data_JTK
#
_chem_comp.id JTK
_chem_comp.name "(2~{R})-2-[4-[3,5-bis(chloranyl)phenyl]-3-fluoranyl-phenyl]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H11 Cl2 F O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-26
_chem_comp.pdbx_modified_date 2019-09-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 313.151
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JTK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6R68
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JTK OAS O1 O 0 1 N N N N N N 0.935 2.500 65.924 -6.451 -0.738 0.316 OAS JTK 1
JTK CAR C1 C 0 1 N N N N N N 0.001 1.659 65.856 -5.112 -0.653 0.256 CAR JTK 2
JTK OAT O2 O 0 1 N N N N N N -0.846 1.575 64.927 -4.434 -1.622 0.502 OAT JTK 3
JTK CAP C2 C 0 1 N N R N N N -0.038 0.498 66.861 -4.456 0.652 -0.116 CAP JTK 4
JTK CAQ C3 C 0 1 N N N N N N -0.966 -0.548 66.212 -4.916 1.073 -1.514 CAQ JTK 5
JTK CAN C4 C 0 1 Y N N N N N -0.304 0.711 68.309 -2.959 0.481 -0.110 CAN JTK 6
JTK CAO C5 C 0 1 Y N N N N N 0.321 -0.246 69.075 -2.182 1.250 0.736 CAO JTK 7
JTK CAK C6 C 0 1 Y N N N N N 0.246 -0.318 70.459 -0.808 1.098 0.746 CAK JTK 8
JTK FAL F1 F 0 1 N N N N N N 0.847 -1.255 71.023 -0.049 1.849 1.573 FAL JTK 9
JTK CAM C7 C 0 1 Y N N N N N -1.032 1.655 69.086 -2.368 -0.449 -0.947 CAM JTK 10
JTK CAI C8 C 0 1 Y N N N N N -1.081 1.618 70.521 -0.998 -0.610 -0.946 CAI JTK 11
JTK CAJ C9 C 0 1 Y N N N N N -0.467 0.574 71.221 -0.207 0.165 -0.101 CAJ JTK 12
JTK CAG C10 C 0 1 Y N N N N N -0.354 0.367 72.615 1.267 -0.004 -0.096 CAG JTK 13
JTK CAH C11 C 0 1 Y N N N N N 0.056 1.416 73.460 2.099 1.109 -0.199 CAH JTK 14
JTK CAD C12 C 0 1 Y N N N N N 0.240 1.189 74.813 3.470 0.946 -0.194 CAD JTK 15
JTK CL1 CL1 CL 0 0 N N N N N N 0.775 2.534 75.800 4.508 2.331 -0.322 CL1 JTK 16
JTK CAC C13 C 0 1 Y N N N N N 0.036 -0.035 75.397 4.019 -0.321 -0.086 CAC JTK 17
JTK CAB C14 C 0 1 Y N N N N N -0.311 -1.089 74.561 3.197 -1.429 0.016 CAB JTK 18
JTK CL2 CL2 CL 0 0 N N N N N N -0.567 -2.658 75.274 3.892 -3.014 0.151 CL2 JTK 19
JTK CAF C15 C 0 1 Y N N N N N -0.532 -0.898 73.188 1.824 -1.276 0.018 CAF JTK 20
JTK H1 H1 H 0 1 N N N N N N 0.906 3.068 65.163 -6.825 -1.596 0.559 H1 JTK 21
JTK H2 H2 H 0 1 N N N N N N 0.966 0.050 66.813 -4.738 1.419 0.605 H2 JTK 22
JTK H3 H3 H 0 1 N N N N N N -1.051 -1.423 66.873 -4.635 0.306 -2.235 H3 JTK 23
JTK H4 H4 H 0 1 N N N N N N -1.962 -0.108 66.056 -5.999 1.196 -1.518 H4 JTK 24
JTK H5 H5 H 0 1 N N N N N N -0.547 -0.859 65.244 -4.441 2.016 -1.783 H5 JTK 25
JTK H6 H6 H 0 1 N N N N N N 0.911 -0.993 68.564 -2.649 1.972 1.390 H6 JTK 26
JTK H7 H7 H 0 1 N N N N N N -1.573 2.436 68.573 -2.981 -1.049 -1.602 H7 JTK 27
JTK H8 H8 H 0 1 N N N N N N -1.594 2.399 71.062 -0.539 -1.337 -1.600 H8 JTK 28
JTK H9 H9 H 0 1 N N N N N N 0.227 2.401 73.051 1.672 2.097 -0.283 H9 JTK 29
JTK H10 H10 H 0 1 N N N N N N 0.141 -0.174 76.463 5.092 -0.444 -0.082 H10 JTK 30
JTK H11 H11 H 0 1 N N N N N N -0.840 -1.730 72.572 1.183 -2.142 0.102 H11 JTK 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JTK OAT CAR DOUB N N 1
JTK CAR OAS SING N N 2
JTK CAR CAP SING N N 3
JTK CAQ CAP SING N N 4
JTK CAP CAN SING N N 5
JTK CAN CAO DOUB Y N 6
JTK CAN CAM SING Y N 7
JTK CAO CAK SING Y N 8
JTK CAM CAI DOUB Y N 9
JTK CAK FAL SING N N 10
JTK CAK CAJ DOUB Y N 11
JTK CAI CAJ SING Y N 12
JTK CAJ CAG SING N N 13
JTK CAG CAF DOUB Y N 14
JTK CAG CAH SING Y N 15
JTK CAF CAB SING Y N 16
JTK CAH CAD DOUB Y N 17
JTK CAB CL2 SING N N 18
JTK CAB CAC DOUB Y N 19
JTK CAD CAC SING Y N 20
JTK CAD CL1 SING N N 21
JTK OAS H1 SING N N 22
JTK CAP H2 SING N N 23
JTK CAQ H3 SING N N 24
JTK CAQ H4 SING N N 25
JTK CAQ H5 SING N N 26
JTK CAO H6 SING N N 27
JTK CAM H7 SING N N 28
JTK CAI H8 SING N N 29
JTK CAH H9 SING N N 30
JTK CAC H10 SING N N 31
JTK CAF H11 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JTK InChI InChI 1.03 InChI=1S/C15H11Cl2FO2/c1-8(15(19)20)9-2-3-13(14(18)6-9)10-4-11(16)7-12(17)5-10/h2-8H,1H3,(H,19,20)/t8-/m1/s1
JTK InChIKey InChI 1.03 WFTMOACTNNIYQO-MRVPVSSYSA-N
JTK SMILES_CANONICAL CACTVS 3.385 C[C@@H](C(O)=O)c1ccc(c(F)c1)c2cc(Cl)cc(Cl)c2
JTK SMILES CACTVS 3.385 C[CH](C(O)=O)c1ccc(c(F)c1)c2cc(Cl)cc(Cl)c2
JTK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H](c1ccc(c(c1)F)c2cc(cc(c2)Cl)Cl)C(=O)O
JTK SMILES "OpenEye OEToolkits" 2.0.7 CC(c1ccc(c(c1)F)c2cc(cc(c2)Cl)Cl)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id JTK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-[4-[3,5-bis(chloranyl)phenyl]-3-fluoranyl-phenyl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JTK 'Create component' 2019-03-26 RCSB
JTK 'Initial release' 2019-09-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JTK OAS O 8.196 -3.143 1
JTK CAR C 6.897 -3.893 2
JTK OAT O 6.897 -5.393 3
JTK CAP C 5.598 -3.143 4
JTK CAQ C 4.299 -3.893 5
JTK CAN C 5.598 -1.643 6
JTK CAO C 4.299 -0.892 7
JTK CAK C 4.299 0.608 8
JTK FAL F 3.000 1.357 9
JTK CAM C 6.897 -0.892 10
JTK CAI C 6.897 0.608 11
JTK CAJ C 5.598 1.357 12
JTK CAG C 5.598 2.857 13
JTK CAH C 6.897 3.607 14
JTK CAD C 6.897 5.107 15
JTK CL1 Cl 8.196 5.857 16
JTK CAC C 5.598 5.857 17
JTK CAB C 4.299 5.107 18
JTK CL2 Cl 3.000 5.857 19
JTK CAF C 4.299 3.607 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JTK OAT CAR DOUBLE NONE 1
JTK CAR OAS SINGLE NONE 2
JTK CAR CAP SINGLE NONE 3
JTK CAP CAQ SINGLE BEGINDASH 4
JTK CAP CAN SINGLE NONE 5
JTK CAN CAO DOUBLE NONE 6
JTK CAN CAM SINGLE NONE 7
JTK CAO CAK SINGLE NONE 8
JTK CAM CAI DOUBLE NONE 9
JTK CAK FAL SINGLE NONE 10
JTK CAK CAJ DOUBLE NONE 11
JTK CAI CAJ SINGLE NONE 12
JTK CAJ CAG SINGLE NONE 13
JTK CAG CAF SINGLE NONE 14
JTK CAG CAH DOUBLE NONE 15
JTK CAF CAB DOUBLE NONE 16
JTK CAH CAD SINGLE NONE 17
JTK CAB CL2 SINGLE NONE 18
JTK CAB CAC SINGLE NONE 19
JTK CAD CAC DOUBLE NONE 20
JTK CAD CL1 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JTK MurckoScaffold S1 scaffold c1ccc(-c2ccccc2)cc1 InChI=1S/C12H10/c1-3-7-11(8-4-1)12-9-5-2-6-10-12/h1-10H ZUOUZKKEUPVFJK-UHFFFAOYSA-N
JTK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JTK Z2856434779 F2 fragment O=C(O)Cc1ccc(-c2ccccc2)cc1 InChI=1S/C14H12O2/c15-14(16)10-11-6-8-13(9-7-11)12-4-2-1-3-5-12/h1-9H,10H2,(H,15,16) QRZAKQDHEVVFRX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JTK CAN S1 1
JTK CAO S1 1
JTK CAK S1 1
JTK CAM S1 1
JTK CAI S1 1
JTK CAJ S1 1
JTK CAG S1 1
JTK CAH S1 1
JTK CAD S1 1
JTK CAC S1 1
JTK CAB S1 1
JTK CAF S1 1
JTK CAN F1 1
JTK CAO F1 1
JTK CAK F1 1
JTK CAJ F1 1
JTK CAI F1 1
JTK CAM F1 1
JTK CAG F1 2
JTK CAF F1 2
JTK CAB F1 2
JTK CAC F1 2
JTK CAD F1 2
JTK CAH F1 2
JTK OAS F2 1
JTK CAR F2 1
JTK OAT F2 1
JTK CAP F2 1
JTK CAN F2 1
JTK CAO F2 1
JTK CAK F2 1
JTK CAJ F2 1
JTK CAI F2 1
JTK CAM F2 1
JTK CAG F2 1
JTK CAF F2 1
JTK CAB F2 1
JTK CAC F2 1
JTK CAD F2 1
JTK CAH F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JTK
_pdbe_chem_comp_rdkit_properties.exactmw 312.012
_pdbe_chem_comp_rdkit_properties.amw 313.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.852
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.553
_pdbe_chem_comp_rdkit_properties.CrippenMR 76.319
_pdbe_chem_comp_rdkit_properties.chi0v 10.962
_pdbe_chem_comp_rdkit_properties.chi1v 5.731
_pdbe_chem_comp_rdkit_properties.chi2v 2.538
_pdbe_chem_comp_rdkit_properties.chi3v 2.538
_pdbe_chem_comp_rdkit_properties.chi4v 1.744
_pdbe_chem_comp_rdkit_properties.chi0n 20.450
_pdbe_chem_comp_rdkit_properties.chi1n 10.383
_pdbe_chem_comp_rdkit_properties.chi2n 2.160
_pdbe_chem_comp_rdkit_properties.chi3n 2.160
_pdbe_chem_comp_rdkit_properties.chi4n 1.317
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.580
_pdbe_chem_comp_rdkit_properties.kappa1 6.040
_pdbe_chem_comp_rdkit_properties.kappa2 5.815
_pdbe_chem_comp_rdkit_properties.kappa3 3.112
_pdbe_chem_comp_rdkit_properties.Phi 1.756
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
JTK UniChem ZINC ZINC000013672463
JTK UniChem PubChem 124351900
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JTK OAS -4.290 -1.249 -2.210 ETKDGv3 1
JTK CAR -4.044 -0.167 -1.371 ETKDGv3 2
JTK OAT -4.326 1.000 -1.756 ETKDGv3 3
JTK CAP -3.395 -0.399 -0.032 ETKDGv3 4
JTK CAQ -3.989 0.503 1.057 ETKDGv3 5
JTK CAN -1.891 -0.239 -0.127 ETKDGv3 6
JTK CAO -1.328 0.932 -0.485 ETKDGv3 7
JTK CAK 0.141 1.069 -0.566 ETKDGv3 8
JTK FAL 0.664 2.281 -0.884 ETKDGv3 9
JTK CAM -1.011 -1.391 0.188 ETKDGv3 10
JTK CAI 0.320 -1.270 0.114 ETKDGv3 11
JTK CAJ 0.939 0.017 -0.288 ETKDGv3 12
JTK CAG 2.417 0.121 -0.351 ETKDGv3 13
JTK CAH 3.034 0.678 -1.412 ETKDGv3 14
JTK CAD 4.510 0.753 -1.466 ETKDGv3 15
JTK CL1 5.294 1.489 -2.852 ETKDGv3 16
JTK CAC 5.243 0.257 -0.462 ETKDGv3 17
JTK CAB 4.579 -0.366 0.702 ETKDGv3 18
JTK CL2 5.547 -1.013 2.013 ETKDGv3 19
JTK CAF 3.242 -0.432 0.754 ETKDGv3 20
JTK H1 -4.710 -1.114 -3.122 ETKDGv3 21
JTK H2 -3.628 -1.446 0.265 ETKDGv3 22
JTK H3 -3.518 0.274 2.037 ETKDGv3 23
JTK H4 -3.825 1.577 0.827 ETKDGv3 24
JTK H5 -5.081 0.322 1.146 ETKDGv3 25
JTK H6 -1.941 1.793 -0.716 ETKDGv3 26
JTK H7 -1.441 -2.341 0.479 ETKDGv3 27
JTK H8 0.943 -2.126 0.338 ETKDGv3 28
JTK H9 2.460 1.059 -2.248 ETKDGv3 29
JTK H10 6.324 0.308 -0.498 ETKDGv3 30
JTK H11 2.760 -0.881 1.614 ETKDGv3 31
#