data_JXO
#
_chem_comp.id JXO
_chem_comp.name 6-chloroquinoxalin-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H6 Cl N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-02
_chem_comp.pdbx_modified_date 2022-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 179.606
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JXO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5SJ5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JXO C1 C1 C 0 1 Y N N N N N 91.616 -8.154 14.981 -0.289 0.640 0.003 C1 JXO 1
JXO C2 C2 C 0 1 Y N N N N N 91.047 -9.451 14.699 -0.702 -0.715 0.001 C2 JXO 2
JXO C3 C3 C 0 1 Y N N N N N 91.208 -7.445 16.114 1.084 0.940 0.003 C3 JXO 3
JXO N4 N1 N 0 1 Y N N N N N 92.594 -7.590 14.164 -1.207 1.615 -0.001 N4 JXO 4
JXO N5 N2 N 0 1 Y N N N N N 91.413 -10.209 13.632 -2.009 -1.009 0.000 N5 JXO 5
JXO C6 C4 C 0 1 Y N N N N N 90.079 -10.016 15.558 0.268 -1.732 -0.002 C6 JXO 6
JXO C7 C5 C 0 1 Y N N N N N 90.264 -8.017 16.929 1.997 -0.071 0.000 C7 JXO 7
JXO C8 C6 C 0 1 Y N N N N N 92.937 -8.324 13.131 -2.482 1.310 -0.006 C8 JXO 8
JXO C9 C7 C 0 1 Y N N N N N 92.352 -9.663 12.843 -2.897 -0.034 0.002 C9 JXO 9
JXO C10 C8 C 0 1 Y N N N N N 89.682 -9.293 16.627 1.589 -1.405 -0.002 C10 JXO 10
JXO CL11 CL1 CL 0 0 N N N N N N 89.729 -7.247 18.395 3.691 0.305 0.000 CL11 JXO 11
JXO N12 N3 N 0 1 N N N N N N 92.768 -10.349 11.673 -4.251 -0.336 0.002 N12 JXO 12
JXO H13 H1 H 0 1 N N N N N N 91.624 -6.475 16.342 1.414 1.968 0.004 H13 JXO 13
JXO H14 H2 H 0 1 N N N N N N 89.669 -10.996 15.366 -0.034 -2.769 -0.003 H14 JXO 14
JXO H15 H3 H 0 1 N N N N N N 93.683 -7.936 12.454 -3.220 2.098 -0.009 H15 JXO 15
JXO H16 H4 H 0 1 N N N N N N 88.908 -9.685 17.270 2.331 -2.189 -0.004 H16 JXO 16
JXO H17 H5 H 0 1 N N N N N N 92.265 -11.209 11.594 -4.541 -1.261 0.000 H17 JXO 17
JXO H18 H6 H 0 1 N N N N N N 92.585 -9.781 10.871 -4.907 0.379 0.003 H18 JXO 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JXO C1 C2 DOUB Y N 1
JXO C1 C3 SING Y N 2
JXO C1 N4 SING Y N 3
JXO C2 N5 SING Y N 4
JXO C2 C6 SING Y N 5
JXO C3 C7 DOUB Y N 6
JXO N4 C8 DOUB Y N 7
JXO N5 C9 DOUB Y N 8
JXO C8 C9 SING Y N 9
JXO C6 C10 DOUB Y N 10
JXO C7 C10 SING Y N 11
JXO C7 CL11 SING N N 12
JXO C9 N12 SING N N 13
JXO C3 H13 SING N N 14
JXO C6 H14 SING N N 15
JXO C8 H15 SING N N 16
JXO C10 H16 SING N N 17
JXO N12 H17 SING N N 18
JXO N12 H18 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JXO SMILES ACDLabs 12.01 Clc1ccc2nc(N)cnc2c1
JXO InChI InChI 1.03 InChI=1S/C8H6ClN3/c9-5-1-2-6-7(3-5)11-4-8(10)12-6/h1-4H,(H2,10,12)
JXO InChIKey InChI 1.03 OBVIIEVSLRCJSF-UHFFFAOYSA-N
JXO SMILES_CANONICAL CACTVS 3.385 Nc1cnc2cc(Cl)ccc2n1
JXO SMILES CACTVS 3.385 Nc1cnc2cc(Cl)ccc2n1
JXO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1Cl)ncc(n2)N
JXO SMILES "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1Cl)ncc(n2)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JXO "SYSTEMATIC NAME" ACDLabs 12.01 6-chloroquinoxalin-2-amine
JXO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 6-chloranylquinoxalin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JXO 'Create component' 2022-02-02 RCSB
JXO 'Initial release' 2022-10-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JXO C1 C 6.996 1.189 1
JXO C2 C 6.996 -0.311 2
JXO C3 C 5.655 1.991 3
JXO N4 N 8.295 1.939 4
JXO N5 N 8.295 -1.061 5
JXO C6 C 5.655 -1.113 6
JXO C7 C 4.296 1.220 7
JXO C8 C 9.594 1.189 8
JXO C9 C 9.594 -0.311 9
JXO C10 C 4.296 -0.342 10
JXO CL11 Cl 3.000 1.975 11
JXO N12 N 10.893 -1.061 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JXO C1 C2 SINGLE NONE 1
JXO C1 C3 DOUBLE NONE 2
JXO C1 N4 SINGLE NONE 3
JXO C2 N5 SINGLE NONE 4
JXO C2 C6 DOUBLE NONE 5
JXO C3 C7 SINGLE NONE 6
JXO N4 C8 DOUBLE NONE 7
JXO N5 C9 DOUBLE NONE 8
JXO C8 C9 SINGLE NONE 9
JXO C6 C10 SINGLE NONE 10
JXO C7 C10 DOUBLE NONE 11
JXO C7 CL11 SINGLE NONE 12
JXO C9 N12 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JXO MurckoScaffold S1 scaffold c1ccc2nccnc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)9-5-6-10-8/h1-6H XSCHRSMBECNVNS-UHFFFAOYSA-N
JXO phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JXO pyrazine F2 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
JXO quinoxaline F3 fragment c1ccc2nccnc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)9-5-6-10-8/h1-6H XSCHRSMBECNVNS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JXO C1 S1 1
JXO C2 S1 1
JXO C3 S1 1
JXO N4 S1 1
JXO N5 S1 1
JXO C6 S1 1
JXO C7 S1 1
JXO C8 S1 1
JXO C9 S1 1
JXO C10 S1 1
JXO C1 F1 1
JXO C2 F1 1
JXO C6 F1 1
JXO C10 F1 1
JXO C7 F1 1
JXO C3 F1 1
JXO C1 F2 1
JXO C2 F2 1
JXO N5 F2 1
JXO C9 F2 1
JXO C8 F2 1
JXO N4 F2 1
JXO C7 F3 1
JXO C10 F3 1
JXO C6 F3 1
JXO C2 F3 1
JXO C1 F3 1
JXO C3 F3 1
JXO N4 F3 1
JXO C8 F3 1
JXO C9 F3 1
JXO N5 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JXO
_pdbe_chem_comp_rdkit_properties.exactmw 179.025
_pdbe_chem_comp_rdkit_properties.amw 179.610
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.741
_pdbe_chem_comp_rdkit_properties.tpsa 51.800
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.056
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.930
_pdbe_chem_comp_rdkit_properties.chi0v 6.476
_pdbe_chem_comp_rdkit_properties.chi1v 3.435
_pdbe_chem_comp_rdkit_properties.chi2v 1.417
_pdbe_chem_comp_rdkit_properties.chi3v 1.417
_pdbe_chem_comp_rdkit_properties.chi4v 0.903
_pdbe_chem_comp_rdkit_properties.chi0n 11.720
_pdbe_chem_comp_rdkit_properties.chi1n 5.951
_pdbe_chem_comp_rdkit_properties.chi2n 1.229
_pdbe_chem_comp_rdkit_properties.chi3n 1.229
_pdbe_chem_comp_rdkit_properties.chi4n 0.766
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.350
_pdbe_chem_comp_rdkit_properties.kappa1 3.184
_pdbe_chem_comp_rdkit_properties.kappa2 2.605
_pdbe_chem_comp_rdkit_properties.kappa3 1.187
_pdbe_chem_comp_rdkit_properties.Phi 0.691
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JXO UniChem SureChEMBL SCHEMBL4725394
JXO UniChem PubChem 13532735
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JXO C1 0.622 -0.741 -0.328 ETKDGv3 1
JXO C2 0.087 0.624 -0.156 ETKDGv3 2
JXO C3 1.943 -0.957 -0.312 ETKDGv3 3
JXO N4 -0.310 -1.812 -0.510 ETKDGv3 4
JXO N5 -1.333 0.801 -0.181 ETKDGv3 5
JXO C6 0.919 1.659 0.017 ETKDGv3 6
JXO C7 2.868 0.184 -0.120 ETKDGv3 7
JXO C8 -1.593 -1.589 -0.523 ETKDGv3 8
JXO C9 -2.136 -0.213 -0.350 ETKDGv3 9
JXO C10 2.380 1.426 0.036 ETKDGv3 10
JXO CL11 4.600 -0.093 -0.098 ETKDGv3 11
JXO N12 -3.547 0.001 -0.370 ETKDGv3 12
JXO H13 2.336 -1.958 -0.437 ETKDGv3 13
JXO H14 0.531 2.662 0.143 ETKDGv3 14
JXO H15 -2.273 -2.419 -0.663 ETKDGv3 15
JXO H16 3.051 2.264 0.176 ETKDGv3 16
JXO H17 -3.938 0.962 -0.250 ETKDGv3 17
JXO H18 -4.205 -0.798 -0.504 ETKDGv3 18
#