINGLE NONE 28
K36 C5 C6 DOUBLE NONE 29
K36 C6 C1 SINGLE NONE 30
K36 C21 S1 SINGLE NONE 31
K36 S1 O1 DOUBLE NONE 32
K36 S1 O2 DOUBLE NONE 33
K36 S1 O3 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
K36 MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCc1ccccc1)NCC[C@@H]1CCNC1=O' InChI=1S/C16H21N3O4/c20-14(17-8-6-13-7-9-18-15(13)21)10-19-16(22)23-11-12-4-2-1-3-5-12/h1-5,13H,6-11H2,(H,17,20)(H,18,21)(H,19,22)/t13-/m1/s1 PJJOURUUIARXFI-CYBMUJFWSA-N
K36 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
K36 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
K36 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
K36 C7 S1 1
K36 O8 S1 1
K36 C9 S1 1
K36 O10 S1 1
K36 C1 S1 1
K36 C2 S1 1
K36 C3 S1 1
K36 C4 S1 1
K36 C5 S1 1
K36 C6 S1 1
K36 N11 S1 1
K36 C12 S1 1
K36 C17 S1 1
K36 O18 S1 1
K36 N19 S1 1
K36 C20 S1 1
K36 C24 S1 1
K36 C25 S1 1
K36 C26 S1 1
K36 C27 S1 1
K36 N28 S1 1
K36 C29 S1 1
K36 O30 S1 1
K36 N19 F1 1
K36 C17 F1 1
K36 O18 F1 1
K36 C12 F1 1
K36 N28 F1 2
K36 C29 F1 2
K36 O30 F1 2
K36 C25 F1 2
K36 O18 F2 1
K36 C17 F2 1
K36 C12 F2 1
K36 N11 F2 1
K36 C1 F3 1
K36 C2 F3 1
K36 C3 F3 1
K36 C4 F3 1
K36 C5 F3 1
K36 C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id K36
_pdbe_chem_comp_rdkit_properties.exactmw 485.183
_pdbe_chem_comp_rdkit_properties.amw 485.559
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.472
_pdbe_chem_comp_rdkit_properties.tpsa 171.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.490
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.960
_pdbe_chem_comp_rdkit_properties.chi0v 16.332
_pdbe_chem_comp_rdkit_properties.chi1v 9.179
_pdbe_chem_comp_rdkit_properties.chi2v 3.466
_pdbe_chem_comp_rdkit_properties.chi3v 3.466
_pdbe_chem_comp_rdkit_properties.chi4v 1.936
_pdbe_chem_comp_rdkit_properties.chi0n 46.516
_pdbe_chem_comp_rdkit_properties.chi1n 22.929
_pdbe_chem_comp_rdkit_properties.chi2n 2.819
_pdbe_chem_comp_rdkit_properties.chi3n 2.819
_pdbe_chem_comp_rdkit_properties.chi4n 1.602
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.700
_pdbe_chem_comp_rdkit_properties.kappa1 6.702
_pdbe_chem_comp_rdkit_properties.kappa2 11.957
_pdbe_chem_comp_rdkit_properties.kappa3 8.631
_pdbe_chem_comp_rdkit_properties.Phi 2.428
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
K36 UniChem BindingDb 512486
K36 UniChem PubChem 137349627
K36 UniChem 'Probes And Drugs' PD168799
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
K36 C7 3.782 -2.105 -1.765 ETKDGv3 1
K36 O8 3.407 -1.338 -0.627 ETKDGv3 2
K36 C9 2.473 -1.787 0.310 ETKDGv3 3
K36 O10 1.960 -2.935 0.204 ETKDGv3 4
K36 C1 4.652 -1.268 -2.655 ETKDGv3 5
K36 C2 5.983 -1.222 -2.469 ETKDGv3 6
K36 C3 6.824 -0.356 -3.321 ETKDGv3 7
K36 C4 6.261 0.402 -4.270 ETKDGv3 8
K36 C5 4.797 0.374 -4.466 ETKDGv3 9
K36 C6 4.033 -0.415 -3.700 ETKDGv3 10
K36 N11 2.082 -0.917 1.379 ETKDGv3 11
K36 C12 0.920 -1.199 2.228 ETKDGv3 12
K36 C17 -0.328 -1.065 1.397 ETKDGv3 13
K36 O18 -1.102 -2.055 1.286 ETKDGv3 14
K36 C13 0.920 -0.250 3.454 ETKDGv3 15
K36 C14 -0.137 -0.530 4.556 ETKDGv3 16
K36 C15 -0.112 -1.979 5.059 ETKDGv3 17
K36 C16 -1.558 -0.110 4.155 ETKDGv3 18
K36 N19 -0.613 0.160 0.704 ETKDGv3 19
K36 C20 -1.731 0.293 -0.238 ETKDGv3 20
K36 C21 -1.305 1.098 -1.495 ETKDGv3 21
K36 O22 -1.138 2.466 -1.220 ETKDGv3 22
K36 C24 -2.943 0.905 0.502 ETKDGv3 23
K36 C25 -4.276 0.784 -0.278 ETKDGv3 24
K36 C26 -4.520 1.940 -1.279 ETKDGv3 25
K36 C27 -5.900 2.547 -0.961 ETKDGv3 26
K36 N28 -6.351 1.905 0.255 ETKDGv3 27
K36 C29 -5.445 0.894 0.630 ETKDGv3 28
K36 O30 -5.653 0.130 1.610 ETKDGv3 29
K36 S1 0.171 0.422 -2.272 ETKDGv3 30
K36 O1 0.061 -1.073 -2.381 ETKDGv3 31
K36 O2 1.388 0.770 -1.463 ETKDGv3 32
K36 O3 0.338 1.081 -3.810 ETKDGv3 33
K36 H1 4.319 -3.023 -1.440 ETKDGv3 34
K36 H2 2.872 -2.417 -2.324 ETKDGv3 35
K36 H3 6.454 -1.814 -1.693 ETKDGv3 36
K36 H18 7.896 -0.333 -3.173 ETKDGv3 37
K36 H28 6.875 1.039 -4.893 ETKDGv3 38
K36 H29 4.344 0.994 -5.228 ETKDGv3 39
K36 H30 2.960 -0.427 -3.846 ETKDGv3 40
K36 H4 2.583 -0.004 1.471 ETKDGv3 41
K36 H5 1.015 -2.244 2.595 ETKDGv3 42
K36 H6 0.827 0.805 3.119 ETKDGv3 43
K36 H7 1.921 -0.327 3.933 ETKDGv3 44
K36 H8 0.145 0.113 5.420 ETKDGv3 45
K36 H9 0.927 -2.281 5.311 ETKDGv3 46
K36 H10 -0.732 -2.071 5.976 ETKDGv3 47
K36 H11 -0.519 -2.675 4.295 ETKDGv3 48
K36 H12 -1.551 0.895 3.682 ETKDGv3 49
K36 H13 -2.202 -0.060 5.059 ETKDGv3 50
K36 H14 -2.015 -0.841 3.458 ETKDGv3 51
K36 H15 -0.059 1.009 0.954 ETKDGv3 52
K36 H16 -2.024 -0.720 -0.593 ETKDGv3 53
K36 H17 -2.112 1.003 -2.249 ETKDGv3 54
K36 H19 -0.327 2.569 -0.661 ETKDGv3 55
K36 H20 -3.049 0.346 1.457 ETKDGv3 56
K36 H21 -2.741 1.961 0.785 ETKDGv3 57
K36 H22 -4.337 -0.196 -0.801 ETKDGv3 58
K36 H23 -3.750 2.736 -1.188 ETKDGv3 59
K36 H24 -4.503 1.557 -2.322 ETKDGv3 60
K36 H25 -6.619 2.333 -1.781 ETKDGv3 61
K36 H26 -5.827 3.645 -0.804 ETKDGv3 62
K36 H27 -7.257 2.104 0.735 ETKDGv3 63
K36 H31 -0.450 0.756 -4.314 ETKDGv3 64
#