data_JQW
#
_chem_comp.id JQW
_chem_comp.name 4-[6,7-bis(chloranyl)-1~{H}-indol-3-yl]pyrimidin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H8 Cl2 N4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-21
_chem_comp.pdbx_modified_date 2020-04-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 279.125
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JQW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6R3D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JQW C4 C1 C 0 1 Y N N N N N 18.061 -18.064 3.221 -2.529 -0.547 -0.004 C4 JQW 1
JQW C5 C2 C 0 1 Y N N N N N 17.064 -18.461 2.332 -3.549 -1.505 -0.004 C5 JQW 2
JQW C6 C3 C 0 1 Y N N N N N 15.817 -17.891 2.389 -4.860 -1.069 -0.001 C6 JQW 3
JQW N1 N1 N 0 1 Y N N N N N 15.550 -16.895 3.339 -5.112 0.231 0.002 N1 JQW 4
JQW N3 N2 N 0 1 Y N N N N N 17.734 -17.129 4.117 -2.856 0.745 -0.001 N3 JQW 5
JQW CL1 CL1 CL 0 0 N N N N N N 23.821 -20.646 3.591 3.864 -1.386 -0.000 CL1 JQW 6
JQW CAD C4 C 0 1 Y N N N N N 22.525 -19.355 4.210 2.463 -0.361 0.003 CAD JQW 7
JQW CAC C5 C 0 1 Y N N N N N 22.767 -18.439 5.232 2.609 1.011 -0.000 CAC JQW 8
JQW CL2 CL2 CL 0 0 N N N N N N 24.246 -18.508 5.936 4.199 1.707 0.001 CL2 JQW 9
JQW CAB C6 C 0 1 Y N N N N N 21.784 -17.507 5.665 1.495 1.840 -0.004 CAB JQW 10
JQW CAA C7 C 0 1 Y N N N N N 20.541 -17.528 5.028 0.235 1.309 -0.004 CAA JQW 11
JQW CAF C8 C 0 1 Y N N N N N 20.341 -18.419 4.028 0.067 -0.075 -0.002 CAF JQW 12
JQW CAE C9 C 0 1 Y N N N N N 21.325 -19.295 3.646 1.188 -0.921 0.002 CAE JQW 13
JQW NAG N3 N 0 1 Y N N N N N 20.902 -20.053 2.653 0.725 -2.220 0.004 NAG JQW 14
JQW CAH C10 C 0 1 Y N N N N N 19.658 -19.677 2.380 -0.636 -2.234 0.002 CAH JQW 15
JQW CAI C11 C 0 1 Y N N N N N 19.305 -18.663 3.206 -1.109 -0.962 -0.002 CAI JQW 16
JQW C2 C12 C 0 1 Y N N N N N 16.527 -16.559 4.164 -4.126 1.117 0.002 C2 JQW 17
JQW NAP N4 N 0 1 N N N N N N 16.272 -15.639 5.046 -4.433 2.467 0.005 NAP JQW 18
JQW H1 H1 H 0 1 N N N N N N 17.274 -19.221 1.594 -3.317 -2.559 -0.006 H1 JQW 19
JQW H2 H2 H 0 1 N N N N N N 15.044 -18.208 1.705 -5.672 -1.782 -0.001 H2 JQW 20
JQW H3 H3 H 0 1 N N N N N N 21.992 -16.806 6.460 1.625 2.912 -0.006 H3 JQW 21
JQW H4 H4 H 0 1 N N N N N N 19.757 -16.848 5.327 -0.627 1.959 -0.007 H4 JQW 22
JQW H5 H5 H 0 1 N N N N N N 21.420 -20.774 2.193 1.289 -3.009 0.006 H5 JQW 23
JQW H6 H6 H 0 1 N N N N N N 19.027 -20.111 1.619 -1.247 -3.125 0.002 H6 JQW 24
JQW H7 H7 H 0 1 N N N N N N 15.327 -15.328 4.941 -5.360 2.754 0.007 H7 JQW 25
JQW H8 H8 H 0 1 N N N N N N 16.399 -16.014 5.964 -3.721 3.126 0.004 H8 JQW 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JQW C4 C5 DOUB Y N 1
JQW C4 N3 SING Y N 2
JQW C4 CAI SING N N 3
JQW C5 C6 SING Y N 4
JQW C6 N1 DOUB Y N 5
JQW N1 C2 SING Y N 6
JQW N3 C2 DOUB Y N 7
JQW CAD CAC DOUB Y N 8
JQW CAD CAE SING Y N 9
JQW CAC CL2 SING N N 10
JQW CAC CAB SING Y N 11
JQW CAB CAA DOUB Y N 12
JQW CAA CAF SING Y N 13
JQW CAF CAE DOUB Y N 14
JQW CAF CAI SING Y N 15
JQW CAE NAG SING Y N 16
JQW NAG CAH SING Y N 17
JQW CAH CAI DOUB Y N 18
JQW C2 NAP SING N N 19
JQW CAD CL1 SING N N 20
JQW C5 H1 SING N N 21
JQW C6 H2 SING N N 22
JQW CAB H3 SING N N 23
JQW CAA H4 SING N N 24
JQW NAG H5 SING N N 25
JQW CAH H6 SING N N 26
JQW NAP H7 SING N N 27
JQW NAP H8 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JQW InChI InChI 1.03 InChI=1S/C12H8Cl2N4/c13-8-2-1-6-7(5-17-11(6)10(8)14)9-3-4-16-12(15)18-9/h1-5,17H,(H2,15,16,18)
JQW InChIKey InChI 1.03 QTGPPZWMCRJECL-UHFFFAOYSA-N
JQW SMILES_CANONICAL CACTVS 3.385 Nc1nccc(n1)c2c[nH]c3c(Cl)c(Cl)ccc23
JQW SMILES CACTVS 3.385 Nc1nccc(n1)c2c[nH]c3c(Cl)c(Cl)ccc23
JQW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(c2c1c(c[nH]2)c3ccnc(n3)N)Cl)Cl
JQW SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(c2c1c(c[nH]2)c3ccnc(n3)N)Cl)Cl
#
_pdbx_chem_comp_identifier.comp_id JQW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 4-[6,7-bis(chloranyl)-1~{H}-indol-3-yl]pyrimidin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JQW 'Create component' 2019-03-21 RCSB
JQW 'Initial release' 2020-04-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
JQW C4 C 8.783 0.545 1
JQW C5 C 10.250 0.854 2
JQW C6 C 10.716 2.280 3
JQW N1 N 9.714 3.397 4
JQW N3 N 7.781 1.661 5
JQW CL1 Cl 5.598 -5.088 6
JQW CAD C 5.598 -3.588 7
JQW CAC C 4.299 -2.838 8
JQW CL2 Cl 3.000 -3.588 9
JQW CAB C 4.299 -1.338 10
JQW CAA C 5.598 -0.588 11
JQW CAF C 6.897 -1.338 12
JQW CAE C 6.897 -2.838 13
JQW NAG N 8.316 -3.295 14
JQW CAH C 9.192 -2.088 15
JQW CAI C 8.316 -0.881 16
JQW C2 C 8.247 3.087 17
JQW NAP N 7.245 4.204 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
JQW C4 C5 DOUBLE NONE 1
JQW C4 N3 SINGLE NONE 2
JQW C4 CAI SINGLE NONE 3
JQW C5 C6 SINGLE NONE 4
JQW C6 N1 DOUBLE NONE 5
JQW N1 C2 SINGLE NONE 6
JQW N3 C2 DOUBLE NONE 7
JQW CAD CAC DOUBLE NONE 8
JQW CAD CAE SINGLE NONE 9
JQW CAC CL2 SINGLE NONE 10
JQW CAC CAB SINGLE NONE 11
JQW CAB CAA DOUBLE NONE 12
JQW CAA CAF SINGLE NONE 13
JQW CAF CAE DOUBLE NONE 14
JQW CAF CAI SINGLE NONE 15
JQW CAE NAG SINGLE NONE 16
JQW NAG CAH SINGLE NONE 17
JQW CAH CAI DOUBLE NONE 18
JQW C2 NAP SINGLE NONE 19
JQW CAD CL1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
JQW MurckoScaffold S1 scaffold 'c1ccc2c(-c3ccncn3)c[nH]c2c1' InChI=1S/C12H9N3/c1-2-4-11-9(3-1)10(7-14-11)12-5-6-13-8-15-12/h1-8,14H VMRRAPJKCORFKX-UHFFFAOYSA-N
JQW indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
JQW phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
JQW pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
JQW pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
JQW C4 S1 1
JQW C5 S1 1
JQW C6 S1 1
JQW N1 S1 1
JQW N3 S1 1
JQW CAD S1 1
JQW CAC S1 1
JQW CAB S1 1
JQW CAA S1 1
JQW CAF S1 1
JQW CAE S1 1
JQW NAG S1 1
JQW CAH S1 1
JQW CAI S1 1
JQW C2 S1 1
JQW CAE F1 1
JQW CAF F1 1
JQW CAI F1 1
JQW CAH F1 1
JQW NAG F1 1
JQW CAA F1 1
JQW CAB F1 1
JQW CAC F1 1
JQW CAD F1 1
JQW CAD F2 1
JQW CAC F2 1
JQW CAB F2 1
JQW CAA F2 1
JQW CAF F2 1
JQW CAE F2 1
JQW C5 F3 1
JQW C4 F3 1
JQW N3 F3 1
JQW C2 F3 1
JQW N1 F3 1
JQW C6 F3 1
JQW CAE F4 1
JQW CAF F4 1
JQW CAI F4 1
JQW CAH F4 1
JQW NAG F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id JQW
_pdbe_chem_comp_rdkit_properties.exactmw 278.013
_pdbe_chem_comp_rdkit_properties.amw 279.130
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 124.179
_pdbe_chem_comp_rdkit_properties.tpsa 67.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.325
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.405
_pdbe_chem_comp_rdkit_properties.chi0v 10.057
_pdbe_chem_comp_rdkit_properties.chi1v 5.449
_pdbe_chem_comp_rdkit_properties.chi2v 2.991
_pdbe_chem_comp_rdkit_properties.chi3v 2.991
_pdbe_chem_comp_rdkit_properties.chi4v 1.793
_pdbe_chem_comp_rdkit_properties.chi0n 16.545
_pdbe_chem_comp_rdkit_properties.chi1n 8.535
_pdbe_chem_comp_rdkit_properties.chi2n 2.243
_pdbe_chem_comp_rdkit_properties.chi3n 2.243
_pdbe_chem_comp_rdkit_properties.chi4n 1.472
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.780
_pdbe_chem_comp_rdkit_properties.kappa1 5.465
_pdbe_chem_comp_rdkit_properties.kappa2 4.154
_pdbe_chem_comp_rdkit_properties.kappa3 1.701
_pdbe_chem_comp_rdkit_properties.Phi 1.261
#
_pdbe_chem_comp_external_mappings.comp_id JQW
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 146018260
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
JQW C4 1.287 0.117 0.316 ETKDGv3 1
JQW C5 1.425 1.442 0.472 ETKDGv3 2
JQW C6 2.593 1.949 1.214 ETKDGv3 3
JQW N1 3.474 1.118 1.686 ETKDGv3 4
JQW N3 2.296 -0.762 0.846 ETKDGv3 5
JQW CL1 -4.163 -1.750 -2.647 ETKDGv3 6
JQW CAD -3.332 -0.627 -1.578 ETKDGv3 7
JQW CAC -3.975 0.395 -0.971 ETKDGv3 8
JQW CL2 -5.694 0.672 -1.217 ETKDGv3 9
JQW CAB -3.232 1.308 -0.055 ETKDGv3 10
JQW CAA -1.917 1.139 0.165 ETKDGv3 11
JQW CAF -1.224 0.041 -0.536 ETKDGv3 12
JQW CAE -1.888 -0.790 -1.320 ETKDGv3 13
JQW NAG -1.053 -1.848 -1.765 ETKDGv3 14
JQW CAH 0.207 -1.579 -1.155 ETKDGv3 15
JQW CAI 0.152 -0.459 -0.432 ETKDGv3 16
JQW C2 3.326 -0.298 1.494 ETKDGv3 17
JQW NAP 4.307 -1.194 2.011 ETKDGv3 18
JQW H1 0.727 2.144 0.037 ETKDGv3 19
JQW H2 2.722 3.013 1.361 ETKDGv3 20
JQW H3 -3.760 2.105 0.453 ETKDGv3 21
JQW H4 -1.396 1.780 0.863 ETKDGv3 22
JQW H5 -1.309 -2.665 -2.362 ETKDGv3 23
JQW H6 1.085 -2.199 -1.283 ETKDGv3 24
JQW H7 4.210 -2.225 1.875 ETKDGv3 25
JQW H8 5.134 -0.825 2.530 ETKDGv3 26
#