data_IXG
#
_chem_comp.id IXG
_chem_comp.name N~6~-methyl-N~6~-phenylpyrido[2,3-d]pyrimidine-2,4,6-triamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-02-08
_chem_comp.pdbx_modified_date 2013-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.301
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IXG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4IXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IXG CAQ CAQ C 0 1 Y N N N N N 16.457 3.746 9.279 5.296 -1.148 -0.119 CAQ IXG 1
IXG CAG CAG C 0 1 Y N N N N N 17.262 3.135 10.250 4.689 -0.710 -1.283 CAG IXG 2
IXG CAI CAI C 0 1 Y N N N N N 16.665 2.508 11.354 3.523 0.027 -1.220 CAI IXG 3
IXG CAF CAF C 0 1 Y N N N N N 15.066 3.663 9.402 4.737 -0.850 1.110 CAF IXG 4
IXG CAH CAH C 0 1 Y N N N N N 14.477 3.027 10.508 3.570 -0.115 1.180 CAH IXG 5
IXG CAR CAR C 0 1 Y N N N N N 15.261 2.451 11.496 2.958 0.328 0.014 CAR IXG 6
IXG NAW NAW N 0 1 N N N N N N 14.666 1.804 12.543 1.779 1.073 0.080 NAW IXG 7
IXG CAC CAC C 0 1 N N N N N N 14.931 2.234 13.890 1.839 2.534 0.168 CAC IXG 8
IXG CAS CAS C 0 1 Y N N N N N 13.798 0.768 12.324 0.539 0.423 0.064 CAS IXG 9
IXG CAK CAK C 0 1 Y N N N N N 12.702 0.582 13.169 -0.633 1.160 0.016 CAK IXG 10
IXG C5 C5 C 0 1 Y N N N N N 11.845 -0.504 12.941 -1.846 0.461 0.001 C5 IXG 11
IXG C6 C6 C 0 1 Y N N N N N 10.723 -0.723 13.792 -3.096 1.125 -0.047 C6 IXG 12
IXG NAE NAE N 0 1 N N N N N N 10.417 0.113 14.859 -3.165 2.501 -0.083 NAE IXG 13
IXG N1 N1 N 0 1 Y N N N N N 9.947 -1.782 13.411 -4.199 0.389 -0.057 N1 IXG 14
IXG C2 C2 C 0 1 Y N N N N N 10.197 -2.564 12.295 -4.142 -0.939 -0.023 C2 IXG 15
IXG NAD NAD N 0 1 N N N N N N 9.445 -3.651 11.958 -5.327 -1.652 -0.036 NAD IXG 16
IXG N3 N3 N 0 1 Y N N N N N 11.285 -2.392 11.547 -3.005 -1.607 0.022 N3 IXG 17
IXG C4 C4 C 0 1 Y N N N N N 12.076 -1.342 11.820 -1.832 -0.955 0.036 C4 IXG 18
IXG NAL NAL N 0 1 Y N N N N N 13.134 -1.173 10.999 -0.672 -1.610 0.082 NAL IXG 19
IXG CAJ CAJ C 0 1 Y N N N N N 13.968 -0.137 11.229 0.476 -0.971 0.091 CAJ IXG 20
IXG H1 H1 H 0 1 N N N N N N 16.904 4.273 8.449 6.206 -1.727 -0.171 H1 IXG 21
IXG H2 H2 H 0 1 N N N N N N 18.337 3.147 10.149 5.128 -0.944 -2.241 H2 IXG 22
IXG H3 H3 H 0 1 N N N N N N 17.292 2.060 12.111 3.050 0.369 -2.129 H3 IXG 23
IXG H4 H4 H 0 1 N N N N N N 14.437 4.093 8.637 5.213 -1.194 2.016 H4 IXG 24
IXG H5 H5 H 0 1 N N N N N N 13.401 2.986 10.589 3.134 0.117 2.140 H5 IXG 25
IXG H6 H6 H 0 1 N N N N N N 14.370 1.602 14.594 1.835 2.958 -0.836 H6 IXG 26
IXG H7 H7 H 0 1 N N N N N N 16.008 2.147 14.097 0.975 2.901 0.721 H7 IXG 27
IXG H8 H8 H 0 1 N N N N N N 14.618 3.282 14.009 2.753 2.830 0.683 H8 IXG 28
IXG H9 H9 H 0 1 N N N N N N 12.517 1.264 13.986 -0.613 2.240 -0.009 H9 IXG 29
IXG H10 H10 H 0 1 N N N N N N 9.562 -0.186 15.282 -2.350 3.028 -0.075 H10 IXG 30
IXG H11 H11 H 0 1 N N N N N N 11.154 0.075 15.534 -4.028 2.943 -0.116 H11 IXG 31
IXG H12 H12 H 0 1 N N N N N N 9.871 -4.125 11.187 -6.175 -1.182 -0.070 H12 IXG 32
IXG H13 H13 H 0 1 N N N N N N 9.387 -4.271 12.740 -5.310 -2.621 -0.012 H13 IXG 33
IXG H14 H14 H 0 1 N N N N N N 14.800 0.015 10.557 1.394 -1.539 0.129 H14 IXG 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IXG CAQ CAF DOUB Y N 1
IXG CAQ CAG SING Y N 2
IXG CAF CAH SING Y N 3
IXG CAG CAI DOUB Y N 4
IXG CAH CAR DOUB Y N 5
IXG NAL CAJ DOUB Y N 6
IXG NAL C4 SING Y N 7
IXG CAJ CAS SING Y N 8
IXG CAI CAR SING Y N 9
IXG CAR NAW SING N N 10
IXG N3 C4 DOUB Y N 11
IXG N3 C2 SING Y N 12
IXG C4 C5 SING Y N 13
IXG NAD C2 SING N N 14
IXG C2 N1 DOUB Y N 15
IXG CAS NAW SING N N 16
IXG CAS CAK DOUB Y N 17
IXG NAW CAC SING N N 18
IXG C5 CAK SING Y N 19
IXG C5 C6 DOUB Y N 20
IXG N1 C6 SING Y N 21
IXG C6 NAE SING N N 22
IXG CAQ H1 SING N N 23
IXG CAG H2 SING N N 24
IXG CAI H3 SING N N 25
IXG CAF H4 SING N N 26
IXG CAH H5 SING N N 27
IXG CAC H6 SING N N 28
IXG CAC H7 SING N N 29
IXG CAC H8 SING N N 30
IXG CAK H9 SING N N 31
IXG NAE H10 SING N N 32
IXG NAE H11 SING N N 33
IXG NAD H12 SING N N 34
IXG NAD H13 SING N N 35
IXG CAJ H14 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IXG SMILES ACDLabs 12.01 n1cc(cc2c1nc(nc2N)N)N(c3ccccc3)C
IXG InChI InChI 1.03 InChI=1S/C14H14N6/c1-20(9-5-3-2-4-6-9)10-7-11-12(15)18-14(16)19-13(11)17-8-10/h2-8H,1H3,(H4,15,16,17,18,19)
IXG InChIKey InChI 1.03 GPOMGDQKAATFBU-UHFFFAOYSA-N
IXG SMILES_CANONICAL CACTVS 3.370 CN(c1ccccc1)c2cnc3nc(N)nc(N)c3c2
IXG SMILES CACTVS 3.370 CN(c1ccccc1)c2cnc3nc(N)nc(N)c3c2
IXG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CN(c1ccccc1)c2cc3c(nc(nc3nc2)N)N
IXG SMILES "OpenEye OEToolkits" 1.7.6 CN(c1ccccc1)c2cc3c(nc(nc3nc2)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IXG "SYSTEMATIC NAME" ACDLabs 12.01 N~6~-methyl-N~6~-phenylpyrido[2,3-d]pyrimidine-2,4,6-triamine
IXG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N6-methyl-N6-phenyl-pyrido[2,3-d]pyrimidine-2,4,6-triamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IXG 'Create component' 2013-02-08 RCSB
IXG 'Initial release' 2013-05-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IXG CAQ C 3.000 -1.216 1
IXG CAG C 4.296 -1.971 2
IXG CAI C 5.598 -1.226 3
IXG CAF C 3.006 0.284 4
IXG CAH C 4.308 1.029 5
IXG CAR C 5.604 0.274 6
IXG NAW N 6.906 1.019 7
IXG CAC C 6.912 2.519 8
IXG CAS C 8.202 0.264 9
IXG CAK C 9.561 1.034 10
IXG C5 C 10.902 0.233 11
IXG C6 C 12.201 0.983 12
IXG NAE N 12.201 2.482 13
IXG N1 N 13.500 0.233 14
IXG C2 C 13.500 -1.268 15
IXG NAD N 14.799 -2.018 16
IXG N3 N 12.201 -2.018 17
IXG C4 C 10.902 -1.268 18
IXG NAL N 9.561 -2.070 19
IXG CAJ C 8.202 -1.299 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IXG CAQ CAF DOUBLE NONE 1
IXG CAQ CAG SINGLE NONE 2
IXG CAF CAH SINGLE NONE 3
IXG CAG CAI DOUBLE NONE 4
IXG CAH CAR DOUBLE NONE 5
IXG NAL CAJ DOUBLE NONE 6
IXG NAL C4 SINGLE NONE 7
IXG CAJ CAS SINGLE NONE 8
IXG CAI CAR SINGLE NONE 9
IXG CAR NAW SINGLE NONE 10
IXG N3 C4 SINGLE NONE 11
IXG N3 C2 DOUBLE NONE 12
IXG C4 C5 DOUBLE NONE 13
IXG NAD C2 SINGLE NONE 14
IXG C2 N1 SINGLE NONE 15
IXG CAS NAW SINGLE NONE 16
IXG CAS CAK DOUBLE NONE 17
IXG NAW CAC SINGLE NONE 18
IXG C5 CAK SINGLE NONE 19
IXG C5 C6 SINGLE NONE 20
IXG N1 C6 DOUBLE NONE 21
IXG C6 NAE SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IXG MurckoScaffold S1 scaffold c1ccc(Nc2cnc3ncncc3c2)cc1 InChI=1S/C13H10N4/c1-2-4-11(5-3-1)17-12-6-10-7-14-9-16-13(10)15-8-12/h1-9,17H MKXOHBRSPZVJPZ-UHFFFAOYSA-N
IXG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
IXG pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
IXG pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IXG CAQ S1 1
IXG CAG S1 1
IXG CAI S1 1
IXG CAF S1 1
IXG CAH S1 1
IXG CAR S1 1
IXG NAW S1 1
IXG CAS S1 1
IXG CAK S1 1
IXG C5 S1 1
IXG C6 S1 1
IXG N1 S1 1
IXG C2 S1 1
IXG N3 S1 1
IXG C4 S1 1
IXG NAL S1 1
IXG CAJ S1 1
IXG CAQ F1 1
IXG CAF F1 1
IXG CAH F1 1
IXG CAR F1 1
IXG CAI F1 1
IXG CAG F1 1
IXG C4 F2 1
IXG C5 F2 1
IXG CAK F2 1
IXG CAS F2 1
IXG CAJ F2 1
IXG NAL F2 1
IXG C5 F3 1
IXG C4 F3 1
IXG N3 F3 1
IXG C2 F3 1
IXG N1 F3 1
IXG C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IXG
_pdbe_chem_comp_rdkit_properties.exactmw 266.128
_pdbe_chem_comp_rdkit_properties.amw 266.308
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.071
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.535
_pdbe_chem_comp_rdkit_properties.tpsa 93.950
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.006
_pdbe_chem_comp_rdkit_properties.CrippenMR 75.161
_pdbe_chem_comp_rdkit_properties.chi0v 9.683
_pdbe_chem_comp_rdkit_properties.chi1v 5.210
_pdbe_chem_comp_rdkit_properties.chi2v 2.304
_pdbe_chem_comp_rdkit_properties.chi3v 2.304
_pdbe_chem_comp_rdkit_properties.chi4v 1.444
_pdbe_chem_comp_rdkit_properties.chi0n 23.683
_pdbe_chem_comp_rdkit_properties.chi1n 11.999
_pdbe_chem_comp_rdkit_properties.chi2n 2.304
_pdbe_chem_comp_rdkit_properties.chi3n 2.304
_pdbe_chem_comp_rdkit_properties.chi4n 1.444
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.890
_pdbe_chem_comp_rdkit_properties.kappa1 4.051
_pdbe_chem_comp_rdkit_properties.kappa2 4.655
_pdbe_chem_comp_rdkit_properties.kappa3 2.071
_pdbe_chem_comp_rdkit_properties.Phi 0.943
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IXG UniChem ZINC ZINC000095921391
IXG UniChem PubChem 71307952
IXG UniChem BindingDb 50433817
IXG UniChem BRENDA 220747
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IXG CAQ -4.450 1.323 0.438 ETKDGv3 1
IXG CAG -3.220 1.434 1.246 ETKDGv3 2
IXG CAI -2.249 0.522 1.119 ETKDGv3 3
IXG CAF -4.596 0.308 -0.421 ETKDGv3 4
IXG CAH -3.526 -0.702 -0.566 ETKDGv3 5
IXG CAR -2.395 -0.611 0.164 ETKDGv3 6
IXG NAW -1.333 -1.584 0.030 ETKDGv3 7
IXG CAC -1.632 -2.971 -0.346 ETKDGv3 8
IXG CAS 0.043 -1.171 0.137 ETKDGv3 9
IXG CAK 0.501 -0.122 -0.567 ETKDGv3 10
IXG C5 1.921 0.297 -0.444 ETKDGv3 11
IXG C6 2.507 1.449 -1.188 ETKDGv3 12
IXG NAE 1.731 2.252 -2.082 ETKDGv3 13
IXG N1 3.766 1.737 -1.020 ETKDGv3 14
IXG C2 4.603 0.977 -0.135 ETKDGv3 15
IXG NAD 5.976 1.326 0.021 ETKDGv3 16
IXG N3 4.108 -0.028 0.524 ETKDGv3 17
IXG C4 2.729 -0.399 0.383 ETKDGv3 18
IXG NAL 2.216 -1.513 1.131 ETKDGv3 19
IXG CAJ 0.975 -1.891 1.034 ETKDGv3 20
IXG H1 -5.232 2.063 0.544 ETKDGv3 21
IXG H2 -3.108 2.253 1.944 ETKDGv3 22
IXG H3 -1.357 0.609 1.726 ETKDGv3 23
IXG H4 -5.497 0.226 -1.014 ETKDGv3 24
IXG H5 -3.667 -1.499 -1.283 ETKDGv3 25
IXG H6 -1.764 -3.038 -1.446 ETKDGv3 26
IXG H7 -2.559 -3.315 0.160 ETKDGv3 27
IXG H8 -0.810 -3.656 -0.052 ETKDGv3 28
IXG H9 -0.176 0.399 -1.227 ETKDGv3 29
IXG H10 0.717 2.088 -2.251 ETKDGv3 30
IXG H11 2.181 3.047 -2.589 ETKDGv3 31
IXG H12 6.594 0.781 0.662 ETKDGv3 32
IXG H13 6.376 2.133 -0.507 ETKDGv3 33
IXG H14 0.627 -2.726 1.627 ETKDGv3 34
#