data_IPU
#
_chem_comp.id IPU
_chem_comp.name S-ISOPROPYL-ISOTHIOUREA
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H10 N2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-02-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 118.201
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IPU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ED4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IPU C1 C1 C 0 1 N N N N N N 0.509 1.729 53.029 -0.510 0.230 2.692 C1 IPU 1
IPU C2 C2 C 0 1 N N N N N N 1.847 2.488 53.072 0.195 0.328 1.338 C2 IPU 2
IPU C3 C3 C 0 1 N N N N N N 2.974 1.482 52.792 1.385 -0.633 1.313 C3 IPU 3
IPU C C C 0 1 N N N N N N 2.704 4.867 54.498 0.081 0.080 -1.383 C IPU 4
IPU S S S 0 1 N N N N N N 2.061 3.250 54.711 -0.964 -0.111 0.020 S IPU 5
IPU N1 N1 N 0 1 N N N N N N 3.377 5.167 53.448 1.322 0.451 -1.227 N1 IPU 6
IPU N2 N2 N 0 1 N N N N N N 2.536 5.863 55.477 -0.409 -0.161 -2.645 N2 IPU 7
IPU H11 1H1 H 0 1 N N N N N N -0.308 2.459 53.232 -0.863 -0.789 2.845 H11 IPU 8
IPU H12 2H1 H 0 1 N N N N N N 0.360 1.170 52.075 0.188 0.495 3.486 H12 IPU 9
IPU H13 3H1 H 0 1 N N N N N N 0.487 0.854 53.720 -1.357 0.915 2.711 H13 IPU 10
IPU H2 H2 H 0 1 N N N N N N 1.867 3.297 52.305 0.549 1.347 1.186 H2 IPU 11
IPU H31 1H3 H 0 1 N N N N N N 3.943 2.031 52.823 1.031 -1.653 1.466 H31 IPU 12
IPU H32 2H3 H 0 1 N N N N N N 2.952 0.607 53.483 1.888 -0.564 0.348 H32 IPU 13
IPU H33 3H3 H 0 1 N N N N N N 2.825 0.923 51.838 2.083 -0.368 2.107 H33 IPU 14
IPU HN1 HN1 H 0 1 N N N N N N 3.851 4.822 54.282 1.898 0.557 -2.000 HN1 IPU 15
IPU HN21 1HN2 H 0 0 N N N N N N 2.910 6.803 55.353 0.166 -0.055 -3.419 HN21 IPU 16
IPU HN22 2HN2 H 0 0 N N N N N N 2.893 5.497 56.359 -1.332 -0.437 -2.762 HN22 IPU 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IPU C1 C2 SING N N 1
IPU C1 H11 SING N N 2
IPU C1 H12 SING N N 3
IPU C1 H13 SING N N 4
IPU C2 C3 SING N N 5
IPU C2 S SING N N 6
IPU C2 H2 SING N N 7
IPU C3 H31 SING N N 8
IPU C3 H32 SING N N 9
IPU C3 H33 SING N N 10
IPU C S SING N N 11
IPU C N1 DOUB N N 12
IPU C N2 SING N N 13
IPU N1 HN1 SING N N 14
IPU N2 HN21 SING N N 15
IPU N2 HN22 SING N N 16
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IPU SMILES ACDLabs 10.04 "[N@H]=C(SC(C)C)N"
IPU SMILES_CANONICAL CACTVS 3.341 CC(C)SC(N)=N
IPU SMILES CACTVS 3.341 CC(C)SC(N)=N
IPU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)SC(=N)N
IPU SMILES "OpenEye OEToolkits" 1.5.0 CC(C)SC(=N)N
IPU InChI InChI 1.03 InChI=1S/C4H10N2S/c1-3(2)7-4(5)6/h3H,1-2H3,(H3,5,6)
IPU InChIKey InChI 1.03 XSSNABKEYXKKMK-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IPU "SYSTEMATIC NAME" ACDLabs 10.04 "1-methylethyl imidothiocarbamate"
IPU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 propan-2-ylsulfanylmethanimidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IPU 'Create component' 2000-02-02 RCSB
IPU 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id IPU
_pdbe_chem_comp_drugbank_details.drugbank_id DB04018
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name S-Isopropyl-Isothiourea
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id IPU
_pdbe_chem_comp_synonyms.name S-Isopropyl-Isothiourea
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id IPU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04018
_pdbe_chem_comp_drugbank_classification.parent Isothioureas
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Isothioureas
_pdbe_chem_comp_drugbank_classification.superclass 'Organosulfur compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as isothioureas. These are organic compounds containing the isothiourea group, with the general structure R1SC(=NR2)N(R3)R4 (R1,R2,R3,R4=H, alkyl, aryl).'
#
_pdbe_chem_comp_drugbank_targets.comp_id IPU
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04018
_pdbe_chem_comp_drugbank_targets.name 'Nitric oxide synthase 3'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P29474
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IPU C1 C 3.000 0.892 1
IPU C2 C 4.299 0.142 2
IPU C3 C 4.299 -1.357 3
IPU C C 6.897 0.142 4
IPU S S 5.598 0.892 5
IPU N1 N 8.196 0.892 6
IPU N2 N 6.897 -1.357 7
IPU HN1 H 8.196 2.392 8
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IPU C1 C2 SINGLE NONE 1
IPU C2 C3 SINGLE NONE 2
IPU C2 S SINGLE NONE 3
IPU C S SINGLE ENDDOWNRIGHT 4
IPU C N1 DOUBLE NONE 5
IPU C N2 SINGLE ENDUPRIGHT 6
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id IPU
_pdbe_chem_comp_rdkit_properties.exactmw 118.056
_pdbe_chem_comp_rdkit_properties.amw 118.205
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 62.206
_pdbe_chem_comp_rdkit_properties.tpsa 49.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.021
_pdbe_chem_comp_rdkit_properties.CrippenMR 34.641
_pdbe_chem_comp_rdkit_properties.chi0v 4.119
_pdbe_chem_comp_rdkit_properties.chi1v 2.172
_pdbe_chem_comp_rdkit_properties.chi2v 0.580
_pdbe_chem_comp_rdkit_properties.chi3v 0.580
_pdbe_chem_comp_rdkit_properties.chi4v 0.274
_pdbe_chem_comp_rdkit_properties.chi0n 13.303
_pdbe_chem_comp_rdkit_properties.chi1n 6.197
_pdbe_chem_comp_rdkit_properties.chi2n 0.193
_pdbe_chem_comp_rdkit_properties.chi3n 0.193
_pdbe_chem_comp_rdkit_properties.chi4n 0.091
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.180
_pdbe_chem_comp_rdkit_properties.kappa1 0.923
_pdbe_chem_comp_rdkit_properties.kappa2 2.907
_pdbe_chem_comp_rdkit_properties.kappa3 5.820
_pdbe_chem_comp_rdkit_properties.Phi 0.383
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IPU UniChem DrugBank DB04018
IPU UniChem ZINC ZINC000003806248
IPU UniChem eMolecules 6758288
IPU UniChem SureChEMBL SCHEMBL232032
IPU UniChem 'PubChem TPHARMA' 15321257
IPU UniChem LINCS LSM-15203
IPU UniChem BindingDb 50271827
IPU UniChem 'EPA CompTox Dashboard' DTXSID10332182
IPU UniChem 'Probes And Drugs' PD006554
IPU UniChem Nikkaji J634.092J
IPU UniChem PubChem 445319
IPU UniChem Mcule MCULE-1974434339
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IPU C1 0.835 -0.161 1.455 ETKDGv3 1
IPU C2 0.829 0.123 -0.048 ETKDGv3 2
IPU C3 2.184 0.671 -0.495 ETKDGv3 3
IPU C -1.809 0.146 -0.513 ETKDGv3 4
IPU S -0.475 1.342 -0.460 ETKDGv3 5
IPU N1 -2.534 -0.050 0.541 ETKDGv3 6
IPU N2 -2.080 -0.563 -1.723 ETKDGv3 7
IPU H11 0.995 0.777 2.029 ETKDGv3 8
IPU H12 1.644 -0.879 1.707 ETKDGv3 9
IPU H13 -0.131 -0.611 1.766 ETKDGv3 10
IPU H2 0.646 -0.827 -0.597 ETKDGv3 11
IPU H31 2.173 0.860 -1.589 ETKDGv3 12
IPU H32 2.987 -0.065 -0.277 ETKDGv3 13
IPU H33 2.414 1.623 0.031 ETKDGv3 14
IPU HN1 -3.324 -0.733 0.543 ETKDGv3 15
IPU HN21 -1.495 -0.395 -2.571 ETKDGv3 16
IPU HN22 -2.858 -1.258 -1.776 ETKDGv3 17
#