data_ISM
#
_chem_comp.id ISM
_chem_comp.name '5-AMINO-2-(2-METHOXY-2-OXOETHYL)BENZOIC ACID'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C10 H11 N O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-08-24
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 209.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ISM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2XOW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ISM O1 O1 O 0 1 N N N N N N 13.286 -9.934 47.623 -1.067 -1.838 -0.496 O1 ISM 1
ISM C1 C1 C 0 1 N N N N N N 13.824 -9.026 48.235 0.108 -1.844 -0.189 C1 ISM 2
ISM C2 C2 C 0 1 Y N N N N N 14.696 -9.222 49.310 0.880 -0.585 -0.197 C2 ISM 3
ISM C3 C3 C 0 1 Y N N N N N 15.212 -10.493 49.581 2.196 -0.568 0.269 C3 ISM 4
ISM C4 C4 C 0 1 Y N N N N N 16.094 -10.694 50.644 2.914 0.618 0.259 C4 ISM 5
ISM N1 N1 N 0 1 N N N N N N 16.565 -11.900 50.915 4.231 0.641 0.724 N1 ISM 6
ISM C5 C5 C 0 1 Y N N N N N 16.505 -9.626 51.419 2.324 1.784 -0.214 C5 ISM 7
ISM C6 C6 C 0 1 Y N N N N N 16.008 -8.360 51.139 1.021 1.767 -0.675 C6 ISM 8
ISM C7 C7 C 0 1 Y N N N N N 15.137 -8.133 50.076 0.299 0.591 -0.675 C7 ISM 9
ISM C8 C8 C 0 1 N N N N N N 14.706 -6.788 49.911 -1.119 0.577 -1.184 C8 ISM 10
ISM C9 C9 C 0 1 N N N N N N 13.375 -6.515 49.170 -2.073 0.620 -0.018 C9 ISM 11
ISM O2 O2 O 0 1 N N N N N N 12.396 -7.247 49.300 -1.645 0.658 1.111 O2 ISM 12
ISM O3 O3 O 0 1 N N N N N N 13.351 -5.383 48.395 -3.398 0.616 -0.234 O3 ISM 13
ISM C10 C10 C 0 1 N N N N N N 12.088 -5.260 47.734 -4.256 0.660 0.937 C10 ISM 14
ISM OX0 OX0 O 0 1 N Y N N N N 14.568 -8.342 47.255 0.706 -2.999 0.163 OX0 ISM 15
ISM HX0 HX0 H 0 1 N N N N N N 14.448 -8.765 46.413 0.158 -3.796 0.157 HX0 ISM 16
ISM H3 H3 H 0 1 N N N N N N 14.925 -11.329 48.961 2.652 -1.475 0.637 H3 ISM 17
ISM H11N H11N H 0 0 N N N N N N 16.684 -12.411 50.064 4.643 -0.173 1.054 H11N ISM 18
ISM H12N H12N H 0 0 N N N N N N 17.447 -11.817 51.379 4.734 1.470 0.716 H12N ISM 19
ISM H5 H5 H 0 1 N N N N N N 17.202 -9.774 52.230 2.885 2.707 -0.222 H5 ISM 20
ISM H6 H6 H 0 1 N N N N N N 16.305 -7.529 51.762 0.567 2.676 -1.041 H6 ISM 21
ISM H81C H81C H 0 0 N N N N N N 14.590 -6.372 50.923 -1.285 1.446 -1.821 H81C ISM 22
ISM H82C H82C H 0 0 N N N N N N 15.473 -6.335 49.266 -1.290 -0.333 -1.759 H82C ISM 23
ISM H101 H101 H 0 0 N N N N N N 11.283 -5.228 48.483 -5.300 0.651 0.622 H101 ISM 24
ISM H102 H102 H 0 0 N N N N N N 12.073 -4.334 47.141 -4.059 -0.210 1.564 H102 ISM 25
ISM H103 H103 H 0 0 N N N N N N 11.937 -6.124 47.070 -4.054 1.569 1.502 H103 ISM 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ISM O1 C1 DOUB N N 1
ISM C1 C2 SING N N 2
ISM C1 OX0 SING N N 3
ISM C2 C3 SING Y N 4
ISM C2 C7 DOUB Y N 5
ISM C3 C4 DOUB Y N 6
ISM C4 N1 SING N N 7
ISM C4 C5 SING Y N 8
ISM C5 C6 DOUB Y N 9
ISM C6 C7 SING Y N 10
ISM C7 C8 SING N N 11
ISM C8 C9 SING N N 12
ISM C9 O2 DOUB N N 13
ISM C9 O3 SING N N 14
ISM O3 C10 SING N N 15
ISM OX0 HX0 SING N N 16
ISM C3 H3 SING N N 17
ISM N1 H11N SING N N 18
ISM N1 H12N SING N N 19
ISM C5 H5 SING N N 20
ISM C6 H6 SING N N 21
ISM C8 H81C SING N N 22
ISM C8 H82C SING N N 23
ISM C10 H101 SING N N 24
ISM C10 H102 SING N N 25
ISM C10 H103 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ISM SMILES ACDLabs 10.04 'O=C(O)c1cc(N)ccc1CC(=O)OC'
ISM SMILES_CANONICAL CACTVS 3.352 'COC(=O)Cc1ccc(N)cc1C(O)=O'
ISM SMILES CACTVS 3.352 'COC(=O)Cc1ccc(N)cc1C(O)=O'
ISM SMILES_CANONICAL 'OpenEye OEToolkits' 1.6.1 'COC(=O)Cc1ccc(cc1C(=O)O)N'
ISM SMILES 'OpenEye OEToolkits' 1.6.1 'COC(=O)Cc1ccc(cc1C(=O)O)N'
ISM InChI InChI 1.03 'InChI=1S/C10H11NO4/c1-15-9(12)4-6-2-3-7(11)5-8(6)10(13)14/h2-3,5H,4,11H2,1H3,(H,13,14)'
ISM InChIKey InChI 1.03 NRWKEWXVSUGTJF-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ISM 'SYSTEMATIC NAME' ACDLabs 10.04 '5-amino-2-(2-methoxy-2-oxoethyl)benzoic acid'
ISM 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.6.1 '5-amino-2-(2-methoxy-2-oxo-ethyl)benzoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ISM 'Create component' 2010-08-24 EBI
ISM 'Modify aromatic_flag' 2011-06-04 RCSB
ISM 'Modify descriptor' 2011-06-04 RCSB
ISM 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 ISM HIS None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C8 NE2 ? ?
2 ISM SER None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C1 OG ? ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ISM O1 O 10.794 2.625 1
ISM C1 C 9.495 1.875 2
ISM C2 C 9.495 0.375 3
ISM C3 C 10.794 -0.375 4
ISM C4 C 10.794 -1.875 5
ISM N1 N 12.093 -2.625 6
ISM C5 C 9.495 -2.625 7
ISM C6 C 8.196 -1.875 8
ISM C7 C 8.196 -0.375 9
ISM C8 C 6.897 0.375 10
ISM C9 C 5.598 -0.375 11
ISM O2 O 5.598 -1.875 12
ISM O3 O 4.299 0.375 13
ISM C10 C 3.000 -0.375 14
ISM OX0 O 8.196 2.625 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ISM O1 C1 DOUBLE NONE 1
ISM C1 C2 SINGLE NONE 2
ISM C1 OX0 SINGLE NONE 3
ISM C2 C3 DOUBLE NONE 4
ISM C2 C7 SINGLE NONE 5
ISM C3 C4 SINGLE NONE 6
ISM C4 N1 SINGLE NONE 7
ISM C4 C5 DOUBLE NONE 8
ISM C5 C6 SINGLE NONE 9
ISM C6 C7 DOUBLE NONE 10
ISM C7 C8 SINGLE NONE 11
ISM C8 C9 SINGLE NONE 12
ISM C9 O2 DOUBLE NONE 13
ISM C9 O3 SINGLE NONE 14
ISM O3 C10 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ISM MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ISM phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ISM C2 S1 1
ISM C3 S1 1
ISM C4 S1 1
ISM C5 S1 1
ISM C6 S1 1
ISM C7 S1 1
ISM C2 F1 1
ISM C3 F1 1
ISM C4 F1 1
ISM C5 F1 1
ISM C6 F1 1
ISM C7 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ISM
_pdbe_chem_comp_rdkit_properties.exactmw 209.069
_pdbe_chem_comp_rdkit_properties.amw 209.201
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 102.119
_pdbe_chem_comp_rdkit_properties.tpsa 89.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.192
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.178
_pdbe_chem_comp_rdkit_properties.chi0v 7.080
_pdbe_chem_comp_rdkit_properties.chi1v 3.494
_pdbe_chem_comp_rdkit_properties.chi2v 1.323
_pdbe_chem_comp_rdkit_properties.chi3v 1.323
_pdbe_chem_comp_rdkit_properties.chi4v 0.771
_pdbe_chem_comp_rdkit_properties.chi0n 18.080
_pdbe_chem_comp_rdkit_properties.chi1n 8.797
_pdbe_chem_comp_rdkit_properties.chi2n 1.323
_pdbe_chem_comp_rdkit_properties.chi3n 1.323
_pdbe_chem_comp_rdkit_properties.chi4n 0.771
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.040
_pdbe_chem_comp_rdkit_properties.kappa1 3.229
_pdbe_chem_comp_rdkit_properties.kappa2 4.454
_pdbe_chem_comp_rdkit_properties.kappa3 2.701
_pdbe_chem_comp_rdkit_properties.Phi 0.959
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ISM UniChem ZINC ZINC000058649990
ISM UniChem SureChEMBL SCHEMBL7333692
ISM UniChem PubChem 14501048
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ISM O1 -0.531 2.018 -1.785 ETKDGv3 1
ISM C1 -0.513 0.787 -1.510 ETKDGv3 2
ISM C2 0.588 0.226 -0.688 ETKDGv3 3
ISM C3 1.809 0.792 -0.774 ETKDGv3 4
ISM C4 2.953 0.260 -0.004 ETKDGv3 5
ISM N1 4.241 0.870 -0.128 ETKDGv3 6
ISM C5 2.777 -0.794 0.800 ETKDGv3 7
ISM C6 1.446 -1.412 0.933 ETKDGv3 8
ISM C7 0.390 -0.945 0.237 ETKDGv3 9
ISM C8 -0.971 -1.556 0.488 ETKDGv3 10
ISM C9 -1.858 -0.594 1.214 ETKDGv3 11
ISM O2 -1.589 -0.272 2.404 ETKDGv3 12
ISM O3 -2.972 -0.055 0.564 ETKDGv3 13
ISM C10 -3.835 0.892 1.182 ETKDGv3 14
ISM OX0 -1.512 -0.034 -2.020 ETKDGv3 15
ISM HX0 -2.260 0.347 -2.588 ETKDGv3 16
ISM H3 1.980 1.636 -1.432 ETKDGv3 17
ISM H11N 4.380 1.692 -0.757 ETKDGv3 18
ISM H12N 5.063 0.507 0.406 ETKDGv3 19
ISM H5 3.604 -1.197 1.370 ETKDGv3 20
ISM H6 1.334 -2.238 1.625 ETKDGv3 21
ISM H81C -1.436 -1.873 -0.466 ETKDGv3 22
ISM H82C -0.893 -2.482 1.099 ETKDGv3 23
ISM H101 -3.264 1.805 1.455 ETKDGv3 24
ISM H102 -4.295 0.450 2.092 ETKDGv3 25
ISM H103 -4.639 1.170 0.470 ETKDGv3 26
#