data_JWK
#
_chem_comp.id JWK
_chem_comp.name 2-[8-azanyl-2-(2-fluoranylpyridin-4-yl)-1,7-naphthyridin-5-yl]propan-2-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H15 F N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-05
_chem_comp.pdbx_modified_date 2019-11-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 298.315
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JWK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RA7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JWK C1 C1 C 0 1 N N N N N N 9.281 6.995 7.008 -3.779 -1.396 -0.008 C1 JWK 1
JWK C2 C2 C 0 1 N N N N N N 9.060 7.139 8.513 -3.421 -2.203 -1.258 C2 JWK 2
JWK C3 C3 C 0 1 Y N N N N N 10.450 7.857 6.506 -3.003 -0.103 -0.006 C3 JWK 3
JWK C7 C4 C 0 1 Y N N N N N 10.559 12.036 6.684 1.124 0.038 -0.001 C7 JWK 4
JWK C8 C5 C 0 1 Y N N N N N 9.362 11.400 7.019 0.505 -1.221 -0.003 C8 JWK 5
JWK C9 C6 C 0 1 Y N N N N N 9.263 10.054 6.901 -0.857 -1.309 -0.005 C9 JWK 6
JWK C10 C7 C 0 1 Y N N N N N 10.394 9.284 6.552 -1.597 -0.113 -0.004 C10 JWK 7
JWK C11 C8 C 0 1 Y N N N N N 10.667 13.511 6.684 2.605 0.118 -0.000 C11 JWK 8
JWK C12 C9 C 0 1 Y N N N N N 9.691 14.316 7.274 3.258 1.355 0.002 C12 JWK 9
JWK C13 C10 C 0 1 Y N N N N N 9.827 15.688 7.219 4.637 1.385 0.002 C13 JWK 10
JWK C14 C11 C 0 1 Y N N N N N 11.746 15.520 6.100 4.764 -0.921 0.005 C14 JWK 11
JWK C15 C12 C 0 1 Y N N N N N 11.730 14.141 6.036 3.385 -1.041 0.004 C15 JWK 12
JWK F F1 F 0 1 N N N N N N 12.769 16.153 5.482 5.530 -2.033 0.003 F JWK 13
JWK N3 N1 N 0 1 Y N N N N N 10.851 16.309 6.620 5.339 0.268 0.001 N3 JWK 14
JWK N2 N2 N 0 1 Y N N N N N 11.645 11.366 6.306 0.419 1.154 -0.001 N2 JWK 15
JWK O O1 O 0 1 N N N N N N 8.061 7.433 6.383 -5.179 -1.111 -0.010 O JWK 16
JWK C C13 C 0 1 N N N N N N 9.474 5.521 6.663 -3.425 -2.205 1.241 C JWK 17
JWK C6 C14 C 0 1 Y N N N N N 11.583 10.009 6.240 -0.912 1.128 -0.002 C6 JWK 18
JWK C5 C15 C 0 1 Y N N N N N 12.757 9.272 5.943 -1.681 2.317 -0.002 C5 JWK 19
JWK N1 N3 N 0 1 N N N N N N 13.900 9.972 5.761 -1.052 3.551 -0.000 N1 JWK 20
JWK N N4 N 0 1 Y N N N N N 12.760 7.946 5.845 -2.997 2.246 -0.004 N JWK 21
JWK C4 C16 C 0 1 Y N N N N N 11.640 7.258 6.132 -3.653 1.093 -0.011 C4 JWK 22
JWK H1 H1 H 0 1 N N N N N N 9.965 6.817 9.049 -2.338 -2.317 -1.319 H1 JWK 23
JWK H2 H2 H 0 1 N N N N N N 8.846 8.191 8.753 -3.888 -3.186 -1.201 H2 JWK 24
JWK H3 H3 H 0 1 N N N N N N 8.209 6.513 8.820 -3.781 -1.680 -2.144 H3 JWK 25
JWK H4 H4 H 0 1 N N N N N N 8.520 11.978 7.370 1.105 -2.119 -0.004 H4 JWK 26
JWK H5 H5 H 0 1 N N N N N N 8.314 9.568 7.075 -1.352 -2.268 -0.007 H5 JWK 27
JWK H6 H6 H 0 1 N N N N N N 8.840 13.870 7.767 2.690 2.273 0.002 H6 JWK 28
JWK H7 H7 H 0 1 N N N N N N 9.065 16.295 7.685 5.149 2.336 0.003 H7 JWK 29
JWK H8 H8 H 0 1 N N N N N N 12.495 13.583 5.516 2.920 -2.015 0.008 H8 JWK 30
JWK H9 H9 H 0 1 N N N N N N 7.337 6.901 6.692 -5.478 -0.601 0.755 H9 JWK 31
JWK H10 H10 H 0 1 N N N N N N 10.401 5.154 7.127 -2.343 -2.325 1.301 H10 JWK 32
JWK H11 H11 H 0 1 N N N N N N 8.620 4.941 7.042 -3.783 -1.681 2.127 H11 JWK 33
JWK H12 H12 H 0 1 N N N N N N 9.540 5.406 5.571 -3.896 -3.186 1.183 H12 JWK 34
JWK H13 H13 H 0 1 N N N N N N 14.650 9.341 5.562 -0.083 3.601 0.001 H13 JWK 35
JWK H14 H14 H 0 1 N N N N N N 13.785 10.605 4.996 -1.580 4.364 -0.000 H14 JWK 36
JWK H15 H15 H 0 1 N N N N N N 11.671 6.180 6.067 -4.733 1.104 -0.012 H15 JWK 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JWK F C14 SING N N 1
JWK N1 C5 SING N N 2
JWK N C5 DOUB Y N 3
JWK N C4 SING Y N 4
JWK C5 C6 SING Y N 5
JWK C15 C14 DOUB Y N 6
JWK C15 C11 SING Y N 7
JWK C14 N3 SING Y N 8
JWK C4 C3 DOUB Y N 9
JWK C6 N2 DOUB Y N 10
JWK C6 C10 SING Y N 11
JWK N2 C7 SING Y N 12
JWK O C1 SING N N 13
JWK C3 C10 SING Y N 14
JWK C3 C1 SING N N 15
JWK C10 C9 DOUB Y N 16
JWK N3 C13 DOUB Y N 17
JWK C C1 SING N N 18
JWK C11 C7 SING N N 19
JWK C11 C12 DOUB Y N 20
JWK C7 C8 DOUB Y N 21
JWK C9 C8 SING Y N 22
JWK C1 C2 SING N N 23
JWK C13 C12 SING Y N 24
JWK C2 H1 SING N N 25
JWK C2 H2 SING N N 26
JWK C2 H3 SING N N 27
JWK C8 H4 SING N N 28
JWK C9 H5 SING N N 29
JWK C12 H6 SING N N 30
JWK C13 H7 SING N N 31
JWK C15 H8 SING N N 32
JWK O H9 SING N N 33
JWK C H10 SING N N 34
JWK C H11 SING N N 35
JWK C H12 SING N N 36
JWK N1 H13 SING N N 37
JWK N1 H14 SING N N 38
JWK C4 H15 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JWK InChI InChI 1.03 InChI=1S/C16H15FN4O/c1-16(2,22)11-8-20-15(18)14-10(11)3-4-12(21-14)9-5-6-19-13(17)7-9/h3-8,22H,1-2H3,(H2,18,20)
JWK InChIKey InChI 1.03 XVUSMHCLFMFBQR-UHFFFAOYSA-N
JWK SMILES_CANONICAL CACTVS 3.385 CC(C)(O)c1cnc(N)c2nc(ccc12)c3ccnc(F)c3
JWK SMILES CACTVS 3.385 CC(C)(O)c1cnc(N)c2nc(ccc12)c3ccnc(F)c3
JWK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)(c1cnc(c2c1ccc(n2)c3ccnc(c3)F)N)O
JWK SMILES "OpenEye OEToolkits" 2.0.7 CC(C)(c1cnc(c2c1ccc(n2)c3ccnc(c3)F)N)O
#
_pdbx_chem_comp_identifier.comp_id JWK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-[8-azanyl-2-(2-fluoranylpyridin-4-yl)-1,7-naphthyridin-5-yl]propan-2-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JWK 'Create component' 2019-04-05 RCSB
JWK 'Initial release' 2019-11-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JWK C1 C 4.500 3.163 1
JWK C2 C 6.000 3.163 2
JWK C3 C 4.500 1.663 3
JWK C7 C 8.499 -0.618 4
JWK C8 C 8.499 0.944 5
JWK C9 C 7.140 1.715 6
JWK C10 C 5.799 0.913 7
JWK C11 C 9.795 -1.373 8
JWK C12 C 11.097 -0.628 9
JWK C13 C 12.393 -1.383 10
JWK C14 C 11.086 -3.628 11
JWK C15 C 9.790 -2.873 12
JWK F F 11.080 -5.128 13
JWK N3 N 12.387 -2.883 14
JWK N2 N 7.140 -1.389 15
JWK O O 4.500 4.663 16
JWK C C 3.000 3.163 17
JWK C6 C 5.799 -0.587 18
JWK C5 C 4.500 -1.337 19
JWK N1 N 4.500 -2.837 20
JWK N N 3.201 -0.587 21
JWK C4 C 3.201 0.913 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JWK F C14 SINGLE NONE 1
JWK N1 C5 SINGLE NONE 2
JWK N C5 DOUBLE NONE 3
JWK N C4 SINGLE NONE 4
JWK C5 C6 SINGLE NONE 5
JWK C15 C14 DOUBLE NONE 6
JWK C15 C11 SINGLE NONE 7
JWK C14 N3 SINGLE NONE 8
JWK C4 C3 DOUBLE NONE 9
JWK C6 N2 SINGLE NONE 10
JWK C6 C10 DOUBLE NONE 11
JWK N2 C7 DOUBLE NONE 12
JWK O C1 SINGLE NONE 13
JWK C3 C10 SINGLE NONE 14
JWK C3 C1 SINGLE NONE 15
JWK C10 C9 SINGLE NONE 16
JWK N3 C13 DOUBLE NONE 17
JWK C C1 SINGLE NONE 18
JWK C11 C7 SINGLE NONE 19
JWK C11 C12 DOUBLE NONE 20
JWK C7 C8 SINGLE NONE 21
JWK C9 C8 DOUBLE NONE 22
JWK C1 C2 SINGLE NONE 23
JWK C13 C12 SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JWK MurckoScaffold S1 scaffold c1cc(-c2ccc3ccncc3n2)ccn1 InChI=1S/C13H9N3/c1-2-12(11-3-6-14-7-4-11)16-13-9-15-8-5-10(1)13/h1-9H CYXFLHYJKJSGNH-UHFFFAOYSA-N
JWK pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JWK C3 S1 1
JWK C7 S1 1
JWK C8 S1 1
JWK C9 S1 1
JWK C10 S1 1
JWK C11 S1 1
JWK C12 S1 1
JWK C13 S1 1
JWK C14 S1 1
JWK C15 S1 1
JWK N3 S1 1
JWK N2 S1 1
JWK C6 S1 1
JWK C5 S1 1
JWK N S1 1
JWK C4 S1 1
JWK C7 F1 1
JWK C8 F1 1
JWK C9 F1 1
JWK C10 F1 1
JWK C6 F1 1
JWK N2 F1 1
JWK C13 F1 2
JWK C12 F1 2
JWK C11 F1 2
JWK C15 F1 2
JWK C14 F1 2
JWK N3 F1 2
JWK C5 F1 3
JWK C6 F1 3
JWK C10 F1 3
JWK C3 F1 3
JWK C4 F1 3
JWK N F1 3
#
_pdbe_chem_comp_rdkit_properties.comp_id JWK
_pdbe_chem_comp_rdkit_properties.exactmw 298.123
_pdbe_chem_comp_rdkit_properties.amw 298.321
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.188
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 147.501
_pdbe_chem_comp_rdkit_properties.tpsa 84.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.397
_pdbe_chem_comp_rdkit_properties.CrippenMR 77.766
_pdbe_chem_comp_rdkit_properties.chi0v 10.575
_pdbe_chem_comp_rdkit_properties.chi1v 5.708
_pdbe_chem_comp_rdkit_properties.chi2v 2.654
_pdbe_chem_comp_rdkit_properties.chi3v 2.654
_pdbe_chem_comp_rdkit_properties.chi4v 1.724
_pdbe_chem_comp_rdkit_properties.chi0n 25.575
_pdbe_chem_comp_rdkit_properties.chi1n 13.011
_pdbe_chem_comp_rdkit_properties.chi2n 2.654
_pdbe_chem_comp_rdkit_properties.chi3n 2.654
_pdbe_chem_comp_rdkit_properties.chi4n 1.724
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.600
_pdbe_chem_comp_rdkit_properties.kappa1 4.957
_pdbe_chem_comp_rdkit_properties.kappa2 4.994
_pdbe_chem_comp_rdkit_properties.kappa3 2.485
_pdbe_chem_comp_rdkit_properties.Phi 1.125
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JWK UniChem PubChem 139592531
JWK UniChem BindingDb 50535494
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JWK C1 -3.509 -0.581 0.457 ETKDGv3 1
JWK C2 -3.769 -1.622 -0.643 ETKDGv3 2
JWK C3 -2.455 0.439 -0.038 ETKDGv3 3
JWK C7 1.847 -0.173 -0.080 ETKDGv3 4
JWK C8 0.962 -1.335 0.158 ETKDGv3 5
JWK C9 -0.364 -1.171 0.152 ETKDGv3 6
JWK C10 -0.966 0.173 -0.067 ETKDGv3 7
JWK C11 3.327 -0.297 -0.075 ETKDGv3 8
JWK C12 3.955 -1.265 0.620 ETKDGv3 9
JWK C13 5.429 -1.339 0.605 ETKDGv3 10
JWK C14 5.486 0.584 -0.813 ETKDGv3 11
JWK C15 4.151 0.685 -0.827 ETKDGv3 12
JWK F 6.242 1.473 -1.502 ETKDGv3 13
JWK N3 6.122 -0.468 -0.069 ETKDGv3 14
JWK N2 1.306 0.980 -0.344 ETKDGv3 15
JWK O -4.744 0.061 0.698 ETKDGv3 16
JWK C -3.091 -1.277 1.779 ETKDGv3 17
JWK C6 -0.118 1.187 -0.366 ETKDGv3 18
JWK C5 -0.653 2.505 -0.760 ETKDGv3 19
JWK N1 0.222 3.581 -1.101 ETKDGv3 20
JWK N -1.937 2.679 -0.832 ETKDGv3 21
JWK C4 -2.871 1.646 -0.491 ETKDGv3 22
JWK H1 -4.164 -1.121 -1.553 ETKDGv3 23
JWK H2 -4.526 -2.360 -0.300 ETKDGv3 24
JWK H3 -2.850 -2.170 -0.927 ETKDGv3 25
JWK H4 1.369 -2.330 0.277 ETKDGv3 26
JWK H5 -0.965 -2.054 0.242 ETKDGv3 27
JWK H6 3.410 -1.982 1.219 ETKDGv3 28
JWK H7 5.937 -2.117 1.159 ETKDGv3 29
JWK H8 3.681 1.478 -1.395 ETKDGv3 30
JWK H9 -4.615 0.703 1.447 ETKDGv3 31
JWK H10 -2.458 -0.606 2.398 ETKDGv3 32
JWK H11 -2.568 -2.239 1.621 ETKDGv3 33
JWK H12 -3.992 -1.532 2.379 ETKDGv3 34
JWK H13 -0.168 4.505 -1.393 ETKDGv3 35
JWK H14 1.260 3.470 -1.064 ETKDGv3 36
JWK H15 -3.921 1.890 -0.570 ETKDGv3 37
#