data_IRK
#
_chem_comp.id IRK
_chem_comp.name
'(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1R,2S)-2-propylcyclopropyl]methoxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C21 H37 N3 O8 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 491.599
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IRK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TQ8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IRK C02 C1 C 0 1 N N N N N N -21.450 23.096 2.452 -2.520 -0.163 -0.155 C02 IRK 1
IRK C04 C2 C 0 1 N N S N N N -20.977 25.477 1.854 -0.181 -0.234 0.521 C04 IRK 2
IRK C05 C3 C 0 1 N N N N N N -21.226 26.502 0.752 -0.016 -1.594 1.203 C05 IRK 3
IRK C06 C4 C 0 1 N N N N N N -20.564 26.081 -0.587 -1.296 -1.941 1.966 C06 IRK 4
IRK C07 C5 C 0 1 N N N N N N -19.018 26.183 -0.519 -1.179 -3.352 2.544 C07 IRK 5
IRK C08 C6 C 0 1 N N N N N N -21.117 26.957 -1.732 -1.499 -0.939 3.104 C08 IRK 6
IRK C09 C7 C 0 1 N N N N N N -21.556 25.988 3.166 1.121 0.163 -0.127 C09 IRK 7
IRK C11 C8 C 0 1 N N S N N N -21.001 27.086 5.395 3.518 0.586 -0.019 C11 IRK 8
IRK C12 C9 C 0 1 N N N N N N -20.274 26.284 6.496 3.836 -0.521 -1.025 C12 IRK 9
IRK C13 C10 C 0 1 N N S N N N -20.761 24.743 6.587 3.996 -1.851 -0.286 C13 IRK 10
IRK C14 C11 C 0 1 N N N N N N -20.184 24.111 7.507 4.302 -2.966 -1.262 C14 IRK 11
IRK C16 C12 C 0 1 N N N N N N -22.637 23.651 7.577 5.771 -3.252 0.514 C16 IRK 12
IRK C17 C13 C 0 1 N N N N N N -22.419 24.709 6.919 5.232 -1.810 0.641 C17 IRK 13
IRK C19 C14 C 0 1 N N R N N N -20.635 28.560 5.491 3.445 1.931 -0.746 C19 IRK 14
IRK C23 C15 C 0 1 N N N N N N -22.236 21.032 3.297 -4.852 -0.050 -0.651 C23 IRK 15
IRK C24 C16 C 0 1 N N R N N N -23.264 19.885 3.072 -5.796 -0.171 -1.849 C24 IRK 16
IRK C25 C17 C 0 1 N N N N N N -22.748 18.518 3.560 -6.603 1.068 -2.241 C25 IRK 17
IRK C26 C18 C 0 1 N N R N N N -22.959 18.767 2.061 -7.300 -0.119 -1.572 C26 IRK 18
IRK C27 C19 C 0 1 N N N N N N -21.692 18.913 1.186 -7.744 0.052 -0.118 C27 IRK 19
IRK C28 C20 C 0 1 N N N N N N -22.041 19.611 -0.146 -9.269 -0.044 -0.036 C28 IRK 20
IRK C29 C21 C 0 1 N N N N N N -23.052 18.787 -0.977 -9.714 0.126 1.418 C29 IRK 21
IRK N03 N1 N 0 1 N N N N N N -21.623 24.227 1.545 -1.227 -0.324 -0.500 N03 IRK 22
IRK N10 N2 N 0 1 N N N N N N -20.590 26.584 4.094 2.231 0.308 0.623 N10 IRK 23
IRK N15 N3 N 0 1 N N N N N N -21.319 23.293 8.271 5.302 -3.731 -0.792 N15 IRK 24
IRK O01 O1 O 0 1 N N N N N N -20.650 23.138 3.354 -2.818 0.057 1.003 O01 IRK 25
IRK O18 O2 O 0 1 N N N N N N -19.029 24.046 7.769 3.728 -3.144 -2.316 O18 IRK 26
IRK O20 O3 O 0 1 N N N N N N -21.345 29.275 4.505 4.694 2.193 -1.388 O20 IRK 27
IRK O21 O4 O 0 1 N N N N N N -22.717 25.898 3.439 1.168 0.353 -1.324 O21 IRK 28
IRK O22 O5 O 0 1 N N N N N N -22.284 21.973 2.236 -3.482 -0.239 -1.094 O22 IRK 29
IRK H1 H1 H 0 1 N N N N N N -19.893 25.329 1.971 -0.460 0.513 1.264 H1 IRK 30
IRK H2 H2 H 0 1 N N N N N N -20.810 27.471 1.066 0.176 -2.358 0.450 H2 IRK 31
IRK H3 H3 H 0 1 N N N N N N -22.310 26.602 0.597 0.822 -1.552 1.900 H3 IRK 32
IRK H4 H4 H 0 1 N N N N N N -20.832 25.034 -0.791 -2.147 -1.895 1.286 H4 IRK 33
IRK H5 H5 H 0 1 N N N N N N -18.644 25.553 0.302 -0.328 -3.398 3.223 H5 IRK 34
IRK H6 H6 H 0 1 N N N N N N -18.586 25.840 -1.471 -2.091 -3.599 3.087 H6 IRK 35
IRK H7 H7 H 0 1 N N N N N N -18.727 27.229 -0.340 -1.035 -4.066 1.733 H7 IRK 36
IRK H8 H8 H 0 1 N N N N N N -22.213 26.871 -1.763 -1.582 0.067 2.693 H8 IRK 37
IRK H9 H9 H 0 1 N N N N N N -20.836 28.006 -1.559 -2.411 -1.186 3.648 H9 IRK 38
IRK H10 H10 H 0 1 N N N N N N -20.695 26.618 -2.690 -0.648 -0.984 3.784 H10 IRK 39
IRK H11 H11 H 0 1 N N N N N N -22.087 26.970 5.523 4.301 0.625 0.738 H11 IRK 40
IRK H12 H12 H 0 1 N N N N N N -19.195 26.298 6.284 3.022 -0.602 -1.746 H12 IRK 41
IRK H13 H13 H 0 1 N N N N N N -20.464 26.769 7.465 4.762 -0.282 -1.548 H13 IRK 42
IRK H14 H14 H 0 1 N N N N N N -20.622 24.287 5.595 3.097 -2.079 0.286 H14 IRK 43
IRK H15 H15 H 0 1 N N N N N N -23.426 23.824 8.324 6.860 -3.252 0.547 H15 IRK 44
IRK H16 H16 H 0 1 N N N N N N -22.944 22.839 6.901 5.369 -3.878 1.311 H16 IRK 45
IRK H17 H17 H 0 1 N N N N N N -22.705 25.590 7.512 5.965 -1.087 0.282 H17 IRK 46
IRK H18 H18 H 0 1 N N N N N N -22.993 24.697 5.981 4.942 -1.591 1.669 H18 IRK 47
IRK H19 H19 H 0 1 N N N N N N -19.920 28.969 6.220 2.652 1.897 -1.493 H19 IRK 48
IRK H21 H21 H 0 1 N N N N N N -21.225 20.603 3.352 -4.956 0.939 -0.206 H21 IRK 49
IRK H22 H22 H 0 1 N N N N N N -22.469 21.544 4.242 -5.103 -0.810 0.088 H22 IRK 50
IRK H23 H23 H 0 1 N N N N N N -24.322 20.120 3.260 -5.455 -0.824 -2.653 H23 IRK 51
IRK H24 H24 H 0 1 N N N N N N -23.420 17.839 4.105 -6.462 1.970 -1.645 H24 IRK 52
IRK H25 H25 H 0 1 N N N N N N -21.729 18.427 3.964 -6.793 1.230 -3.302 H25 IRK 53
IRK H26 H26 H 0 1 N N N N N N -23.824 18.274 1.594 -7.948 -0.737 -2.192 H26 IRK 54
IRK H27 H27 H 0 1 N N N N N N -21.279 17.915 0.976 -7.298 -0.733 0.493 H27 IRK 55
IRK H28 H28 H 0 1 N N N N N N -20.945 19.513 1.726 -7.421 1.026 0.249 H28 IRK 56
IRK H29 H29 H 0 1 N N N N N N -21.119 19.741 -0.733 -9.716 0.741 -0.646 H29 IRK 57
IRK H30 H30 H 0 1 N N N N N N -22.478 20.596 0.072 -9.592 -1.018 -0.403 H30 IRK 58
IRK H31 H31 H 0 1 N N N N N N -23.274 19.316 -1.915 -10.800 0.058 1.476 H31 IRK 59
IRK H32 H32 H 0 1 N N N N N N -22.621 17.801 -1.206 -9.267 -0.659 2.029 H32 IRK 60
IRK H33 H33 H 0 1 N N N N N N -23.980 18.657 -0.401 -9.390 1.100 1.785 H33 IRK 61
IRK H34 H34 H 0 1 N N N N N N -22.182 24.135 0.721 -0.990 -0.499 -1.424 H34 IRK 62
IRK H35 H35 H 0 1 N N N N N N -19.628 26.647 3.827 2.178 0.228 1.589 H35 IRK 63
IRK H36 H36 H 0 1 N N N N N N -21.196 22.673 9.046 5.668 -4.500 -1.256 H36 IRK 64
IRK H37 H37 H 0 1 N N N N N N -21.121 30.197 4.559 4.946 1.528 -2.043 H37 IRK 65
IRK S1 S1 S 0 1 N Y N N N N ? ? ? 3.092 3.247 0.451 S1 IRK 66
IRK O2 O6 O 0 1 N Y N N N N ? ? ? 1.737 2.876 1.036 O2 IRK 67
IRK O3 O7 O 0 1 N Y N N N N ? ? ? 3.983 3.168 1.556 O3 IRK 68
IRK O1 O8 O 0 1 N Y N N N N ? ? ? 2.861 4.480 -0.217 O1 IRK 69
IRK H20 H20 H 0 1 N Y N N N N ? ? ? 1.412 3.498 1.701 H20 IRK 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IRK C08 C06 SING N N 1
IRK C29 C28 SING N N 2
IRK C06 C07 SING N N 3
IRK C06 C05 SING N N 4
IRK C28 C27 SING N N 5
IRK C05 C04 SING N N 6
IRK C27 C26 SING N N 7
IRK N03 C04 SING N N 8
IRK N03 C02 SING N N 9
IRK C04 C09 SING N N 10
IRK C26 C24 SING N N 11
IRK C26 C25 SING N N 12
IRK O22 C02 SING N N 13
IRK O22 C23 SING N N 14
IRK C02 O01 DOUB N N 15
IRK C24 C23 SING N N 16
IRK C24 C25 SING N N 17
IRK C09 O21 DOUB N N 18
IRK C09 N10 SING N N 19
IRK N10 C11 SING N N 20
IRK O20 C19 SING N N 21
IRK C11 C19 SING N N 22
IRK C11 C12 SING N N 23
IRK C12 C13 SING N N 24
IRK C13 C17 SING N N 25
IRK C13 C14 SING N N 26
IRK C17 C16 SING N N 27
IRK C14 O18 DOUB N N 28
IRK C14 N15 SING N N 29
IRK C16 N15 SING N N 30
IRK C04 H1 SING N N 31
IRK C05 H2 SING N N 32
IRK C05 H3 SING N N 33
IRK C06 H4 SING N N 34
IRK C07 H5 SING N N 35
IRK C07 H6 SING N N 36
IRK C07 H7 SING N N 37
IRK C08 H8 SING N N 38
IRK C08 H9 SING N N 39
IRK C08 H10 SING N N 40
IRK C11 H11 SING N N 41
IRK C12 H12 SING N N 42
IRK C12 H13 SING N N 43
IRK C13 H14 SING N N 44
IRK C16 H15 SING N N 45
IRK C16 H16 SING N N 46
IRK C17 H17 SING N N 47
IRK C17 H18 SING N N 48
IRK C19 H19 SING N N 49
IRK C23 H21 SING N N 50
IRK C23 H22 SING N N 51
IRK C24 H23 SING N N 52
IRK C25 H24 SING N N 53
IRK C25 H25 SING N N 54
IRK C26 H26 SING N N 55
IRK C27 H27 SING N N 56
IRK C27 H28 SING N N 57
IRK C28 H29 SING N N 58
IRK C28 H30 SING N N 59
IRK C29 H31 SING N N 60
IRK C29 H32 SING N N 61
IRK C29 H33 SING N N 62
IRK N03 H34 SING N N 63
IRK N10 H35 SING N N 64
IRK N15 H36 SING N N 65
IRK O20 H37 SING N N 66
IRK C19 S1 SING N N 67
IRK S1 O2 SING N N 68
IRK S1 O3 DOUB N N 69
IRK S1 O1 DOUB N N 70
IRK O2 H20 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IRK SMILES ACDLabs 12.01 'CC(C)CC(NC(=O)OCC1CC1CCC)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O'
IRK InChI InChI 1.03 'InChI=1S/C21H37N3O8S/c1-4-5-13-9-15(13)11-32-21(28)24-16(8-12(2)3)19(26)23-17(20(27)33(29,30)31)10-14-6-7-22-18(14)25/h12-17,20,27H,4-11H2,1-3H3,(H,22,25)(H,23,26)(H,24,28)(H,29,30,31)/t13-,14-,15-,16-,17-,20+/m0/s1'
IRK InChIKey InChI 1.03 ZYXQADHLOGEXOL-CLTKYUOCSA-N
IRK SMILES_CANONICAL CACTVS 3.385 'CCC[C@H]1C[C@H]1COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O'
IRK SMILES CACTVS 3.385 'CCC[CH]1C[CH]1COC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O'
IRK SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CCC[C@H]1C[C@H]1COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O'
IRK SMILES 'OpenEye OEToolkits' 2.0.7 'CCCC1CC1COC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IRK 'SYSTEMATIC NAME' ACDLabs 12.01 '(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1R,2S)-2-propylcyclopropyl]methoxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid'
IRK 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(2~{S})-2-[[(2~{S})-4-methyl-2-[[(1~{R},2~{S})-2-propylcyclopropyl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IRK 'Create component' 2022-01-27 RCSB
IRK 'Initial release' 2022-03-02 RCSB
IRK 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id IRK
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C19
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IRK C02 C 8.146 1.785 1
IRK C04 C 7.874 -0.799 2
IRK C05 C 6.992 -2.012 3
IRK C06 C 5.501 -1.855 4
IRK C07 C 4.891 -0.485 5
IRK C08 C 4.619 -3.069 6
IRK C09 C 9.366 -0.956 7
IRK C11 C 11.468 -2.483 8
IRK C12 C 12.078 -3.853 9
IRK C13 C 11.196 -5.066 10
IRK C14 C 11.660 -6.493 11
IRK C16 C 9.233 -6.493 12
IRK C17 C 9.696 -5.066 13
IRK C19 C 12.350 -1.269 14
IRK C23 C 8.417 4.369 15
IRK C24 C 7.807 5.739 16
IRK C25 C 7.964 7.231 17
IRK C26 C 6.594 6.621 18
IRK C27 C 5.102 6.778 19
IRK C28 C 4.492 8.148 20
IRK C29 C 3.000 8.305 21
IRK N03 N 7.264 0.572 22
IRK N10 N 9.976 -2.326 23
IRK N15 N 10.446 -7.375 24
IRK O01 O 9.637 1.628 25
IRK O18 O 13.086 -6.957 26
IRK O20 O 11.739 0.101 27
IRK O21 O 10.248 0.258 28
IRK O22 O 7.536 3.155 29
IRK S1 S 13.841 -1.426 30
IRK O2 O 15.333 -1.583 31
IRK O3 O 13.998 0.066 32
IRK O1 O 13.684 -2.918 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IRK C08 C06 SINGLE NONE 1
IRK C29 C28 SINGLE NONE 2
IRK C06 C07 SINGLE NONE 3
IRK C06 C05 SINGLE NONE 4
IRK C28 C27 SINGLE NONE 5
IRK C04 C05 SINGLE BEGINDASH 6
IRK C26 C27 SINGLE BEGINWEDGE 7
IRK N03 C04 SINGLE NONE 8
IRK N03 C02 SINGLE NONE 9
IRK C04 C09 SINGLE NONE 10
IRK C26 C24 SINGLE NONE 11
IRK C26 C25 SINGLE NONE 12
IRK O22 C02 SINGLE NONE 13
IRK O22 C23 SINGLE NONE 14
IRK C02 O01 DOUBLE NONE 15
IRK C24 C23 SINGLE BEGINWEDGE 16
IRK C24 C25 SINGLE NONE 17
IRK C09 O21 DOUBLE NONE 18
IRK C09 N10 SINGLE NONE 19
IRK N10 C11 SINGLE NONE 20
IRK C19 O20 SINGLE BEGINDASH 21
IRK C11 C19 SINGLE NONE 22
IRK C11 C12 SINGLE BEGINDASH 23
IRK C13 C12 SINGLE BEGINWEDGE 24
IRK C13 C17 SINGLE NONE 25
IRK C13 C14 SINGLE NONE 26
IRK C17 C16 SINGLE NONE 27
IRK C14 O18 DOUBLE NONE 28
IRK C14 N15 SINGLE NONE 29
IRK C16 N15 SINGLE NONE 30
IRK C19 S1 SINGLE NONE 31
IRK S1 O2 SINGLE NONE 32
IRK S1 O3 DOUBLE NONE 33
IRK S1 O1 DOUBLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IRK MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCC1CC1)NCC[C@@H]1CCNC1=O' InChI=1S/C13H21N3O4/c17-11(7-16-13(19)20-8-9-1-2-9)14-5-3-10-4-6-15-12(10)18/h9-10H,1-8H2,(H,14,17)(H,15,18)(H,16,19)/t10-/m1/s1 RAMDDUXYNZHECD-SNVBAGLBSA-N
IRK amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
IRK cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
IRK peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IRK C02 S1 1
IRK C04 S1 1
IRK C09 S1 1
IRK C11 S1 1
IRK C12 S1 1
IRK C13 S1 1
IRK C14 S1 1
IRK C16 S1 1
IRK C17 S1 1
IRK C23 S1 1
IRK C24 S1 1
IRK C25 S1 1
IRK C26 S1 1
IRK N03 S1 1
IRK N10 S1 1
IRK N15 S1 1
IRK O01 S1 1
IRK O18 S1 1
IRK O21 S1 1
IRK O22 S1 1
IRK N10 F1 1
IRK C09 F1 1
IRK O21 F1 1
IRK C04 F1 1
IRK N15 F1 2
IRK C14 F1 2
IRK O18 F1 2
IRK C13 F1 2
IRK C24 F2 1
IRK C26 F2 1
IRK C25 F2 1
IRK O21 F3 1
IRK C09 F3 1
IRK C04 F3 1
IRK N03 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IRK
_pdbe_chem_comp_rdkit_properties.exactmw 491.230
_pdbe_chem_comp_rdkit_properties.amw 491.607
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 247.028
_pdbe_chem_comp_rdkit_properties.tpsa 171.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.781
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.452
_pdbe_chem_comp_rdkit_properties.chi0v 16.332
_pdbe_chem_comp_rdkit_properties.chi1v 9.179
_pdbe_chem_comp_rdkit_properties.chi2v 3.591
_pdbe_chem_comp_rdkit_properties.chi3v 3.591
_pdbe_chem_comp_rdkit_properties.chi4v 1.961
_pdbe_chem_comp_rdkit_properties.chi0n 52.516
_pdbe_chem_comp_rdkit_properties.chi1n 25.929
_pdbe_chem_comp_rdkit_properties.chi2n 2.944
_pdbe_chem_comp_rdkit_properties.chi3n 2.944
_pdbe_chem_comp_rdkit_properties.chi4n 1.628
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.920
_pdbe_chem_comp_rdkit_properties.kappa1 5.893
_pdbe_chem_comp_rdkit_properties.kappa2 11.980
_pdbe_chem_comp_rdkit_properties.kappa3 8.744
_pdbe_chem_comp_rdkit_properties.Phi 2.139
#
_pdbe_chem_comp_external_mappings.comp_id IRK
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 162677689
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IRK C02 1.780 -1.321 0.091 ETKDGv3 1
IRK C04 -0.131 -2.944 -0.306 ETKDGv3 2
IRK C05 -0.409 -4.451 -0.063 ETKDGv3 3
IRK C06 -1.384 -5.137 -1.056 ETKDGv3 4
IRK C07 -2.799 -4.547 -1.023 ETKDGv3 5
IRK C08 -0.840 -5.174 -2.491 ETKDGv3 6
IRK C09 -1.265 -2.078 0.181 ETKDGv3 7
IRK C11 -2.864 -0.140 -0.236 ETKDGv3 8
IRK C12 -2.819 1.092 -1.181 ETKDGv3 9
IRK C13 -3.660 2.307 -0.735 ETKDGv3 10
IRK C14 -3.090 2.973 0.468 ETKDGv3 11
IRK C16 -2.682 4.538 -1.220 ETKDGv3 12
IRK C17 -3.600 3.440 -1.787 ETKDGv3 13
IRK C19 -4.257 -0.843 -0.132 ETKDGv3 14
IRK C23 3.630 0.238 0.616 ETKDGv3 15
IRK C24 4.816 0.294 1.588 ETKDGv3 16
IRK C25 4.690 1.289 2.738 ETKDGv3 17
IRK C26 5.686 1.553 1.612 ETKDGv3 18
IRK C27 5.327 2.712 0.659 ETKDGv3 19
IRK C28 6.084 3.997 1.024 ETKDGv3 20
IRK C29 7.564 3.936 0.647 ETKDGv3 21
IRK N03 1.095 -2.542 0.391 ETKDGv3 22
IRK N10 -1.867 -1.115 -0.697 ETKDGv3 23
IRK N15 -2.530 4.236 0.187 ETKDGv3 24
IRK O01 1.370 -0.571 -0.837 ETKDGv3 25
IRK O18 -3.121 2.493 1.631 ETKDGv3 26
IRK O20 -5.098 -0.521 -1.209 ETKDGv3 27
IRK O21 -1.645 -2.166 1.381 ETKDGv3 28
IRK O22 2.906 -0.967 0.841 ETKDGv3 29
IRK H1 0.027 -2.785 -1.392 ETKDGv3 30
IRK H2 0.558 -4.998 -0.122 ETKDGv3 31
IRK H3 -0.778 -4.603 0.975 ETKDGv3 32
IRK H4 -1.472 -6.194 -0.720 ETKDGv3 33
IRK H5 -3.500 -5.223 -1.557 ETKDGv3 34
IRK H6 -3.152 -4.441 0.025 ETKDGv3 35
IRK H7 -2.829 -3.559 -1.526 ETKDGv3 36
IRK H8 -1.463 -5.853 -3.111 ETKDGv3 37
IRK H9 -0.861 -4.167 -2.959 ETKDGv3 38
IRK H10 0.202 -5.558 -2.501 ETKDGv3 39
IRK H11 -2.543 0.206 0.768 ETKDGv3 40
IRK H12 -3.145 0.777 -2.197 ETKDGv3 41
IRK H13 -1.759 1.418 -1.282 ETKDGv3 42
IRK H14 -4.716 2.021 -0.570 ETKDGv3 43
IRK H15 -3.135 5.545 -1.349 ETKDGv3 44
IRK H16 -1.687 4.506 -1.713 ETKDGv3 45
IRK H17 -4.620 3.859 -1.930 ETKDGv3 46
IRK H18 -3.232 3.094 -2.778 ETKDGv3 47
IRK H19 -4.108 -1.947 -0.116 ETKDGv3 48
IRK H21 2.938 1.098 0.742 ETKDGv3 49
IRK H22 4.021 0.240 -0.424 ETKDGv3 50
IRK H23 5.360 -0.644 1.829 ETKDGv3 51
IRK H24 5.164 0.949 3.683 ETKDGv3 52
IRK H25 3.780 1.927 2.742 ETKDGv3 53
IRK H26 6.748 1.355 1.864 ETKDGv3 54
IRK H27 5.572 2.415 -0.383 ETKDGv3 55
IRK H28 4.242 2.947 0.689 ETKDGv3 56
IRK H29 5.982 4.202 2.112 ETKDGv3 57
IRK H30 5.622 4.847 0.477 ETKDGv3 58
IRK H31 7.680 3.718 -0.436 ETKDGv3 59
IRK H32 8.092 3.160 1.238 ETKDGv3 60
IRK H33 8.039 4.917 0.861 ETKDGv3 61
IRK H34 1.465 -3.130 1.173 ETKDGv3 62
IRK H35 -1.557 -1.094 -1.696 ETKDGv3 63
IRK H36 -2.012 4.827 0.875 ETKDGv3 64
IRK H37 -4.781 -1.051 -1.987 ETKDGv3 65
IRK S1 -5.107 -0.488 1.408 ETKDGv3 66
IRK O2 -4.059 -0.682 2.709 ETKDGv3 67
IRK O3 -5.644 0.914 1.418 ETKDGv3 68
IRK O1 -6.259 -1.442 1.560 ETKDGv3 69
IRK H20 -3.961 -1.662 2.816 ETKDGv3 70
#