data_I4B
#
_chem_comp.id I4B
_chem_comp.name ISOBUTYLBENZENE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 134.218
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I4B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 184L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I4B C1 C1 C 0 1 Y N N N N N 27.357 6.772 3.388 -0.257 -0.427 -0.280 C1 I4B 1
I4B C2 C2 C 0 1 Y N N N N N 27.321 7.293 4.658 0.988 -0.594 -0.855 C2 I4B 2
I4B C3 C3 C 0 1 Y N N N N N 26.568 6.650 5.670 1.197 -0.227 -2.171 C3 I4B 3
I4B C4 C4 C 0 1 Y N N N N N 25.831 5.526 5.359 0.160 0.306 -2.913 C4 I4B 4
I4B C5 C5 C 0 1 Y N N N N N 25.887 4.987 4.077 -1.086 0.473 -2.338 C5 I4B 5
I4B C6 C6 C 0 1 Y N N N N N 26.664 5.607 3.088 -1.296 0.102 -1.023 C6 I4B 6
I4B "C1'" "C1'" C 0 1 N N N N N N 28.135 7.495 2.335 -0.485 -0.827 1.154 "C1'" I4B 7
I4B "C2'" "C2'" C 0 1 N N N N N N 27.165 8.338 1.533 -0.186 0.361 2.069 "C2'" I4B 8
I4B "C3'" "C3'" C 0 1 N N N N N N 27.868 8.799 0.291 -0.417 -0.044 3.525 "C3'" I4B 9
I4B "C4'" "C4'" C 0 1 N N N N N N 26.664 9.508 2.339 1.270 0.792 1.885 "C4'" I4B 10
I4B H2 H2 H 0 1 N N N N N N 27.889 8.215 4.862 1.798 -1.012 -0.276 H2 I4B 11
I4B H3 H3 H 0 1 N N N N N N 26.555 7.026 6.706 2.170 -0.358 -2.620 H3 I4B 12
I4B H4 H4 H 0 1 N N N N N N 25.198 5.059 6.133 0.323 0.594 -3.941 H4 I4B 13
I4B H5 H5 H 0 1 N N N N N N 25.317 4.071 3.845 -1.896 0.891 -2.917 H5 I4B 14
I4B H6 H6 H 0 1 N N N N N N 26.730 5.178 2.073 -2.269 0.232 -0.574 H6 I4B 15
I4B "H1'1" "1H1'" H 0 0 N N N N N N 28.979 8.090 2.754 0.173 -1.657 1.409 "H1'1" I4B 16
I4B "H1'2" "2H1'" H 0 0 N N N N N N 28.739 6.808 1.697 -1.523 -1.134 1.285 "H1'2" I4B 17
I4B "H2'" "H2'" H 0 1 N N N N N N 26.270 7.730 1.260 -0.845 1.191 1.814 "H2'" I4B 18
I4B "H3'1" "1H3'" H 0 0 N N N N N N 27.154 9.419 -0.299 -0.204 0.802 4.177 "H3'1" I4B 19
I4B "H3'2" "2H3'" H 0 0 N N N N N N 28.823 9.330 0.508 -1.455 -0.352 3.656 "H3'2" I4B 20
I4B "H3'3" "3H3'" H 0 0 N N N N N N 28.297 7.956 -0.299 0.241 -0.874 3.780 "H3'3" I4B 21
I4B "H4'1" "1H4'" H 0 0 N N N N N N 25.950 10.128 1.748 1.929 -0.036 2.139 "H4'1" I4B 22
I4B "H4'2" "2H4'" H 0 0 N N N N N N 26.217 9.178 3.306 1.434 1.082 0.847 "H4'2" I4B 23
I4B "H4'3" "3H4'" H 0 0 N N N N N N 27.505 10.120 2.739 1.483 1.640 2.536 "H4'3" I4B 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I4B C1 C2 DOUB Y N 1
I4B C1 C6 SING Y N 2
I4B C1 "C1'" SING N N 3
I4B C2 C3 SING Y N 4
I4B C2 H2 SING N N 5
I4B C3 C4 DOUB Y N 6
I4B C3 H3 SING N N 7
I4B C4 C5 SING Y N 8
I4B C4 H4 SING N N 9
I4B C5 C6 DOUB Y N 10
I4B C5 H5 SING N N 11
I4B C6 H6 SING N N 12
I4B "C1'" "C2'" SING N N 13
I4B "C1'" "H1'1" SING N N 14
I4B "C1'" "H1'2" SING N N 15
I4B "C2'" "C3'" SING N N 16
I4B "C2'" "C4'" SING N N 17
I4B "C2'" "H2'" SING N N 18
I4B "C3'" "H3'1" SING N N 19
I4B "C3'" "H3'2" SING N N 20
I4B "C3'" "H3'3" SING N N 21
I4B "C4'" "H4'1" SING N N 22
I4B "C4'" "H4'2" SING N N 23
I4B "C4'" "H4'3" SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I4B SMILES ACDLabs 10.04 c1ccccc1CC(C)C
I4B SMILES_CANONICAL CACTVS 3.341 CC(C)Cc1ccccc1
I4B SMILES CACTVS 3.341 CC(C)Cc1ccccc1
I4B SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)Cc1ccccc1
I4B SMILES "OpenEye OEToolkits" 1.5.0 CC(C)Cc1ccccc1
I4B InChI InChI 1.03 InChI=1S/C10H14/c1-9(2)8-10-6-4-3-5-7-10/h3-7,9H,8H2,1-2H3
I4B InChIKey InChI 1.03 KXUHSQYYJYAXGZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I4B "SYSTEMATIC NAME" ACDLabs 10.04 (2-methylpropyl)benzene
I4B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-methylpropylbenzene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I4B 'Create component' 1999-07-08 EBI
I4B 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
I4B C1 C 4.299 -0.375 1
I4B C2 C 3.000 -1.125 2
I4B C3 C 3.000 -2.625 3
I4B C4 C 4.299 -3.375 4
I4B C5 C 5.598 -2.625 5
I4B C6 C 5.598 -1.125 6
I4B "C1'" C 4.299 1.125 7
I4B "C2'" C 5.598 1.875 8
I4B "C3'" C 5.598 3.375 9
I4B "C4'" C 6.897 1.125 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
I4B C1 C2 DOUBLE NONE 1
I4B C1 C6 SINGLE NONE 2
I4B C1 "C1'" SINGLE NONE 3
I4B C2 C3 SINGLE NONE 4
I4B C3 C4 DOUBLE NONE 5
I4B C4 C5 SINGLE NONE 6
I4B C5 C6 DOUBLE NONE 7
I4B "C1'" "C2'" SINGLE NONE 8
I4B "C2'" "C3'" SINGLE NONE 9
I4B "C2'" "C4'" SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
I4B MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
I4B phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
I4B C1 S1 1
I4B C2 S1 1
I4B C3 S1 1
I4B C4 S1 1
I4B C5 S1 1
I4B C6 S1 1
I4B C1 F1 1
I4B C2 F1 1
I4B C3 F1 1
I4B C4 F1 1
I4B C5 F1 1
I4B C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id I4B
_pdbe_chem_comp_rdkit_properties.exactmw 134.110
_pdbe_chem_comp_rdkit_properties.amw 134.222
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.561
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.830
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.718
_pdbe_chem_comp_rdkit_properties.chi0v 5
_pdbe_chem_comp_rdkit_properties.chi1v 2.500
_pdbe_chem_comp_rdkit_properties.chi2v 0.750
_pdbe_chem_comp_rdkit_properties.chi3v 0.750
_pdbe_chem_comp_rdkit_properties.chi4v 0.438
_pdbe_chem_comp_rdkit_properties.chi0n 19
_pdbe_chem_comp_rdkit_properties.chi1n 9.500
_pdbe_chem_comp_rdkit_properties.chi2n 0.750
_pdbe_chem_comp_rdkit_properties.chi3n 0.750
_pdbe_chem_comp_rdkit_properties.chi4n 0.438
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.780
_pdbe_chem_comp_rdkit_properties.kappa1 1.155
_pdbe_chem_comp_rdkit_properties.kappa2 3.404
_pdbe_chem_comp_rdkit_properties.kappa3 2.219
_pdbe_chem_comp_rdkit_properties.Phi 0.393
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
I4B UniChem ChEBI 43261
I4B UniChem ZINC ZINC000001615327
I4B UniChem eMolecules 478865
I4B UniChem fdasrs FI94T26KGB
I4B UniChem NMRShiftDB 10016560
I4B UniChem ACTor 538-93-2
I4B UniChem BindingDb 50167954
I4B UniChem 'EPA CompTox Dashboard' DTXSID6027181
I4B UniChem ChemicalBook CB0328155
I4B UniChem Nikkaji J43.442F
I4B UniChem SureChEMBL SCHEMBL57393
I4B UniChem 'PubChem TPHARMA' 15165134
I4B UniChem PubChem 10870
I4B UniChem ACTor 28729-54-6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
I4B C1 0.778 -0.340 -0.112 ETKDGv3 1
I4B C2 1.481 -1.046 0.793 ETKDGv3 2
I4B C3 2.858 -0.642 1.147 ETKDGv3 3
I4B C4 3.410 0.434 0.573 ETKDGv3 4
I4B C5 2.643 1.220 -0.415 ETKDGv3 5
I4B C6 1.396 0.855 -0.740 ETKDGv3 6
I4B "C1'" -0.636 -0.730 -0.462 ETKDGv3 7
I4B "C2'" -1.646 -0.284 0.616 ETKDGv3 8
I4B "C3'" -1.734 1.247 0.711 ETKDGv3 9
I4B "C4'" -3.031 -0.871 0.317 ETKDGv3 10
I4B H2 1.047 -1.915 1.273 ETKDGv3 11
I4B H3 3.417 -1.218 1.872 ETKDGv3 12
I4B H4 4.417 0.731 0.833 ETKDGv3 13
I4B H5 3.091 2.092 -0.873 ETKDGv3 14
I4B H6 0.839 1.440 -1.462 ETKDGv3 15
I4B "H1'1" -0.680 -1.836 -0.578 ETKDGv3 16
I4B "H1'2" -0.918 -0.295 -1.446 ETKDGv3 17
I4B "H2'" -1.319 -0.677 1.605 ETKDGv3 18
I4B "H3'1" -2.494 1.542 1.467 ETKDGv3 19
I4B "H3'2" -2.016 1.685 -0.270 ETKDGv3 20
I4B "H3'3" -0.760 1.673 1.030 ETKDGv3 21
I4B "H4'1" -3.753 -0.578 1.110 ETKDGv3 22
I4B "H4'2" -2.981 -1.980 0.294 ETKDGv3 23
I4B "H4'3" -3.408 -0.507 -0.663 ETKDGv3 24
#