data_IBM
#
_chem_comp.id IBM
_chem_comp.name 3-ISOBUTYL-1-METHYLXANTHINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-11-24
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 222.244
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IBM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1RKP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IBM N9 N9 N 0 1 Y N N N N N 44.028 15.049 46.236 -2.456 -0.248 -0.162 N9 IBM 1
IBM C8 C8 C 0 1 Y N N N N N 44.543 16.078 45.487 -3.000 0.064 -1.374 C8 IBM 2
IBM N7 N7 N 0 1 Y N N N N N 44.595 17.219 46.130 -2.049 0.260 -2.240 N7 IBM 3
IBM C5 C5 C 0 1 Y N N N N N 44.086 16.918 47.383 -0.852 0.084 -1.631 C5 IBM 4
IBM C4 C4 C 0 1 Y N N N N N 43.733 15.588 47.465 -1.105 -0.245 -0.305 C4 IBM 5
IBM N3 N3 N 0 1 Y N N N N N 43.211 14.942 48.529 -0.046 -0.472 0.543 N3 IBM 6
IBM C2 C2 C 0 1 Y N N N N N 43.014 15.730 49.631 1.220 -0.387 0.101 C2 IBM 7
IBM N1 N1 N 0 1 Y N N N N N 43.359 17.082 49.644 1.517 -0.075 -1.171 N1 IBM 8
IBM C6 C6 C 0 1 Y N N N N N 43.892 17.679 48.527 0.541 0.167 -2.072 C6 IBM 9
IBM O6 O6 O 0 1 N N N N N N 44.188 18.869 48.533 0.813 0.448 -3.225 O6 IBM 10
IBM O2 O2 O 0 1 N N N N N N 42.520 15.233 50.637 2.129 -0.599 0.880 O2 IBM 11
IBM C10 C10 C 0 1 N N N N N N 43.191 17.857 50.865 2.920 0.000 -1.587 C10 IBM 12
IBM C11 C11 C 0 1 N N N N N N 42.888 13.523 48.498 -0.302 -0.817 1.944 C11 IBM 13
IBM C12 C12 C 0 1 N N N N N N 44.172 12.707 48.654 -0.363 0.462 2.780 C12 IBM 14
IBM C13 C13 C 0 1 N N N N N N 44.985 13.165 49.866 -0.631 0.102 4.243 C13 IBM 15
IBM C14 C14 C 0 1 N N N N N N 43.850 11.222 48.752 0.968 1.206 2.674 C14 IBM 16
IBM HN9 HN9 H 0 1 N N N N N N 43.892 14.082 45.940 -2.946 -0.441 0.652 HN9 IBM 17
IBM H8 H8 H 0 1 N N N N N N 44.890 15.994 44.443 -4.057 0.137 -1.582 H8 IBM 18
IBM H101 1H10 H 0 0 N N N N N N 43.466 18.937 50.875 2.971 0.262 -2.644 H101 IBM 19
IBM H102 2H10 H 0 0 N N N N N N 42.134 17.757 51.205 3.433 0.760 -0.999 H102 IBM 20
IBM H103 3H10 H 0 0 N N N N N N 43.738 17.343 51.689 3.399 -0.965 -1.429 H103 IBM 21
IBM H111 1H11 H 0 0 N N N N N N 42.118 13.248 49.256 0.500 -1.454 2.313 H111 IBM 22
IBM H112 2H11 H 0 0 N N N N N N 42.316 13.240 47.583 -1.251 -1.346 2.020 H112 IBM 23
IBM H12 H12 H 0 1 N N N N N N 44.796 12.878 47.746 -1.166 1.100 2.411 H12 IBM 24
IBM H131 1H13 H 0 0 N N N N N N 45.921 12.570 49.979 -0.675 1.014 4.839 H131 IBM 25
IBM H132 2H13 H 0 0 N N N N N N 45.199 14.258 49.823 -1.580 -0.427 4.319 H132 IBM 26
IBM H133 3H13 H 0 0 N N N N N N 44.373 13.144 50.798 0.171 -0.535 4.613 H133 IBM 27
IBM H141 1H14 H 0 0 N N N N N N 44.786 10.627 48.865 1.771 0.568 3.044 H141 IBM 28
IBM H142 2H14 H 0 0 N N N N N N 43.121 11.008 49.568 1.159 1.462 1.632 H142 IBM 29
IBM H143 3H14 H 0 0 N N N N N N 43.238 10.872 47.887 0.925 2.117 3.270 H143 IBM 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IBM N9 C8 SING Y N 1
IBM N9 C4 SING Y N 2
IBM N9 HN9 SING N N 3
IBM C8 N7 DOUB Y N 4
IBM C8 H8 SING N N 5
IBM N7 C5 SING Y N 6
IBM C5 C4 DOUB Y N 7
IBM C5 C6 SING Y N 8
IBM C4 N3 SING Y N 9
IBM N3 C2 SING Y N 10
IBM N3 C11 SING N N 11
IBM C2 N1 SING Y N 12
IBM C2 O2 DOUB N N 13
IBM N1 C6 SING Y N 14
IBM N1 C10 SING N N 15
IBM C6 O6 DOUB N N 16
IBM C10 H101 SING N N 17
IBM C10 H102 SING N N 18
IBM C10 H103 SING N N 19
IBM C11 C12 SING N N 20
IBM C11 H111 SING N N 21
IBM C11 H112 SING N N 22
IBM C12 C13 SING N N 23
IBM C12 C14 SING N N 24
IBM C12 H12 SING N N 25
IBM C13 H131 SING N N 26
IBM C13 H132 SING N N 27
IBM C13 H133 SING N N 28
IBM C14 H141 SING N N 29
IBM C14 H142 SING N N 30
IBM C14 H143 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IBM SMILES ACDLabs 10.04 O=C2c1ncnc1N(C(=O)N2C)CC(C)C
IBM SMILES_CANONICAL CACTVS 3.341 CC(C)CN1C(=O)N(C)C(=O)c2nc[nH]c12
IBM SMILES CACTVS 3.341 CC(C)CN1C(=O)N(C)C(=O)c2nc[nH]c12
IBM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)CN1c2c(nc[nH]2)C(=O)N(C1=O)C
IBM SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CN1c2c(nc[nH]2)C(=O)N(C1=O)C
IBM InChI InChI 1.03 InChI=1S/C10H14N4O2/c1-6(2)4-14-8-7(11-5-12-8)9(15)13(3)10(14)16/h5-6H,4H2,1-3H3,(H,11,12)
IBM InChIKey InChI 1.03 APIXJSLKIYYUKG-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IBM "SYSTEMATIC NAME" ACDLabs 10.04 1-methyl-3-(2-methylpropyl)-3,9-dihydro-1H-purine-2,6-dione
IBM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methyl-3-(2-methylpropyl)-9H-purine-2,6-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IBM 'Create component' 2003-11-24 RCSB
IBM 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id IBM
_pdbe_chem_comp_drugbank_details.drugbank_id DB07954
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3-isobutyl-1-methyl-7H-xanthine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 28822-58-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
IBM 1-methyl-3-(2-methylpropyl)-7H-purine-2,6-dione DrugBank ?
IBM 1-methyl-3-isobutylxanthine DrugBank ?
IBM 3-isobutyl-1-methyl-3,7-dihydro-1H-purine-2,6-dione DrugBank ?
IBM 3-isobutyl-1-methylxanthine DrugBank ?
IBM 3-Isobutyl-1-methyxanthine DrugBank ?
IBM IBMX DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id IBM
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07954
_pdbe_chem_comp_drugbank_classification.parent Xanthines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Imidazopyrimidines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as xanthines. These are purine derivatives with a ketone group conjugated at carbons 2 and 6 of the purine moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
IBM DB07954 'Adenosine receptor A1' Humans P30542 yes 1
IBM DB07954 "cGMP-inhibited 3',5'-cyclic phosphodiesterase 3A" Humans Q14432 yes 2
IBM DB07954 'Adenosine receptor A2a' Humans P29274 yes 3
IBM DB07954 "3',5'-cyclic-AMP phosphodiesterase 4B" Humans Q07343 yes 4
IBM DB07954 'Adenosine receptor A2b' Humans P29275 yes 5
IBM DB07954 "3',5'-cyclic-AMP phosphodiesterase 4A" Humans P27815 yes 6
IBM DB07954 'Adenosine receptor A3' Humans P0DMS8 yes 7
IBM DB07954 "3',5'-cyclic-AMP phosphodiesterase 4D" Humans Q08499 yes 8
IBM DB07954 "cGMP-specific 3',5'-cyclic phosphodiesterase" Humans O76074 yes 9
IBM DB07954 "cGMP-dependent 3',5'-cyclic phosphodiesterase" Humans O00408 yes 10
IBM DB07954 "cGMP-inhibited 3',5'-cyclic phosphodiesterase 3B" Humans Q13370 unknown 11
IBM DB07954 "High affinity 3',5'-cyclic-AMP phosphodiesterase 7A" Humans Q13946 unknown 12
IBM DB07954 "High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A" Humans O76083 unknown 13
IBM DB07954 "High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A" Humans O60658 unknown 14
IBM DB07954 "Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma" Humans P18545 unknown 15
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
IBM N9 N 8.316 -0.082 1
IBM C8 C 9.192 1.125 2
IBM N7 N 8.316 2.332 3
IBM C5 C 6.897 1.875 4
IBM C4 C 6.897 0.375 5
IBM N3 N 5.598 -0.375 6
IBM C2 C 4.299 0.375 7
IBM N1 N 4.299 1.875 8
IBM C6 C 5.598 2.625 9
IBM O6 O 5.598 4.125 10
IBM O2 O 3.000 -0.375 11
IBM C10 C 3.000 2.625 12
IBM C11 C 5.598 -1.875 13
IBM C12 C 4.299 -2.625 14
IBM C13 C 4.299 -4.125 15
IBM C14 C 3.000 -1.875 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
IBM N9 C8 SINGLE NONE 1
IBM N9 C4 SINGLE NONE 2
IBM C8 N7 DOUBLE NONE 3
IBM N7 C5 SINGLE NONE 4
IBM C5 C4 DOUBLE NONE 5
IBM C5 C6 SINGLE NONE 6
IBM C4 N3 SINGLE NONE 7
IBM N3 C2 SINGLE NONE 8
IBM N3 C11 SINGLE NONE 9
IBM C2 N1 SINGLE NONE 10
IBM C2 O2 DOUBLE NONE 11
IBM N1 C6 SINGLE NONE 12
IBM N1 C10 SINGLE NONE 13
IBM C6 O6 DOUBLE NONE 14
IBM C11 C12 SINGLE NONE 15
IBM C12 C13 SINGLE NONE 16
IBM C12 C14 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
IBM MurckoScaffold S1 scaffold 'O=c1[nH]c(=O)c2nc[nH]c2[nH]1' InChI=1S/C5H4N4O2/c10-4-2-3(7-1-6-2)8-5(11)9-4/h1H,(H3,6,7,8,9,10,11) LRFVTYWOQMYALW-UHFFFAOYSA-N
IBM imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
IBM purine F2 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
IBM pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
IBM N9 S1 1
IBM C8 S1 1
IBM N7 S1 1
IBM C5 S1 1
IBM C4 S1 1
IBM N3 S1 1
IBM C2 S1 1
IBM N1 S1 1
IBM C6 S1 1
IBM O6 S1 1
IBM O2 S1 1
IBM C5 F1 1
IBM C4 F1 1
IBM N9 F1 1
IBM C8 F1 1
IBM N7 F1 1
IBM N7 F2 1
IBM C8 F2 1
IBM N9 F2 1
IBM C4 F2 1
IBM C5 F2 1
IBM C6 F2 1
IBM N1 F2 1
IBM C2 F2 1
IBM N3 F2 1
IBM C5 F3 1
IBM C4 F3 1
IBM N3 F3 1
IBM C2 F3 1
IBM N1 F3 1
IBM C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id IBM
_pdbe_chem_comp_rdkit_properties.exactmw 222.112
_pdbe_chem_comp_rdkit_properties.amw 222.248
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 111.277
_pdbe_chem_comp_rdkit_properties.tpsa 72.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.451
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.443
_pdbe_chem_comp_rdkit_properties.chi0v 7.605
_pdbe_chem_comp_rdkit_properties.chi1v 3.894
_pdbe_chem_comp_rdkit_properties.chi2v 1.753
_pdbe_chem_comp_rdkit_properties.chi3v 1.753
_pdbe_chem_comp_rdkit_properties.chi4v 1.121
_pdbe_chem_comp_rdkit_properties.chi0n 21.605
_pdbe_chem_comp_rdkit_properties.chi1n 10.842
_pdbe_chem_comp_rdkit_properties.chi2n 1.753
_pdbe_chem_comp_rdkit_properties.chi3n 1.753
_pdbe_chem_comp_rdkit_properties.chi4n 1.121
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.850
_pdbe_chem_comp_rdkit_properties.kappa1 2.880
_pdbe_chem_comp_rdkit_properties.kappa2 3.622
_pdbe_chem_comp_rdkit_properties.kappa3 1.461
_pdbe_chem_comp_rdkit_properties.Phi 0.652
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
IBM UniChem DrugBank DB07954
IBM UniChem 'Guide to Pharmacology' 388
IBM UniChem 'KEGG LIGAND' C13708
IBM UniChem ChEBI 34795
IBM UniChem ChEBI 43253
IBM UniChem ZINC ZINC000003861807
IBM UniChem eMolecules 1012740
IBM UniChem fdasrs TBT296U68M
IBM UniChem HMDB HMDB0245912
IBM UniChem 'PubChem TPHARMA' 15195998
IBM UniChem LINCS LSM-24983
IBM UniChem ACTor 28822-58-4
IBM UniChem Nikkaji J107.263C
IBM UniChem BindingDb 15336
IBM UniChem BindingDb 50027176
IBM UniChem 'EPA CompTox Dashboard' DTXSID0040549
IBM UniChem BRENDA 10106
IBM UniChem BRENDA 1157
IBM UniChem BRENDA 125122
IBM UniChem BRENDA 135758
IBM UniChem BRENDA 13943
IBM UniChem BRENDA 232754
IBM UniChem BRENDA 232760
IBM UniChem BRENDA 69113
IBM UniChem BRENDA 71574
IBM UniChem BRENDA 7213
IBM UniChem ChemicalBook CB6263892
IBM UniChem MedChemExpress HY-12318
IBM UniChem 'Probes And Drugs' PD000069
IBM UniChem CCDC CEWVIJ
IBM UniChem eMolecules 523473
IBM UniChem SureChEMBL SCHEMBL50315
IBM UniChem 'PubChem TPHARMA' 14822728
IBM UniChem PubChem 3758
IBM UniChem Mcule MCULE-3854999514
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
IBM N9 -0.393 2.514 -0.221 ETKDGv3 1
IBM C8 -1.445 3.168 -0.933 ETKDGv3 2
IBM N7 -2.447 2.389 -1.216 ETKDGv3 3
IBM C5 -2.074 1.126 -0.674 ETKDGv3 4
IBM C4 -0.898 1.195 -0.105 ETKDGv3 5
IBM N3 -0.267 0.081 0.548 ETKDGv3 6
IBM C2 -0.979 -1.180 0.559 ETKDGv3 7
IBM N1 -2.264 -1.293 -0.102 ETKDGv3 8
IBM C6 -2.845 -0.114 -0.699 ETKDGv3 9
IBM O6 -3.988 -0.142 -1.228 ETKDGv3 10
IBM O2 -0.481 -2.182 1.143 ETKDGv3 11
IBM C10 -3.020 -2.548 -0.050 ETKDGv3 12
IBM C11 1.070 0.221 1.143 ETKDGv3 13
IBM C12 2.171 0.182 0.063 ETKDGv3 14
IBM C13 3.535 0.504 0.686 ETKDGv3 15
IBM C14 2.221 -1.181 -0.641 ETKDGv3 16
IBM HN9 0.506 2.916 0.122 ETKDGv3 17
IBM H8 -1.418 4.213 -1.213 ETKDGv3 18
IBM H101 -3.694 -2.640 -0.927 ETKDGv3 19
IBM H102 -3.624 -2.579 0.881 ETKDGv3 20
IBM H103 -2.333 -3.420 -0.070 ETKDGv3 21
IBM H111 1.120 1.183 1.697 ETKDGv3 22
IBM H112 1.250 -0.576 1.898 ETKDGv3 23
IBM H12 1.956 0.959 -0.702 ETKDGv3 24
IBM H131 3.513 1.509 1.158 ETKDGv3 25
IBM H132 3.801 -0.250 1.458 ETKDGv3 26
IBM H133 4.323 0.510 -0.097 ETKDGv3 27
IBM H141 2.388 -1.997 0.094 ETKDGv3 28
IBM H142 3.044 -1.197 -1.387 ETKDGv3 29
IBM H143 1.272 -1.370 -1.185 ETKDGv3 30
#