data_I04
#
_chem_comp.id I04
_chem_comp.name N-{(3R,4R)-4-[4-(2-FLUORO-6-HYDROXY-3-METHOXY-BENZOYL)-BENZOYLAMINO]-AZEPAN-3-YL}ISONICOTINAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H27 F N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-04-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 506.525
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I04
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1SVG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I04 F96 F96 F 0 1 N N N N N N 17.104 12.020 -3.421 -4.516 0.216 -1.837 F96 I04 1
I04 C76 C76 C 0 1 Y N N N N N 16.108 11.736 -4.289 -4.853 0.124 -0.532 C76 I04 2
I04 C75 C75 C 0 1 Y N N N N N 16.397 11.058 -5.464 -5.501 1.176 0.094 C75 I04 3
I04 O95 O95 O 0 1 N N N N N N 17.705 10.683 -5.669 -5.803 2.301 -0.609 O95 I04 4
I04 C98 C98 C 0 1 N N N N N N 18.050 10.253 -6.986 -6.464 3.188 0.296 C98 I04 5
I04 C74 C74 C 0 1 Y N N N N N 15.343 10.790 -6.387 -5.847 1.084 1.435 C74 I04 6
I04 C73 C73 C 0 1 Y N N N N N 14.060 11.178 -6.092 -5.545 -0.054 2.159 C73 I04 7
I04 C72 C72 C 0 1 Y N N N N N 13.750 11.859 -4.868 -4.892 -1.114 1.551 C72 I04 8
I04 O92 O92 O 0 1 N N N N N N 12.542 12.219 -4.609 -4.597 -2.231 2.264 O92 I04 9
I04 C71 C71 C 0 1 Y N N N N N 14.819 12.139 -3.957 -4.538 -1.031 0.196 C71 I04 10
I04 C61 C61 C 0 1 N N N N N N 14.648 12.852 -2.722 -3.843 -2.152 -0.459 C61 I04 11
I04 O62 O62 O 0 1 N N N N N N 15.315 13.897 -2.630 -4.485 -3.048 -0.972 O62 I04 12
I04 C54 C54 C 0 1 Y N N N N N 13.838 12.457 -1.565 -2.364 -2.188 -0.493 C54 I04 13
I04 C55 C55 C 0 1 Y N N N N N 13.606 11.096 -1.266 -1.706 -3.192 -1.206 C55 I04 14
I04 C56 C56 C 0 1 Y N N N N N 12.884 10.720 -0.147 -0.329 -3.225 -1.238 C56 I04 15
I04 C53 C53 C 0 1 Y N N N N N 13.311 13.453 -0.726 -1.627 -1.214 0.183 C53 I04 16
I04 C52 C52 C 0 1 Y N N N N N 12.592 13.082 0.379 -0.249 -1.251 0.156 C52 I04 17
I04 C51 C51 C 0 1 Y N N N N N 12.379 11.732 0.682 0.408 -2.255 -0.557 C51 I04 18
I04 C42 C42 C 0 1 N N N N N N 11.629 11.411 1.883 1.887 -2.291 -0.591 C42 I04 19
I04 O43 O43 O 0 1 N N N N N N 11.529 12.258 2.756 2.460 -3.164 -1.212 O43 I04 20
I04 N41 N41 N 0 1 N N N N N N 11.062 10.180 2.009 2.599 -1.354 0.067 N41 I04 21
I04 C37 C37 C 0 1 N N R N N N 10.501 9.683 3.226 4.064 -1.389 0.033 C37 I04 22
I04 C36 C36 C 0 1 N N N N N N 11.634 9.269 4.206 4.588 -2.344 1.145 C36 I04 23
I04 C35 C35 C 0 1 N N N N N N 12.689 8.330 3.595 6.004 -2.614 0.934 C35 I04 24
I04 C34 C34 C 0 1 N N N N N N 12.266 6.863 3.585 6.890 -1.365 0.991 C34 I04 25
I04 N33 N33 N 0 1 N N N N N N 11.089 6.613 2.710 6.924 -0.812 -0.342 N33 I04 26
I04 C32 C32 C 0 1 N N N N N N 9.864 7.086 3.333 5.943 0.290 -0.422 C32 I04 27
I04 C31 C31 C 0 1 N N R N N N 9.519 8.530 2.883 4.608 -0.007 0.280 C31 I04 28
I04 N23 N23 N 0 1 N N N N N N 8.194 8.752 3.413 3.617 0.971 -0.175 N23 I04 29
I04 C21 C21 C 0 1 N N N N N N 7.114 8.973 2.575 3.531 2.173 0.426 C21 I04 30
I04 O22 O22 O 0 1 N N N N N N 7.288 8.994 1.335 4.276 2.447 1.347 O22 I04 31
I04 C14 C14 C 0 1 Y N N N N N 5.778 9.112 3.166 2.528 3.162 -0.034 C14 I04 32
I04 C13 C13 C 0 1 Y N N N N N 4.685 9.050 2.280 2.422 4.416 0.576 C13 I04 33
I04 C12 C12 C 0 1 Y N N N N N 3.404 9.132 2.750 1.473 5.307 0.115 C12 I04 34
I04 N11 N11 N 0 1 Y N N N N N 3.160 9.244 4.113 0.676 4.989 -0.885 N11 I04 35
I04 C16 C16 C 0 1 Y N N N N N 4.212 9.298 5.018 0.742 3.819 -1.488 C16 I04 36
I04 C15 C15 C 0 1 Y N N N N N 5.519 9.214 4.544 1.666 2.870 -1.095 C15 I04 37
I04 H981 1H98 H 0 0 N N N N N N 17.767 11.041 -7.723 -5.800 3.419 1.129 H981 I04 38
I04 H982 2H98 H 0 0 N N N N N N 19.110 9.949 -7.152 -6.727 4.109 -0.225 H982 I04 39
I04 H983 3H98 H 0 0 N N N N N N 17.371 9.426 -7.299 -7.369 2.713 0.674 H983 I04 40
I04 H74 H74 H 0 1 N N N N N N 15.523 10.274 -7.345 -6.355 1.906 1.916 H74 I04 41
I04 H73 H73 H 0 1 N N N N N N 13.281 10.943 -6.836 -5.819 -0.117 3.202 H73 I04 42
I04 H92 H92 H 0 1 N N N N N N 12.337 12.670 -3.798 -5.383 -2.794 2.240 H92 I04 43
I04 H55 H55 H 0 1 N N N N N N 14.000 10.304 -1.925 -2.277 -3.943 -1.733 H55 I04 44
I04 H56 H56 H 0 1 N N N N N N 12.717 9.653 0.076 0.180 -4.001 -1.790 H56 I04 45
I04 H53 H53 H 0 1 N N N N N N 13.462 14.526 -0.935 -2.135 -0.438 0.735 H53 I04 46
I04 H52 H52 H 0 1 N N N N N N 12.183 13.874 1.028 0.321 -0.501 0.684 H52 I04 47
I04 H41 H41 H 0 1 N N N N N N 11.057 9.611 1.163 2.142 -0.656 0.562 H41 I04 48
I04 H37 H37 H 0 1 N N N N N N 9.917 10.473 3.754 4.398 -1.745 -0.942 H37 I04 49
I04 H361 1H36 H 0 0 N N N N N N 11.204 8.821 5.132 4.449 -1.875 2.119 H361 I04 50
I04 H362 2H36 H 0 0 N N N N N N 12.122 10.172 4.641 4.031 -3.280 1.111 H362 I04 51
I04 H351 1H35 H 0 0 N N N N N N 13.672 8.454 4.107 6.341 -3.315 1.698 H351 I04 52
I04 H352 2H35 H 0 0 N N N N N N 12.971 8.667 2.570 6.127 -3.084 -0.042 H352 I04 53
I04 H341 1H34 H 0 0 N N N N N N 12.082 6.492 4.620 6.466 -0.639 1.685 H341 I04 54
I04 H342 2H34 H 0 0 N N N N N N 13.120 6.202 3.307 7.897 -1.638 1.307 H342 I04 55
I04 H33 H33 H 0 1 N N N N N N 11.020 5.631 2.445 7.836 -0.398 -0.461 H33 I04 56
I04 H321 1H32 H 0 0 N N N N N N 9.914 7.006 4.444 6.383 1.179 0.028 H321 I04 57
I04 H322 2H32 H 0 0 N N N N N N 9.015 6.387 3.147 5.742 0.499 -1.472 H322 I04 58
I04 H31 H31 H 0 1 N N N N N N 9.598 8.574 1.772 4.747 0.118 1.354 H31 I04 59
I04 H23 H23 H 0 1 N N N N N N 8.014 8.753 4.417 3.022 0.752 -0.910 H23 I04 60
I04 H13 H13 H 0 1 N N N N N N 4.836 8.935 1.193 3.073 4.683 1.396 H13 I04 61
I04 H12 H12 H 0 1 N N N N N N 2.568 9.108 2.030 1.384 6.278 0.580 H12 I04 62
I04 H16 H16 H 0 1 N N N N N N 4.012 9.406 6.097 0.068 3.601 -2.304 H16 I04 63
I04 H15 H15 H 0 1 N N N N N N 6.354 9.228 5.264 1.715 1.913 -1.594 H15 I04 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I04 F96 C76 SING N N 1
I04 C76 C75 DOUB Y N 2
I04 C76 C71 SING Y N 3
I04 C75 O95 SING N N 4
I04 C75 C74 SING Y N 5
I04 O95 C98 SING N N 6
I04 C98 H981 SING N N 7
I04 C98 H982 SING N N 8
I04 C98 H983 SING N N 9
I04 C74 C73 DOUB Y N 10
I04 C74 H74 SING N N 11
I04 C73 C72 SING Y N 12
I04 C73 H73 SING N N 13
I04 C72 O92 SING N N 14
I04 C72 C71 DOUB Y N 15
I04 O92 H92 SING N N 16
I04 C71 C61 SING N N 17
I04 C61 O62 DOUB N N 18
I04 C61 C54 SING N N 19
I04 C54 C55 SING Y N 20
I04 C54 C53 DOUB Y N 21
I04 C55 C56 DOUB Y N 22
I04 C55 H55 SING N N 23
I04 C56 C51 SING Y N 24
I04 C56 H56 SING N N 25
I04 C53 C52 SING Y N 26
I04 C53 H53 SING N N 27
I04 C52 C51 DOUB Y N 28
I04 C52 H52 SING N N 29
I04 C51 C42 SING N N 30
I04 C42 O43 DOUB N N 31
I04 C42 N41 SING N N 32
I04 N41 C37 SING N N 33
I04 N41 H41 SING N N 34
I04 C37 C36 SING N N 35
I04 C37 C31 SING N N 36
I04 C37 H37 SING N N 37
I04 C36 C35 SING N N 38
I04 C36 H361 SING N N 39
I04 C36 H362 SING N N 40
I04 C35 C34 SING N N 41
I04 C35 H351 SING N N 42
I04 C35 H352 SING N N 43
I04 C34 N33 SING N N 44
I04 C34 H341 SING N N 45
I04 C34 H342 SING N N 46
I04 N33 C32 SING N N 47
I04 N33 H33 SING N N 48
I04 C32 C31 SING N N 49
I04 C32 H321 SING N N 50
I04 C32 H322 SING N N 51
I04 C31 N23 SING N N 52
I04 C31 H31 SING N N 53
I04 N23 C21 SING N N 54
I04 N23 H23 SING N N 55
I04 C21 O22 DOUB N N 56
I04 C21 C14 SING N N 57
I04 C14 C13 SING Y N 58
I04 C14 C15 DOUB Y N 59
I04 C13 C12 DOUB Y N 60
I04 C13 H13 SING N N 61
I04 C12 N11 SING Y N 62
I04 C12 H12 SING N N 63
I04 N11 C16 DOUB Y N 64
I04 C16 C15 SING Y N 65
I04 C16 H16 SING N N 66
I04 C15 H15 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I04 SMILES ACDLabs 10.04 Fc1c(OC)ccc(O)c1C(=O)c2ccc(cc2)C(=O)NC4CCCNCC4NC(=O)c3ccncc3
I04 SMILES_CANONICAL CACTVS 3.341 COc1ccc(O)c(c1F)C(=O)c2ccc(cc2)C(=O)N[C@@H]3CCCNC[C@H]3NC(=O)c4ccncc4
I04 SMILES CACTVS 3.341 COc1ccc(O)c(c1F)C(=O)c2ccc(cc2)C(=O)N[CH]3CCCNC[CH]3NC(=O)c4ccncc4
I04 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COc1ccc(c(c1F)C(=O)c2ccc(cc2)C(=O)N[C@@H]3CCCNC[C@H]3NC(=O)c4ccncc4)O
I04 SMILES "OpenEye OEToolkits" 1.5.0 COc1ccc(c(c1F)C(=O)c2ccc(cc2)C(=O)NC3CCCNCC3NC(=O)c4ccncc4)O
I04 InChI InChI 1.03 InChI=1S/C27H27FN4O5/c1-37-22-9-8-21(33)23(24(22)28)25(34)16-4-6-17(7-5-16)26(35)31-19-3-2-12-30-15-20(19)32-27(36)18-10-13-29-14-11-18/h4-11,13-14,19-20,30,33H,2-3,12,15H2,1H3,(H,31,35)(H,32,36)/t19-,20-/m1/s1
I04 InChIKey InChI 1.03 KGSQEYHTCBVKAX-WOJBJXKFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I04 "SYSTEMATIC NAME" ACDLabs 10.04 N-{(3R,4R)-4-[({4-[(2-fluoro-6-hydroxy-3-methoxyphenyl)carbonyl]phenyl}carbonyl)amino]azepan-3-yl}pyridine-4-carboxamide
I04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-[(3R,4R)-4-[[4-(2-fluoro-6-hydroxy-3-methoxy-phenyl)carbonylphenyl]carbonylamino]azepan-3-yl]pyridine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I04 'Create component' 2004-04-06 RCSB
I04 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
I04 F96 F 11.634 4.683 1
I04 C76 C 10.150 4.907 2
I04 C75 C 9.603 6.303 3
I04 O95 O 10.538 7.476 4
I04 C98 C 9.990 8.872 5
I04 C74 C 8.119 6.527 6
I04 C73 C 7.184 5.354 7
I04 C72 C 7.732 3.958 8
I04 O92 O 6.797 2.785 9
I04 C71 C 9.215 3.734 10
I04 C61 C 9.763 2.338 11
I04 O62 O 11.246 2.114 12
I04 C54 C 8.828 1.165 13
I04 C55 C 9.376 -0.231 14
I04 C56 C 8.441 -1.404 15
I04 C53 C 7.345 1.388 16
I04 C52 C 6.410 0.216 17
I04 C51 C 6.958 -1.181 18
I04 C42 C 6.022 -2.353 19
I04 O43 O 4.539 -2.130 20
I04 N41 N 6.570 -3.750 21
I04 C37 C 5.635 -4.922 22
I04 C36 C 4.173 -4.589 23
I04 C35 C 3.000 -5.524 24
I04 C34 C 3.000 -7.024 25
I04 N33 N 4.173 -7.959 26
I04 C32 C 5.635 -7.625 27
I04 C31 C 6.286 -6.274 28
I04 N23 N 7.786 -6.274 29
I04 C21 C 8.536 -7.573 30
I04 O22 O 7.786 -8.872 31
I04 C14 C 10.036 -7.573 32
I04 C13 C 10.786 -6.274 33
I04 C12 C 12.286 -6.274 34
I04 N11 N 13.036 -7.573 35
I04 C16 C 12.286 -8.872 36
I04 C15 C 10.786 -8.872 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
I04 F96 C76 SINGLE NONE 1
I04 C76 C75 DOUBLE NONE 2
I04 C76 C71 SINGLE NONE 3
I04 C75 O95 SINGLE NONE 4
I04 C75 C74 SINGLE NONE 5
I04 O95 C98 SINGLE NONE 6
I04 C74 C73 DOUBLE NONE 7
I04 C73 C72 SINGLE NONE 8
I04 C72 O92 SINGLE NONE 9
I04 C72 C71 DOUBLE NONE 10
I04 C71 C61 SINGLE NONE 11
I04 C61 O62 DOUBLE NONE 12
I04 C61 C54 SINGLE NONE 13
I04 C54 C55 DOUBLE NONE 14
I04 C54 C53 SINGLE NONE 15
I04 C55 C56 SINGLE NONE 16
I04 C56 C51 DOUBLE NONE 17
I04 C53 C52 DOUBLE NONE 18
I04 C52 C51 SINGLE NONE 19
I04 C51 C42 SINGLE NONE 20
I04 C42 O43 DOUBLE NONE 21
I04 C42 N41 SINGLE NONE 22
I04 C37 N41 SINGLE BEGINWEDGE 23
I04 C37 C36 SINGLE NONE 24
I04 C37 C31 SINGLE NONE 25
I04 C36 C35 SINGLE NONE 26
I04 C35 C34 SINGLE NONE 27
I04 C34 N33 SINGLE NONE 28
I04 N33 C32 SINGLE NONE 29
I04 C32 C31 SINGLE NONE 30
I04 C31 N23 SINGLE BEGINDASH 31
I04 N23 C21 SINGLE NONE 32
I04 C21 O22 DOUBLE NONE 33
I04 C21 C14 SINGLE NONE 34
I04 C14 C13 DOUBLE NONE 35
I04 C14 C15 SINGLE NONE 36
I04 C13 C12 SINGLE NONE 37
I04 C12 N11 DOUBLE NONE 38
I04 N11 C16 SINGLE NONE 39
I04 C16 C15 DOUBLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
I04 MurckoScaffold S1 scaffold 'O=C(N[C@@H]1CCCNC[C@H]1NC(=O)c1ccncc1)c1ccc(C(=O)c2ccccc2)cc1' InChI=1S/C26H26N4O3/c31-24(18-5-2-1-3-6-18)19-8-10-20(11-9-19)25(32)29-22-7-4-14-28-17-23(22)30-26(33)21-12-15-27-16-13-21/h1-3,5-6,8-13,15-16,22-23,28H,4,7,14,17H2,(H,29,32)(H,30,33)/t22-,23-/m1/s1 CJVXPIZRIUXRPD-DHIUTWEWSA-N
I04 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
I04 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
I04 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
I04 C76 S1 1
I04 C75 S1 1
I04 C74 S1 1
I04 C73 S1 1
I04 C72 S1 1
I04 C71 S1 1
I04 C61 S1 1
I04 O62 S1 1
I04 C54 S1 1
I04 C55 S1 1
I04 C56 S1 1
I04 C53 S1 1
I04 C52 S1 1
I04 C51 S1 1
I04 C42 S1 1
I04 O43 S1 1
I04 N41 S1 1
I04 C37 S1 1
I04 C36 S1 1
I04 C35 S1 1
I04 C34 S1 1
I04 N33 S1 1
I04 C32 S1 1
I04 C31 S1 1
I04 N23 S1 1
I04 C21 S1 1
I04 O22 S1 1
I04 C14 S1 1
I04 C13 S1 1
I04 C12 S1 1
I04 N11 S1 1
I04 C16 S1 1
I04 C15 S1 1
I04 N41 F1 1
I04 C42 F1 1
I04 O43 F1 1
I04 C51 F1 1
I04 N23 F1 2
I04 C21 F1 2
I04 O22 F1 2
I04 C14 F1 2
I04 C76 F2 1
I04 C75 F2 1
I04 C74 F2 1
I04 C73 F2 1
I04 C72 F2 1
I04 C71 F2 1
I04 C54 F2 2
I04 C55 F2 2
I04 C56 F2 2
I04 C51 F2 2
I04 C52 F2 2
I04 C53 F2 2
I04 C12 F3 1
I04 C13 F3 1
I04 C14 F3 1
I04 C15 F3 1
I04 C16 F3 1
I04 N11 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id I04
_pdbe_chem_comp_rdkit_properties.exactmw 506.197
_pdbe_chem_comp_rdkit_properties.amw 506.534
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.259
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 250.811
_pdbe_chem_comp_rdkit_properties.tpsa 129.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.303
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.056
_pdbe_chem_comp_rdkit_properties.chi0v 17.708
_pdbe_chem_comp_rdkit_properties.chi1v 9.453
_pdbe_chem_comp_rdkit_properties.chi2v 4.124
_pdbe_chem_comp_rdkit_properties.chi3v 4.124
_pdbe_chem_comp_rdkit_properties.chi4v 2.491
_pdbe_chem_comp_rdkit_properties.chi0n 44.708
_pdbe_chem_comp_rdkit_properties.chi1n 22.702
_pdbe_chem_comp_rdkit_properties.chi2n 4.124
_pdbe_chem_comp_rdkit_properties.chi3n 4.124
_pdbe_chem_comp_rdkit_properties.chi4n 2.491
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.310
_pdbe_chem_comp_rdkit_properties.kappa1 8.353
_pdbe_chem_comp_rdkit_properties.kappa2 11.616
_pdbe_chem_comp_rdkit_properties.kappa3 5.920
_pdbe_chem_comp_rdkit_properties.Phi 2.623
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
I04 UniChem ZINC ZINC000003818055
I04 UniChem 'PubChem TPHARMA' 14811175
I04 UniChem PubChem 657002
I04 UniChem BindingDb 11823
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
I04 F96 3.832 -0.592 1.542 ETKDGv3 1
I04 C76 3.679 -0.649 2.890 ETKDGv3 2
I04 C75 3.830 -1.821 3.523 ETKDGv3 3
I04 O95 4.103 -2.967 2.762 ETKDGv3 4
I04 C98 4.244 -4.271 3.312 ETKDGv3 5
I04 C74 3.708 -1.867 5.002 ETKDGv3 6
I04 C73 3.448 -0.751 5.692 ETKDGv3 7
I04 C72 3.254 0.538 4.994 ETKDGv3 8
I04 O92 2.932 1.657 5.766 ETKDGv3 9
I04 C71 3.365 0.592 3.647 ETKDGv3 10
I04 C61 3.170 1.848 2.892 ETKDGv3 11
I04 O62 3.911 2.836 3.147 ETKDGv3 12
I04 C54 2.155 1.954 1.816 ETKDGv3 13
I04 C55 1.089 1.132 1.778 ETKDGv3 14
I04 C56 0.092 1.242 0.696 ETKDGv3 15
I04 C53 2.300 2.986 0.760 ETKDGv3 16
I04 C52 1.400 3.080 -0.227 ETKDGv3 17
I04 C51 0.230 2.167 -0.273 ETKDGv3 18
I04 C42 -0.728 2.260 -1.403 ETKDGv3 19
I04 O43 -0.358 2.815 -2.473 ETKDGv3 20
I04 N41 -2.067 1.744 -1.295 ETKDGv3 21
I04 C37 -2.933 1.510 -2.459 ETKDGv3 22
I04 C36 -4.321 2.117 -2.142 ETKDGv3 23
I04 C35 -5.225 2.309 -3.364 ETKDGv3 24
I04 C34 -5.466 1.013 -4.134 ETKDGv3 25
I04 N33 -4.247 0.661 -4.870 ETKDGv3 26
I04 C32 -3.454 -0.376 -4.199 ETKDGv3 27
I04 C31 -3.021 -0.020 -2.749 ETKDGv3 28
I04 N23 -1.724 -0.660 -2.481 ETKDGv3 29
I04 C21 -1.474 -1.479 -1.323 ETKDGv3 30
I04 O22 -2.442 -1.862 -0.612 ETKDGv3 31
I04 C14 -0.099 -1.902 -0.948 ETKDGv3 32
I04 C13 0.996 -1.256 -1.393 ETKDGv3 33
I04 C12 2.336 -1.707 -0.971 ETKDGv3 34
I04 N11 2.462 -2.713 -0.156 ETKDGv3 35
I04 C16 1.317 -3.413 0.355 ETKDGv3 36
I04 C15 0.084 -3.041 -0.011 ETKDGv3 37
I04 H981 3.309 -4.569 3.831 ETKDGv3 38
I04 H982 5.099 -4.297 4.019 ETKDGv3 39
I04 H983 4.439 -4.991 2.490 ETKDGv3 40
I04 H74 3.834 -2.798 5.539 ETKDGv3 41
I04 H73 3.363 -0.793 6.770 ETKDGv3 42
I04 H92 2.718 2.564 5.370 ETKDGv3 43
I04 H55 0.938 0.376 2.538 ETKDGv3 44
I04 H56 -0.721 0.531 0.690 ETKDGv3 45
I04 H53 3.146 3.663 0.772 ETKDGv3 46
I04 H52 1.531 3.837 -0.990 ETKDGv3 47
I04 H41 -2.432 1.457 -0.360 ETKDGv3 48
I04 H37 -2.510 2.028 -3.348 ETKDGv3 49
I04 H361 -4.174 3.121 -1.685 ETKDGv3 50
I04 H362 -4.849 1.498 -1.383 ETKDGv3 51
I04 H351 -6.204 2.704 -3.016 ETKDGv3 52
I04 H352 -4.782 3.071 -4.043 ETKDGv3 53
I04 H341 -5.806 0.200 -3.454 ETKDGv3 54
I04 H342 -6.293 1.197 -4.857 ETKDGv3 55
I04 H33 -4.526 0.281 -5.806 ETKDGv3 56
I04 H321 -2.551 -0.552 -4.823 ETKDGv3 57
I04 H322 -4.016 -1.338 -4.188 ETKDGv3 58
I04 H31 -3.786 -0.452 -2.068 ETKDGv3 59
I04 H23 -0.942 -0.447 -3.139 ETKDGv3 60
I04 H13 0.932 -0.385 -2.029 ETKDGv3 61
I04 H12 3.217 -1.195 -1.332 ETKDGv3 62
I04 H16 1.456 -4.241 1.037 ETKDGv3 63
I04 H15 -0.771 -3.579 0.378 ETKDGv3 64
#