data_IXK
#
_chem_comp.id IXK
_chem_comp.name
"[5-(6-aminopurin-9-yl)-2-(hydroxymethyl)furan-3-yl] [5-(6-aminopurin-9-yl)-3-oxidanyl-furan-2-yl]methyl hydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H17 N10 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-08-02
_chem_comp.pdbx_modified_date 2023-07-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 556.385
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IXK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7YKV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IXK C13 C1 C 0 1 Y N N N N N 65.915 36.108 35.558 -3.034 1.647 0.174 C13 IXK 1
IXK C15 C2 C 0 1 Y N N N N N 67.847 37.042 36.307 -3.706 -0.466 0.289 C15 IXK 2
IXK C24 C3 C 0 1 Y N N N N N 68.557 34.574 41.237 3.303 -1.579 -0.261 C24 IXK 3
IXK C26 C4 C 0 1 Y N N N N N 70.526 35.429 40.888 5.293 -1.084 0.529 C26 IXK 4
IXK C28 C5 C 0 1 Y N N N N N 68.810 35.405 42.373 3.733 -2.663 0.415 C28 IXK 5
IXK C1 C6 C 0 1 Y N N N N N 70.510 40.472 32.764 -9.580 -0.077 0.248 C1 IXK 6
IXK C3 C7 C 0 1 Y N N N N N 71.474 38.490 33.680 -8.710 1.610 1.562 C3 IXK 7
IXK C5 C8 C 0 1 Y N N N N N 69.184 38.822 34.025 -7.213 0.373 0.332 C5 IXK 8
IXK C6 C9 C 0 1 Y N N N N N 69.232 40.058 33.294 -8.278 -0.389 -0.177 C6 IXK 9
IXK C9 C10 C 0 1 Y N N N N N 67.202 39.719 33.958 -6.452 -1.163 -1.058 C9 IXK 10
IXK C11 C11 C 0 1 Y N N N N N 67.378 37.608 35.136 -4.768 0.311 -0.027 C11 IXK 11
IXK C14 C12 C 0 1 Y N N N N N 66.849 36.024 36.621 -2.590 0.397 0.412 C14 IXK 12
IXK C16 C13 C 0 1 N N N N N N 64.582 35.308 35.267 -2.196 2.899 0.195 C16 IXK 13
IXK C23 C14 C 0 1 N N N N N N 67.263 33.789 40.923 1.982 -1.453 -0.976 C23 IXK 14
IXK C27 C15 C 0 1 Y N N N N N 70.153 35.943 42.108 5.015 -2.347 0.925 C27 IXK 15
IXK C31 C16 C 0 1 Y N N N N N 72.975 35.707 40.690 7.035 -0.225 2.047 C31 IXK 16
IXK C33 C17 C 0 1 Y N N N N N 73.190 35.763 38.500 8.306 0.850 0.655 C33 IXK 17
IXK C34 C18 C 0 1 Y N N N N N 71.817 35.619 38.824 7.251 0.294 -0.088 C34 IXK 18
IXK C35 C19 C 0 1 Y N N N N N 73.541 35.830 37.087 9.276 1.601 -0.029 C35 IXK 19
IXK C37 C20 C 0 1 Y N N N N N 71.279 35.592 36.525 8.141 1.208 -2.000 C37 IXK 20
IXK N2 N1 N 0 1 Y N N N N N 71.578 39.694 32.968 -9.743 0.921 1.110 N2 IXK 21
IXK N4 N2 N 0 1 Y N N N N N 70.290 38.055 34.202 -7.473 1.354 1.191 N4 IXK 22
IXK N7 N3 N 0 1 N N N N N N 70.576 41.709 32.034 -10.669 -0.790 -0.223 N7 IXK 23
IXK N8 N4 N 0 1 Y N N N N N 67.931 38.696 34.385 -6.073 -0.137 -0.241 N8 IXK 24
IXK N10 N5 N 0 1 Y N N N N N 68.027 40.559 33.283 -7.745 -1.308 -1.018 N10 IXK 25
IXK N30 N6 N 0 1 Y N N N N N 71.732 35.601 40.183 6.463 -0.377 0.816 N30 IXK 26
IXK N32 N7 N 0 1 Y N N N N N 73.867 35.811 39.677 8.113 0.498 1.949 N32 IXK 27
IXK N36 N8 N 0 1 Y N N N N N 72.568 35.744 36.162 9.150 1.750 -1.344 N36 IXK 28
IXK N38 N9 N 0 1 Y N N N N N 70.900 35.534 37.847 7.209 0.497 -1.401 N38 IXK 29
IXK N39 N10 N 0 1 N N N N N N 74.913 35.982 36.667 10.338 2.174 0.649 N39 IXK 30
IXK O12 O1 O 0 1 Y N N N N N 66.265 37.039 34.752 -4.354 1.588 -0.091 O12 IXK 31
IXK O17 O2 O 0 1 N N N N N N 63.471 36.136 35.838 -1.666 3.139 -1.110 O17 IXK 32
IXK O18 O3 O 0 1 N N N N N N 66.927 35.130 37.751 -1.313 0.033 0.713 O18 IXK 33
IXK O20 O4 O 0 1 N N N N N N 64.965 33.751 38.799 -0.563 0.214 -1.690 O20 IXK 34
IXK O21 O5 O 0 1 N N N N N N 64.830 36.001 38.939 -1.236 -2.072 -0.860 O21 IXK 35
IXK O22 O6 O 0 1 N N N N N N 66.463 34.846 40.470 1.001 -0.935 -0.076 O22 IXK 36
IXK O25 O7 O 0 1 Y N N N N N 69.531 34.638 40.432 4.251 -0.624 -0.184 O25 IXK 37
IXK O29 O8 O 0 1 N N N N N N 67.959 35.634 43.524 3.062 -3.837 0.577 O29 IXK 38
IXK P19 P1 P 0 1 N N N N N N 65.775 34.932 38.975 -0.529 -0.671 -0.504 P19 IXK 39
IXK H1 H1 H 0 1 N N N N N N 68.741 37.294 36.859 -3.708 -1.538 0.416 H1 IXK 40
IXK H2 H2 H 0 1 N N N N N N 72.359 37.888 33.820 -8.887 2.414 2.261 H2 IXK 41
IXK H3 H3 H 0 1 N N N N N N 66.143 39.858 34.119 -5.779 -1.765 -1.650 H3 IXK 42
IXK H4 H4 H 0 1 N N N N N N 64.443 35.177 34.184 -2.813 3.745 0.498 H4 IXK 43
IXK H5 H5 H 0 1 N N N N N N 64.614 34.322 35.754 -1.376 2.775 0.903 H5 IXK 44
IXK H6 H6 H 0 1 N N N N N N 66.844 33.311 41.821 2.092 -0.776 -1.824 H6 IXK 45
IXK H7 H7 H 0 1 N N N N N N 67.421 33.029 40.143 1.667 -2.433 -1.332 H7 IXK 46
IXK H8 H8 H 0 1 N N N N N N 70.727 36.604 42.740 5.651 -2.993 1.513 H8 IXK 47
IXK H9 H9 H 0 1 N N N N N N 73.222 35.709 41.741 6.647 -0.639 2.966 H9 IXK 48
IXK H10 H10 H 0 1 N N N N N N 70.523 35.514 35.758 8.076 1.354 -3.068 H10 IXK 49
IXK H11 H11 H 0 1 N N N N N N 71.515 41.866 31.727 -11.564 -0.562 0.075 H11 IXK 50
IXK H12 H12 H 0 1 N N N N N N 69.970 41.660 31.240 -10.538 -1.516 -0.852 H12 IXK 51
IXK H13 H13 H 0 1 N N N N N N 74.956 36.004 35.668 10.419 2.058 1.609 H13 IXK 52
IXK H14 H14 H 0 1 N N N N N N 75.282 36.835 37.035 11.001 2.690 0.165 H14 IXK 53
IXK H15 H15 H 0 1 N N N N N N 62.641 35.698 35.690 -1.114 3.931 -1.171 H15 IXK 54
IXK H16 H16 H 0 1 N N N N N N 63.957 35.648 38.813 -1.250 -2.703 -0.127 H16 IXK 55
IXK H17 H17 H 0 1 N N N N N N 68.388 36.235 44.121 3.238 -4.490 -0.115 H17 IXK 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IXK N7 C1 SING N N 1
IXK C1 N2 DOUB Y N 2
IXK C1 C6 SING Y N 3
IXK N2 C3 SING Y N 4
IXK N10 C6 SING Y N 5
IXK N10 C9 DOUB Y N 6
IXK C6 C5 DOUB Y N 7
IXK C3 N4 DOUB Y N 8
IXK C9 N8 SING Y N 9
IXK C5 N4 SING Y N 10
IXK C5 N8 SING Y N 11
IXK N8 C11 SING N N 12
IXK O12 C11 SING Y N 13
IXK O12 C13 SING Y N 14
IXK C11 C15 DOUB Y N 15
IXK C16 C13 SING N N 16
IXK C16 O17 SING N N 17
IXK C13 C14 DOUB Y N 18
IXK N36 C37 DOUB Y N 19
IXK N36 C35 SING Y N 20
IXK C15 C14 SING Y N 21
IXK C37 N38 SING Y N 22
IXK C14 O18 SING N N 23
IXK N39 C35 SING N N 24
IXK C35 C33 DOUB Y N 25
IXK O18 P19 SING N N 26
IXK N38 C34 DOUB Y N 27
IXK C33 C34 SING Y N 28
IXK C33 N32 SING Y N 29
IXK O20 P19 DOUB N N 30
IXK C34 N30 SING Y N 31
IXK O21 P19 SING N N 32
IXK P19 O22 SING N N 33
IXK N32 C31 DOUB Y N 34
IXK N30 C31 SING Y N 35
IXK N30 C26 SING N N 36
IXK O25 C26 SING Y N 37
IXK O25 C24 SING Y N 38
IXK O22 C23 SING N N 39
IXK C26 C27 DOUB Y N 40
IXK C23 C24 SING N N 41
IXK C24 C28 DOUB Y N 42
IXK C27 C28 SING Y N 43
IXK C28 O29 SING N N 44
IXK C15 H1 SING N N 45
IXK C3 H2 SING N N 46
IXK C9 H3 SING N N 47
IXK C16 H4 SING N N 48
IXK C16 H5 SING N N 49
IXK C23 H6 SING N N 50
IXK C23 H7 SING N N 51
IXK C27 H8 SING N N 52
IXK C31 H9 SING N N 53
IXK C37 H10 SING N N 54
IXK N7 H11 SING N N 55
IXK N7 H12 SING N N 56
IXK N39 H13 SING N N 57
IXK N39 H14 SING N N 58
IXK O17 H15 SING N N 59
IXK O21 H16 SING N N 60
IXK O29 H17 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IXK InChI InChI 1.06 InChI=1S/C20H17N10O8P/c21-17-15-19(25-5-23-17)29(7-27-15)13-1-9(32)12(37-13)4-35-39(33,34)38-10-2-14(36-11(10)3-31)30-8-28-16-18(22)24-6-26-20(16)30/h1-2,5-8,31-32H,3-4H2,(H,33,34)(H2,21,23,25)(H2,22,24,26)
IXK InChIKey InChI 1.06 XKEWDTWLEZMIAN-UHFFFAOYSA-N
IXK SMILES_CANONICAL CACTVS 3.385 Nc1ncnc2n(cnc12)c3oc(CO[P](O)(=O)Oc4cc(oc4CO)n5cnc6c(N)ncnc56)c(O)c3
IXK SMILES CACTVS 3.385 Nc1ncnc2n(cnc12)c3oc(CO[P](O)(=O)Oc4cc(oc4CO)n5cnc6c(N)ncnc56)c(O)c3
IXK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1c(c(oc1n2cnc3c2ncnc3N)COP(=O)(O)Oc4cc(oc4CO)n5cnc6c5ncnc6N)O
IXK SMILES "OpenEye OEToolkits" 2.0.7 c1c(c(oc1n2cnc3c2ncnc3N)COP(=O)(O)Oc4cc(oc4CO)n5cnc6c5ncnc6N)O
#
_pdbx_chem_comp_identifier.comp_id IXK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[5-(6-aminopurin-9-yl)-2-(hydroxymethyl)furan-3-yl] [5-(6-aminopurin-9-yl)-3-oxidanyl-furan-2-yl]methyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IXK 'Create component' 2022-08-02 PDBJ
IXK 'Initial release' 2023-07-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IXK C13 C 7.487 2.949 1
IXK C15 C 8.911 0.983 2
IXK C24 C 15.451 2.405 3
IXK C26 C 17.252 0.778 4
IXK C28 C 16.752 3.153 5
IXK C1 C 4.299 -3.611 6
IXK C3 C 3.000 -1.361 7
IXK C5 C 5.598 -1.361 8
IXK C6 C 5.598 -2.861 9
IXK C9 C 7.893 -2.111 10
IXK C11 C 7.483 0.522 11
IXK C14 C 8.913 2.483 12
IXK C16 C 7.027 4.376 13
IXK C23 C 14.082 3.017 14
IXK C27 C 17.865 2.147 15
IXK C31 C 17.390 -1.883 16
IXK C33 C 19.790 -2.148 17
IXK C34 C 19.483 -0.680 18
IXK C35 C 21.214 -2.617 19
IXK C37 C 22.026 -0.148 20
IXK N2 N 3.000 -2.861 21
IXK N4 N 4.299 -0.611 22
IXK N7 N 4.299 -5.111 23
IXK N8 N 7.018 -0.904 24
IXK N10 N 7.018 -3.318 25
IXK N30 N 18.000 -0.523 26
IXK N32 N 18.494 -2.886 27
IXK N36 N 22.333 -1.617 28
IXK N38 N 20.601 0.320 29
IXK N39 N 21.521 -4.085 30
IXK O12 O 6.604 1.737 31
IXK O17 O 5.560 4.691 32
IXK O18 O 10.129 3.363 33
IXK O20 O 12.110 4.120 34
IXK O21 O 10.885 1.381 35
IXK O22 O 12.867 2.138 36
IXK O25 O 15.761 0.937 37
IXK O29 O 16.911 4.644 38
IXK P19 P 11.498 2.750 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IXK N7 C1 SINGLE NONE 1
IXK C1 N2 DOUBLE NONE 2
IXK C1 C6 SINGLE NONE 3
IXK N2 C3 SINGLE NONE 4
IXK N10 C6 SINGLE NONE 5
IXK N10 C9 DOUBLE NONE 6
IXK C6 C5 DOUBLE NONE 7
IXK C3 N4 DOUBLE NONE 8
IXK C9 N8 SINGLE NONE 9
IXK C5 N4 SINGLE NONE 10
IXK C5 N8 SINGLE NONE 11
IXK N8 C11 SINGLE NONE 12
IXK O12 C11 SINGLE NONE 13
IXK O12 C13 SINGLE NONE 14
IXK C11 C15 DOUBLE NONE 15
IXK C16 C13 SINGLE NONE 16
IXK C16 O17 SINGLE NONE 17
IXK C13 C14 DOUBLE NONE 18
IXK N36 C37 DOUBLE NONE 19
IXK N36 C35 SINGLE NONE 20
IXK C15 C14 SINGLE NONE 21
IXK C37 N38 SINGLE NONE 22
IXK C14 O18 SINGLE NONE 23
IXK N39 C35 SINGLE NONE 24
IXK C35 C33 DOUBLE NONE 25
IXK O18 P19 SINGLE NONE 26
IXK N38 C34 DOUBLE NONE 27
IXK C33 C34 SINGLE NONE 28
IXK C33 N32 SINGLE NONE 29
IXK O20 P19 DOUBLE NONE 30
IXK C34 N30 SINGLE NONE 31
IXK P19 O21 SINGLE BEGINDASH 32
IXK P19 O22 SINGLE NONE 33
IXK N32 C31 DOUBLE NONE 34
IXK N30 C31 SINGLE NONE 35
IXK N30 C26 SINGLE NONE 36
IXK O25 C26 SINGLE NONE 37
IXK O25 C24 SINGLE NONE 38
IXK O22 C23 SINGLE NONE 39
IXK C26 C27 DOUBLE NONE 40
IXK C23 C24 SINGLE NONE 41
IXK C24 C28 DOUBLE NONE 42
IXK C27 C28 SINGLE NONE 43
IXK C28 O29 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IXK MurckoScaffold S1 scaffold 'O=[PH](OCc1ccc(-n2cnc3cncnc32)o1)Oc1coc(-n2cnc3cncnc32)c1' InChI=1S/C19H13N8O5P/c28-33(32-13-3-17(29-6-13)27-11-25-15-5-21-9-23-19(15)27)30-7-12-1-2-16(31-12)26-10-24-14-4-20-8-22-18(14)26/h1-6,8-11,33H,7H2 SRNQKNPSKOBVPH-UHFFFAOYSA-N
IXK adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
IXK furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
IXK imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
IXK phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
IXK purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
IXK pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IXK C13 S1 1
IXK C15 S1 1
IXK C24 S1 1
IXK C26 S1 1
IXK C28 S1 1
IXK C1 S1 1
IXK C3 S1 1
IXK C5 S1 1
IXK C6 S1 1
IXK C9 S1 1
IXK C11 S1 1
IXK C14 S1 1
IXK C23 S1 1
IXK C27 S1 1
IXK C31 S1 1
IXK C33 S1 1
IXK C34 S1 1
IXK C35 S1 1
IXK C37 S1 1
IXK N2 S1 1
IXK N4 S1 1
IXK N8 S1 1
IXK N10 S1 1
IXK N30 S1 1
IXK N32 S1 1
IXK N36 S1 1
IXK N38 S1 1
IXK O12 S1 1
IXK O18 S1 1
IXK O20 S1 1
IXK O22 S1 1
IXK O25 S1 1
IXK P19 S1 1
IXK N2 F1 1
IXK C1 F1 1
IXK C6 F1 1
IXK C5 F1 1
IXK N4 F1 1
IXK C3 F1 1
IXK N8 F1 1
IXK C9 F1 1
IXK N10 F1 1
IXK N7 F1 1
IXK N36 F1 2
IXK C35 F1 2
IXK C33 F1 2
IXK C34 F1 2
IXK N38 F1 2
IXK C37 F1 2
IXK N30 F1 2
IXK C31 F1 2
IXK N32 F1 2
IXK N39 F1 2
IXK C13 F2 1
IXK C14 F2 1
IXK C15 F2 1
IXK C11 F2 1
IXK O12 F2 1
IXK C24 F2 2
IXK C28 F2 2
IXK C27 F2 2
IXK C26 F2 2
IXK O25 F2 2
IXK C5 F3 1
IXK C6 F3 1
IXK N10 F3 1
IXK C9 F3 1
IXK N8 F3 1
IXK C33 F3 2
IXK C34 F3 2
IXK N30 F3 2
IXK C31 F3 2
IXK N32 F3 2
IXK O18 F4 1
IXK P19 F4 1
IXK O20 F4 1
IXK O21 F4 1
IXK O22 F4 1
IXK N10 F5 1
IXK C9 F5 1
IXK N8 F5 1
IXK C5 F5 1
IXK C6 F5 1
IXK C1 F5 1
IXK N2 F5 1
IXK C3 F5 1
IXK N4 F5 1
IXK N32 F5 2
IXK C31 F5 2
IXK N30 F5 2
IXK C34 F5 2
IXK C33 F5 2
IXK C35 F5 2
IXK N36 F5 2
IXK C37 F5 2
IXK N38 F5 2
IXK C6 F6 1
IXK C1 F6 1
IXK N2 F6 1
IXK C3 F6 1
IXK N4 F6 1
IXK C5 F6 1
IXK C33 F6 2
IXK C35 F6 2
IXK N36 F6 2
IXK C37 F6 2
IXK N38 F6 2
IXK C34 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id IXK
_pdbe_chem_comp_rdkit_properties.exactmw 556.097
_pdbe_chem_comp_rdkit_properties.amw 556.392
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.657
_pdbe_chem_comp_rdkit_properties.tpsa 261.740
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.844
_pdbe_chem_comp_rdkit_properties.CrippenMR 120.373
_pdbe_chem_comp_rdkit_properties.chi0v 19.080
_pdbe_chem_comp_rdkit_properties.chi1v 11.296
_pdbe_chem_comp_rdkit_properties.chi2v 5.342
_pdbe_chem_comp_rdkit_properties.chi3v 5.342
_pdbe_chem_comp_rdkit_properties.chi4v 3.599
_pdbe_chem_comp_rdkit_properties.chi0n 35.185
_pdbe_chem_comp_rdkit_properties.chi1n 17.849
_pdbe_chem_comp_rdkit_properties.chi2n 4.621
_pdbe_chem_comp_rdkit_properties.chi3n 4.621
_pdbe_chem_comp_rdkit_properties.chi4n 3.015
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.030
_pdbe_chem_comp_rdkit_properties.kappa1 11.788
_pdbe_chem_comp_rdkit_properties.kappa2 9.065
_pdbe_chem_comp_rdkit_properties.kappa3 4.279
_pdbe_chem_comp_rdkit_properties.Phi 2.740
#
_pdbe_chem_comp_external_mappings.comp_id IXK
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168431765
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IXK C13 -2.979 -0.795 2.207 ETKDGv3 1
IXK C15 -3.898 -0.189 0.243 ETKDGv3 2
IXK C24 2.778 0.906 -0.642 ETKDGv3 3
IXK C26 4.960 0.536 -0.453 ETKDGv3 4
IXK C28 3.382 1.562 -1.626 ETKDGv3 5
IXK C1 -9.186 0.369 -1.191 ETKDGv3 6
IXK C3 -7.249 0.720 -2.573 ETKDGv3 7
IXK C5 -6.969 0.063 -0.329 ETKDGv3 8
IXK C6 -8.254 0.031 -0.108 ETKDGv3 9
IXK C9 -7.355 -0.540 1.763 ETKDGv3 10
IXK C11 -4.874 -0.420 1.115 ETKDGv3 11
IXK C14 -2.655 -0.443 0.971 ETKDGv3 12
IXK C16 -2.020 -1.168 3.295 ETKDGv3 13
IXK C23 1.308 0.851 -0.379 ETKDGv3 14
IXK C27 4.815 1.329 -1.510 ETKDGv3 15
IXK C31 6.385 -0.827 1.194 ETKDGv3 16
IXK C33 8.396 -0.489 0.449 ETKDGv3 17
IXK C34 7.526 0.232 -0.406 ETKDGv3 18
IXK C35 9.711 -0.474 0.240 ETKDGv3 19
IXK C37 9.370 0.963 -1.661 ETKDGv3 20
IXK N2 -8.682 0.693 -2.353 ETKDGv3 21
IXK N4 -6.423 0.418 -1.605 ETKDGv3 22
IXK N7 -10.598 0.347 -0.992 ETKDGv3 23
IXK N8 -6.276 -0.301 0.851 ETKDGv3 24
IXK N10 -8.532 -0.355 1.235 ETKDGv3 25
IXK N30 6.203 0.034 0.052 ETKDGv3 26
IXK N32 7.628 -1.146 1.450 ETKDGv3 27
IXK N36 10.195 0.302 -0.882 ETKDGv3 28
IXK N38 7.943 0.932 -1.416 ETKDGv3 29
IXK N39 10.618 -1.187 1.079 ETKDGv3 30
IXK O12 -4.359 -0.800 2.349 ETKDGv3 31
IXK O17 -1.504 -2.450 3.065 ETKDGv3 32
IXK O18 -1.349 -0.349 0.487 ETKDGv3 33
IXK O20 -1.527 1.509 -1.388 ETKDGv3 34
IXK O21 -1.730 -0.965 -2.199 ETKDGv3 35
IXK O22 0.692 0.091 -1.391 ETKDGv3 36
IXK O25 3.729 0.242 0.122 ETKDGv3 37
IXK O29 2.767 2.336 -2.607 ETKDGv3 38
IXK P19 -0.992 0.118 -1.129 ETKDGv3 39
IXK H1 -4.003 0.118 -0.787 ETKDGv3 40
IXK H2 -6.860 0.991 -3.545 ETKDGv3 41
IXK H3 -7.215 -0.846 2.791 ETKDGv3 42
IXK H4 -1.182 -0.440 3.317 ETKDGv3 43
IXK H5 -2.534 -1.126 4.282 ETKDGv3 44
IXK H6 1.154 0.377 0.615 ETKDGv3 45
IXK H7 0.917 1.894 -0.356 ETKDGv3 46
IXK H8 5.591 1.718 -2.154 ETKDGv3 47
IXK H9 5.562 -1.185 1.799 ETKDGv3 48
IXK H10 9.758 1.534 -2.493 ETKDGv3 49
IXK H11 -11.246 0.590 -1.775 ETKDGv3 50
IXK H12 -11.001 0.088 -0.065 ETKDGv3 51
IXK H13 10.277 -1.749 1.891 ETKDGv3 52
IXK H14 11.644 -1.153 0.886 ETKDGv3 53
IXK H15 -2.226 -3.092 3.296 ETKDGv3 54
IXK H16 -1.395 -1.856 -1.923 ETKDGv3 55
IXK H17 1.761 2.455 -2.638 ETKDGv3 56
#