data_IS6
#
_chem_comp.id IS6
_chem_comp.name (2R)-N-(3-bromanylprop-2-ynyl)-1-ethanoyl-pyrrolidine-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 Br N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-04-12
_chem_comp.pdbx_modified_date 2022-11-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 273.126
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IS6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZFU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IS6 C4 C1 C 0 1 N N N N N N -10.632 -2.994 -2.283 3.776 2.343 0.399 C4 IS6 1
IS6 C5 C2 C 0 1 N N N N N N -10.681 -4.368 -1.670 2.503 2.140 -0.464 C5 IS6 2
IS6 C6 C3 C 0 1 N N R N N N -11.880 -4.247 -0.730 2.437 0.607 -0.628 C6 IS6 3
IS6 C7 C4 C 0 1 N N N N N N -12.347 -5.616 -0.205 1.490 0.023 0.388 C7 IS6 4
IS6 C8 C5 C 0 1 N N N N N N -10.612 -5.417 1.535 -0.760 -0.504 1.161 C8 IS6 5
IS6 C9 C6 C 0 1 N N N N N N -10.941 -5.713 3.007 -2.146 -0.334 0.695 C9 IS6 6
IS6 C10 C7 C 0 1 N N N N N N -11.968 -6.509 3.818 -3.251 -0.199 0.323 C10 IS6 7
IS6 N1 N1 N 0 1 N N N N N N -12.819 -3.471 -1.553 3.793 0.086 -0.406 N1 IS6 8
IS6 N2 N2 N 0 1 N N N N N N -11.466 -6.242 0.611 0.160 0.064 0.172 N2 IS6 9
IS6 C3 C8 C 0 1 N N N N N N -12.088 -2.586 -2.476 4.698 1.219 -0.138 C3 IS6 10
IS6 C1 C9 C 0 1 N N N N N N -15.103 -3.138 -2.473 5.584 -1.607 -0.192 C1 IS6 11
IS6 C2 C10 C 0 1 N N N N N N -14.146 -3.644 -1.402 4.151 -1.213 -0.440 C2 IS6 12
IS6 O1 O1 O 0 1 N N N N N N -14.495 -4.307 -0.427 3.319 -2.065 -0.670 O1 IS6 13
IS6 O2 O2 O 0 1 N N N N N N -13.450 -6.101 -0.479 1.925 -0.485 1.400 O2 IS6 14
IS6 BR1 BR1 BR 0 0 N N N N N N -13.393 -7.709 4.537 -5.040 0.020 -0.279 BR1 IS6 15
IS6 H1 H1 H 0 1 N N N N N N -10.109 -3.022 -3.250 4.215 3.325 0.223 H1 IS6 16
IS6 H2 H2 H 0 1 N N N N N N -10.121 -2.290 -1.610 3.559 2.198 1.457 H2 IS6 17
IS6 H3 H3 H 0 1 N N N N N N -10.847 -5.142 -2.434 1.620 2.510 0.059 H3 IS6 18
IS6 H4 H4 H 0 1 N N N N N N -9.758 -4.592 -1.115 2.612 2.628 -1.432 H4 IS6 19
IS6 H5 H5 H 0 1 N N N N N N -11.577 -3.637 0.134 2.101 0.356 -1.634 H5 IS6 20
IS6 H6 H6 H 0 1 N N N N N N -9.553 -5.651 1.350 -0.632 0.009 2.114 H6 IS6 21
IS6 H7 H7 H 0 1 N N N N N N -10.793 -4.351 1.334 -0.547 -1.565 1.288 H7 IS6 22
IS6 H12 H12 H 0 1 N N N N N N -11.384 -7.239 0.600 -0.187 0.470 -0.637 H12 IS6 23
IS6 H13 H13 H 0 1 N N N N N N -12.239 -1.529 -2.210 5.189 1.538 -1.057 H13 IS6 24
IS6 H14 H14 H 0 1 N N N N N N -12.408 -2.751 -3.515 5.438 0.944 0.614 H14 IS6 25
IS6 H15 H15 H 0 1 N N N N N N -16.127 -3.458 -2.231 6.179 -0.713 -0.005 H15 IS6 26
IS6 H16 H16 H 0 1 N N N N N N -15.062 -2.039 -2.512 5.635 -2.266 0.674 H16 IS6 27
IS6 H17 H17 H 0 1 N N N N N N -14.811 -3.551 -3.450 5.975 -2.127 -1.067 H17 IS6 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IS6 C3 C4 SING N N 1
IS6 C3 N1 SING N N 2
IS6 C1 C2 SING N N 3
IS6 C4 C5 SING N N 4
IS6 C5 C6 SING N N 5
IS6 N1 C2 SING N N 6
IS6 N1 C6 SING N N 7
IS6 C2 O1 DOUB N N 8
IS6 C6 C7 SING N N 9
IS6 O2 C7 DOUB N N 10
IS6 C7 N2 SING N N 11
IS6 N2 C8 SING N N 12
IS6 C8 C9 SING N N 13
IS6 C9 C10 TRIP N N 14
IS6 C10 BR1 SING N N 15
IS6 C4 H1 SING N N 16
IS6 C4 H2 SING N N 17
IS6 C5 H3 SING N N 18
IS6 C5 H4 SING N N 19
IS6 C6 H5 SING N N 20
IS6 C8 H6 SING N N 21
IS6 C8 H7 SING N N 22
IS6 N2 H12 SING N N 23
IS6 C3 H13 SING N N 24
IS6 C3 H14 SING N N 25
IS6 C1 H15 SING N N 26
IS6 C1 H16 SING N N 27
IS6 C1 H17 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IS6 InChI InChI 1.06 InChI=1S/C10H13BrN2O2/c1-8(14)13-7-2-4-9(13)10(15)12-6-3-5-11/h9H,2,4,6-7H2,1H3,(H,12,15)/t9-/m1/s1
IS6 InChIKey InChI 1.06 KFRJPJBTQUXTFP-SECBINFHSA-N
IS6 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCC[C@@H]1C(=O)NCC#CBr"
IS6 SMILES CACTVS 3.385 "CC(=O)N1CCC[CH]1C(=O)NCC#CBr"
IS6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC[C@@H]1C(=O)NCC#CBr"
IS6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCCC1C(=O)NCC#CBr"
#
_pdbx_chem_comp_identifier.comp_id IS6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier (2~{R})-~{N}-(3-bromanylprop-2-ynyl)-1-ethanoyl-pyrrolidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IS6 'Create component' 2022-04-12 PDBE
IS6 'Modify descriptor' 2022-08-22 RCSB
IS6 'Initial release' 2022-11-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IS6 C4 C 3.549 1.449 1
IS6 C5 C 5.049 1.449 2
IS6 C6 C 5.513 0.022 3
IS6 C7 C 6.939 -0.442 4
IS6 C8 C 9.480 0.099 5
IS6 C9 C 10.595 1.102 6
IS6 C10 C 11.710 2.106 7
IS6 N1 N 4.299 -0.860 8
IS6 N2 N 8.054 0.562 9
IS6 C3 C 3.086 0.022 10
IS6 C1 C 5.598 -3.110 11
IS6 C2 C 4.299 -2.360 12
IS6 O1 O 3.000 -3.110 13
IS6 O2 O 7.251 -1.909 14
IS6 BR1 Br 12.825 3.110 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IS6 C3 C4 SINGLE NONE 1
IS6 C3 N1 SINGLE NONE 2
IS6 C1 C2 SINGLE NONE 3
IS6 C4 C5 SINGLE NONE 4
IS6 C5 C6 SINGLE NONE 5
IS6 N1 C2 SINGLE NONE 6
IS6 N1 C6 SINGLE NONE 7
IS6 C2 O1 DOUBLE NONE 8
IS6 C6 C7 SINGLE BEGINDASH 9
IS6 O2 C7 DOUBLE NONE 10
IS6 C7 N2 SINGLE NONE 11
IS6 N2 C8 SINGLE NONE 12
IS6 C8 C9 SINGLE NONE 13
IS6 C9 C10 TRIPLE NONE 14
IS6 C10 BR1 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IS6 MurckoScaffold S1 scaffold C1CCNC1 InChI=1S/C4H9N/c1-2-4-5-3-1/h5H,1-4H2 RWRDLPDLKQPQOW-UHFFFAOYSA-N
IS6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
IS6 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IS6 C4 S1 1
IS6 C5 S1 1
IS6 C6 S1 1
IS6 N1 S1 1
IS6 C3 S1 1
IS6 N1 F1 1
IS6 C2 F1 1
IS6 O1 F1 1
IS6 C1 F1 1
IS6 N2 F1 2
IS6 C7 F1 2
IS6 O2 F1 2
IS6 C6 F1 2
IS6 O2 F2 1
IS6 C7 F2 1
IS6 C6 F2 1
IS6 N1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IS6
_pdbe_chem_comp_rdkit_properties.exactmw 272.016
_pdbe_chem_comp_rdkit_properties.amw 273.130
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 115.840
_pdbe_chem_comp_rdkit_properties.tpsa 49.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.469
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.122
_pdbe_chem_comp_rdkit_properties.chi0v 8.675
_pdbe_chem_comp_rdkit_properties.chi1v 4.258
_pdbe_chem_comp_rdkit_properties.chi2v 1.437
_pdbe_chem_comp_rdkit_properties.chi3v 1.437
_pdbe_chem_comp_rdkit_properties.chi4v 0.798
_pdbe_chem_comp_rdkit_properties.chi0n 20.089
_pdbe_chem_comp_rdkit_properties.chi1n 9.912
_pdbe_chem_comp_rdkit_properties.chi2n 1.238
_pdbe_chem_comp_rdkit_properties.chi3n 1.238
_pdbe_chem_comp_rdkit_properties.chi4n 0.709
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.020
_pdbe_chem_comp_rdkit_properties.kappa1 3.236
_pdbe_chem_comp_rdkit_properties.kappa2 5.762
_pdbe_chem_comp_rdkit_properties.kappa3 3.239
_pdbe_chem_comp_rdkit_properties.Phi 1.243
#
_pdbe_chem_comp_external_mappings.comp_id IS6
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 165430641
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IS6 C4 -1.647 -1.030 1.419 ETKDGv3 1
IS6 C5 -0.802 -2.118 0.758 ETKDGv3 2
IS6 C6 -0.261 -1.505 -0.537 ETKDGv3 3
IS6 C7 1.195 -1.136 -0.409 ETKDGv3 4
IS6 C8 3.013 0.337 0.539 ETKDGv3 5
IS6 C9 3.164 1.504 1.415 ETKDGv3 6
IS6 C10 3.286 2.463 2.135 ETKDGv3 7
IS6 N1 -1.075 -0.322 -0.776 ETKDGv3 8
IS6 N2 1.604 -0.028 0.405 ETKDGv3 9
IS6 C3 -1.988 -0.033 0.319 ETKDGv3 10
IS6 C1 -1.900 1.638 -2.195 ETKDGv3 11
IS6 C2 -1.038 0.429 -2.004 ETKDGv3 12
IS6 O1 -0.267 0.072 -2.935 ETKDGv3 13
IS6 O2 2.059 -1.832 -1.009 ETKDGv3 14
IS6 BR1 3.476 3.961 3.260 ETKDGv3 15
IS6 H1 -2.566 -1.457 1.876 ETKDGv3 16
IS6 H2 -1.050 -0.526 2.210 ETKDGv3 17
IS6 H3 -1.455 -2.983 0.509 ETKDGv3 18
IS6 H4 0.002 -2.472 1.440 ETKDGv3 19
IS6 H5 -0.398 -2.226 -1.374 ETKDGv3 20
IS6 H6 3.579 -0.513 0.973 ETKDGv3 21
IS6 H7 3.431 0.582 -0.460 ETKDGv3 22
IS6 H12 0.873 0.527 0.907 ETKDGv3 23
IS6 H13 -1.844 1.008 0.681 ETKDGv3 24
IS6 H14 -3.036 -0.175 -0.021 ETKDGv3 25
IS6 H15 -2.969 1.358 -2.090 ETKDGv3 26
IS6 H16 -1.642 2.405 -1.436 ETKDGv3 27
IS6 H17 -1.745 2.072 -3.206 ETKDGv3 28
#