data_ITZ
#
_chem_comp.id ITZ
_chem_comp.name '2-[(1S,2S)-1-amino-2-methylbutyl]-1,3-thiazole-4-carboxylic acid'
_chem_comp.type peptide-like
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H14 N2 O2 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-04
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 214.285
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ITZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6V4I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ITZ N N N 0 1 N N N Y Y N -27.310 -27.948 29.513 2.045 1.337 -1.513 N ITZ 1
ITZ CA CA C 0 1 N N S Y N N -28.100 -27.141 28.588 1.502 0.116 -0.902 CA ITZ 2
ITZ CB CB C 0 1 N N S N N N -27.666 -27.363 27.125 2.417 -0.332 0.240 CB ITZ 3
ITZ CG1 CG1 C 0 1 N N N N N N -28.411 -26.402 26.198 3.817 -0.616 -0.310 CG1 ITZ 4
ITZ CG2 CG2 C 0 1 N N N N N N -27.912 -28.806 26.709 1.852 -1.604 0.877 CG2 ITZ 5
ITZ CD1 CD1 C 0 1 N N N N N N -27.922 -24.973 26.288 4.762 -0.943 0.848 CD1 ITZ 6
ITZ CB1 CB1 C 0 1 Y N N Y N N -29.565 -27.441 28.810 0.124 0.395 -0.361 CB1 ITZ 7
ITZ NG1 NG1 N 0 1 Y N N Y N N -30.027 -28.606 29.173 -0.895 -0.373 -0.519 NG1 ITZ 8
ITZ SG1 SG1 S 0 1 Y N N N N N -30.784 -26.223 28.597 -0.301 1.773 0.555 SG1 ITZ 9
ITZ CD3 CD3 C 0 1 Y N N Y N N -31.405 -28.561 29.295 -2.033 0.048 0.038 CD3 ITZ 10
ITZ CD2 CD2 C 0 1 Y N N N N N -31.977 -27.366 29.025 -1.916 1.230 0.686 CD2 ITZ 11
ITZ C CJ C 0 1 N N N Y N Y -32.173 -29.766 29.700 -3.296 -0.703 -0.043 CJ ITZ 12
ITZ O O O 0 1 N N N Y N Y -33.396 -29.736 29.813 -4.299 -0.265 0.486 O ITZ 13
ITZ H H1 H 0 1 N N N Y Y N -27.618 -27.779 30.449 1.494 1.617 -2.311 H1 ITZ 14
ITZ H2 H2 H 0 1 N Y N Y Y N -27.426 -28.917 29.293 2.108 2.083 -0.837 H2 ITZ 15
ITZ HA HA H 0 1 N N N Y N N -27.935 -26.079 28.823 1.445 -0.672 -1.653 HA ITZ 16
ITZ HB HB H 0 1 N N N N N N -26.588 -27.155 27.049 2.474 0.456 0.991 HB ITZ 17
ITZ HG12 HG12 H 0 0 N N N N N N -29.479 -26.422 26.462 3.773 -1.463 -0.994 HG12 ITZ 18
ITZ HG11 HG11 H 0 0 N N N N N N -28.283 -26.749 25.162 4.183 0.262 -0.841 HG11 ITZ 19
ITZ HG23 HG23 H 0 0 N N N N N N -27.369 -29.481 27.387 2.504 -1.923 1.690 HG23 ITZ 20
ITZ HG21 HG21 H 0 0 N N N N N N -28.989 -29.024 26.760 0.855 -1.401 1.268 HG21 ITZ 21
ITZ HG22 HG22 H 0 0 N N N N N N -27.556 -28.956 25.679 1.795 -2.392 0.126 HG22 ITZ 22
ITZ HD11 HD11 H 0 0 N N N N N N -28.501 -24.343 25.597 4.805 -0.096 1.533 HD11 ITZ 23
ITZ HD12 HD12 H 0 0 N N N N N N -28.052 -24.605 27.316 4.396 -1.822 1.379 HD12 ITZ 24
ITZ HD13 HD13 H 0 0 N N N N N N -26.857 -24.932 26.016 5.759 -1.145 0.456 HD13 ITZ 25
ITZ HQ HQ H 0 1 N N N N N N -33.037 -27.164 29.073 -2.712 1.745 1.204 HQ ITZ 26
ITZ OXT OXT O 0 1 N Y N Y N Y -31.440 -30.864 29.927 -3.340 -1.877 -0.704 OXT ITZ 27
ITZ HXT HXT H 0 1 N Y N Y N Y -32.011 -31.580 30.179 -4.192 -2.334 -0.730 HXT ITZ 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ITZ CG1 CD1 SING N N 1
ITZ CG1 CB SING N N 2
ITZ CG2 CB SING N N 3
ITZ CB CA SING N N 4
ITZ CA CB1 SING N N 5
ITZ CA N SING N N 6
ITZ SG1 CB1 SING Y N 7
ITZ SG1 CD2 SING Y N 8
ITZ CB1 NG1 DOUB Y N 9
ITZ CD2 CD3 DOUB Y N 10
ITZ NG1 CD3 SING Y N 11
ITZ CD3 C SING N N 12
ITZ C O DOUB N N 13
ITZ N H SING N N 14
ITZ N H2 SING N N 15
ITZ CA HA SING N N 16
ITZ CB HB SING N N 17
ITZ CG1 HG12 SING N N 18
ITZ CG1 HG11 SING N N 19
ITZ CG2 HG23 SING N N 20
ITZ CG2 HG21 SING N N 21
ITZ CG2 HG22 SING N N 22
ITZ CD1 HD11 SING N N 23
ITZ CD1 HD12 SING N N 24
ITZ CD1 HD13 SING N N 25
ITZ CD2 HQ SING N N 26
ITZ C OXT SING N N 27
ITZ OXT HXT SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ITZ SMILES ACDLabs 12.01 'NC(c1nc(C(=O)O)cs1)C(CC)C'
ITZ InChI InChI 1.03 'InChI=1S/C9H14N2O2S/c1-3-5(2)7(10)8-11-6(4-14-8)9(12)13/h4-5,7H,3,10H2,1-2H3,(H,12,13)/t5-,7-/m0/s1'
ITZ InChIKey InChI 1.03 FONDEYGOPBRTIE-FSPLSTOPSA-N
ITZ SMILES_CANONICAL CACTVS 3.385 'CC[C@H](C)[C@H](N)c1scc(n1)C(O)=O'
ITZ SMILES CACTVS 3.385 'CC[CH](C)[CH](N)c1scc(n1)C(O)=O'
ITZ SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC[C@H](C)[C@@H](c1nc(cs1)C(=O)O)N'
ITZ SMILES 'OpenEye OEToolkits' 2.0.7 'CCC(C)C(c1nc(cs1)C(=O)O)N'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ITZ 'SYSTEMATIC NAME' ACDLabs 12.01 '2-[(1S,2S)-1-amino-2-methylbutyl]-1,3-thiazole-4-carboxylic acid'
ITZ 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '2-[(1~{S},2~{S})-1-azanyl-2-methyl-butyl]-1,3-thiazole-4-carboxylic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ITZ 'Create component' 2019-12-04 RCSB
ITZ 'Initial release' 2020-12-02 RCSB
ITZ 'Modify backbone' 2023-11-03 PDBE
ITZ 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ITZ
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ITZ N N 10.591 -1.658 1
ITZ CA C 10.280 -0.191 2
ITZ CB C 11.394 0.813 3
ITZ CG1 C 12.821 0.349 4
ITZ CG2 C 11.082 2.280 5
ITZ CD1 C 13.935 1.353 6
ITZ CB1 C 8.853 0.273 7
ITZ NG1 N 7.639 -0.609 8
ITZ SG1 S 8.389 1.699 9
ITZ CD3 C 6.426 0.273 10
ITZ CD2 C 6.889 1.699 11
ITZ C C 4.999 -0.191 12
ITZ O O 3.884 0.813 13
ITZ OXT O 4.687 -1.658 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ITZ CG1 CD1 SINGLE NONE 1
ITZ CG1 CB SINGLE NONE 2
ITZ CB CG2 SINGLE BEGINWEDGE 3
ITZ CB CA SINGLE NONE 4
ITZ CA CB1 SINGLE NONE 5
ITZ CA N SINGLE BEGINDASH 6
ITZ SG1 CB1 SINGLE NONE 7
ITZ SG1 CD2 SINGLE NONE 8
ITZ CB1 NG1 DOUBLE NONE 9
ITZ CD2 CD3 DOUBLE NONE 10
ITZ NG1 CD3 SINGLE NONE 11
ITZ CD3 C SINGLE NONE 12
ITZ C O DOUBLE NONE 13
ITZ C OXT SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ITZ MurckoScaffold S1 scaffold c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
ITZ thiazole F1 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ITZ CB1 S1 1
ITZ NG1 S1 1
ITZ SG1 S1 1
ITZ CD3 S1 1
ITZ CD2 S1 1
ITZ CD2 F1 1
ITZ CD3 F1 1
ITZ NG1 F1 1
ITZ CB1 F1 1
ITZ SG1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ITZ
_pdbe_chem_comp_rdkit_properties.exactmw 214.078
_pdbe_chem_comp_rdkit_properties.amw 214.290
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.649
_pdbe_chem_comp_rdkit_properties.tpsa 76.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.778
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.925
_pdbe_chem_comp_rdkit_properties.chi0v 7.436
_pdbe_chem_comp_rdkit_properties.chi1v 4.054
_pdbe_chem_comp_rdkit_properties.chi2v 1.989
_pdbe_chem_comp_rdkit_properties.chi3v 1.989
_pdbe_chem_comp_rdkit_properties.chi4v 1.257
_pdbe_chem_comp_rdkit_properties.chi0n 20.619
_pdbe_chem_comp_rdkit_properties.chi1n 10.040
_pdbe_chem_comp_rdkit_properties.chi2n 1.215
_pdbe_chem_comp_rdkit_properties.chi3n 1.215
_pdbe_chem_comp_rdkit_properties.chi4n 0.599
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.940
_pdbe_chem_comp_rdkit_properties.kappa1 2.594
_pdbe_chem_comp_rdkit_properties.kappa2 4.523
_pdbe_chem_comp_rdkit_properties.kappa3 2.300
_pdbe_chem_comp_rdkit_properties.Phi 0.838
#
_pdbe_chem_comp_external_mappings.comp_id ITZ
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155804447
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ITZ N -0.037 -2.302 -0.341 ETKDGv3 1
ITZ CA -0.289 -0.958 -0.869 ETKDGv3 2
ITZ CB -1.287 -0.184 0.040 ETKDGv3 3
ITZ CG1 -2.610 -0.978 0.198 ETKDGv3 4
ITZ CG2 -1.566 1.224 -0.528 ETKDGv3 5
ITZ CD1 -3.549 -0.383 1.250 ETKDGv3 6
ITZ CB1 1.017 -0.221 -1.029 ETKDGv3 7
ITZ NG1 1.789 0.082 -0.034 ETKDGv3 8
ITZ SG1 1.672 0.335 -2.587 ETKDGv3 9
ITZ CD3 2.974 0.789 -0.438 ETKDGv3 10
ITZ CD2 3.087 1.015 -1.751 ETKDGv3 11
ITZ C 3.975 1.223 0.547 ETKDGv3 12
ITZ O 5.011 1.842 0.181 ETKDGv3 13
ITZ H 0.455 -2.230 0.580 ETKDGv3 14
ITZ H2 0.598 -2.812 -0.999 ETKDGv3 15
ITZ HA -0.750 -1.065 -1.877 ETKDGv3 16
ITZ HB -0.824 -0.066 1.045 ETKDGv3 17
ITZ HG12 -2.387 -2.019 0.517 ETKDGv3 18
ITZ HG11 -3.141 -1.035 -0.777 ETKDGv3 19
ITZ HG23 -2.065 1.154 -1.518 ETKDGv3 20
ITZ HG21 -2.208 1.808 0.161 ETKDGv3 21
ITZ HG22 -0.625 1.800 -0.643 ETKDGv3 22
ITZ HD11 -3.988 0.571 0.894 ETKDGv3 23
ITZ HD12 -3.007 -0.212 2.205 ETKDGv3 24
ITZ HD13 -4.384 -1.090 1.441 ETKDGv3 25
ITZ HQ 3.909 1.531 -2.230 ETKDGv3 26
ITZ OXT 3.777 0.946 1.896 ETKDGv3 27
ITZ HXT 4.454 1.236 2.591 ETKDGv3 28
#