data_HTO
#
_chem_comp.id HTO
_chem_comp.name HEPTANE-1,2,3-TRIOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H16 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 148.200
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HTO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2PIL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HTO C1 C1 C 0 1 N N N N N N 64.486 -24.057 -8.633 -0.569 -0.397 -2.765 C1 HTO 1
HTO O1 O1 O 0 1 N N N N N N 65.724 -24.249 -9.321 0.190 -0.402 -3.975 O1 HTO 2
HTO C2 C2 C 0 1 N N R N N N 64.242 -25.301 -7.728 0.379 -0.304 -1.568 C2 HTO 3
HTO O2 O2 O 0 1 N N N N N N 65.522 -25.900 -7.447 1.142 0.899 -1.657 O2 HTO 4
HTO C3 C3 C 0 1 N N R N N N 63.560 -24.962 -6.335 -0.434 -0.298 -0.272 C3 HTO 5
HTO O3 O3 O 0 1 N N N N N N 62.384 -24.223 -6.655 -1.316 0.825 -0.268 O3 HTO 6
HTO C4 C4 C 0 1 N N N N N N 64.437 -24.184 -5.358 0.514 -0.206 0.924 C4 HTO 7
HTO C5 C5 C 0 1 N N N N N N 63.795 -23.932 -4.001 -0.299 -0.200 2.220 C5 HTO 8
HTO C6 C6 C 0 1 N N N N N N 64.687 -23.032 -3.177 0.649 -0.108 3.417 C6 HTO 9
HTO C7 C7 C 0 1 N N N N N N 64.057 -22.812 -1.809 -0.164 -0.102 4.713 C7 HTO 10
HTO H11 1H1 H 0 1 N N N N N N 64.451 -23.097 -8.066 -1.151 -1.316 -2.697 H11 HTO 11
HTO H12 2H1 H 0 1 N N N N N N 63.635 -23.852 -9.324 -1.242 0.460 -2.762 H12 HTO 12
HTO HO1 HO1 H 0 1 N N N N N N 65.872 -23.490 -9.873 -0.443 -0.461 -4.703 HO1 HTO 13
HTO H2 H2 H 0 1 N N N N N N 63.547 -25.974 -8.282 1.051 -1.162 -1.570 H2 HTO 14
HTO HO2 HO2 H 0 1 N N N N N N 65.373 -26.658 -6.895 0.510 1.632 -1.651 HO2 HTO 15
HTO H3 H3 H 0 1 N N N N N N 63.350 -25.914 -5.795 -1.016 -1.217 -0.204 H3 HTO 16
HTO HO3 HO3 H 0 1 N N N N N N 61.975 -24.020 -5.821 -0.762 1.615 -0.330 HO3 HTO 17
HTO H41 1H4 H 0 1 N N N N N N 65.423 -24.688 -5.233 1.096 0.712 0.856 H41 HTO 18
HTO H42 2H4 H 0 1 N N N N N N 64.770 -23.223 -5.814 1.186 -1.064 0.922 H42 HTO 19
HTO H51 1H5 H 0 1 N N N N N N 62.760 -23.527 -4.094 -0.881 -1.119 2.288 H51 HTO 20
HTO H52 2H5 H 0 1 N N N N N N 63.548 -24.880 -3.469 -0.972 0.657 2.223 H52 HTO 21
HTO H61 1H6 H 0 1 N N N N N N 65.728 -23.422 -3.104 1.231 0.810 3.349 H61 HTO 22
HTO H62 2H6 H 0 1 N N N N N N 64.913 -22.071 -3.696 1.321 -0.965 3.415 H62 HTO 23
HTO H71 1H7 H 0 1 N N N N N N 64.715 -22.148 -1.201 0.511 -0.036 5.566 H71 HTO 24
HTO H72 2H7 H 0 1 N N N N N N 63.015 -22.421 -1.882 -0.837 0.755 4.716 H72 HTO 25
HTO H73 3H7 H 0 1 N N N N N N 63.830 -23.772 -1.289 -0.746 -1.020 4.781 H73 HTO 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HTO C1 O1 SING N N 1
HTO C1 C2 SING N N 2
HTO C1 H11 SING N N 3
HTO C1 H12 SING N N 4
HTO O1 HO1 SING N N 5
HTO C2 O2 SING N N 6
HTO C2 C3 SING N N 7
HTO C2 H2 SING N N 8
HTO O2 HO2 SING N N 9
HTO C3 O3 SING N N 10
HTO C3 C4 SING N N 11
HTO C3 H3 SING N N 12
HTO O3 HO3 SING N N 13
HTO C4 C5 SING N N 14
HTO C4 H41 SING N N 15
HTO C4 H42 SING N N 16
HTO C5 C6 SING N N 17
HTO C5 H51 SING N N 18
HTO C5 H52 SING N N 19
HTO C6 C7 SING N N 20
HTO C6 H61 SING N N 21
HTO C6 H62 SING N N 22
HTO C7 H71 SING N N 23
HTO C7 H72 SING N N 24
HTO C7 H73 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HTO SMILES ACDLabs 10.04 OC(CCCC)C(O)CO
HTO SMILES_CANONICAL CACTVS 3.341 CCCC[C@@H](O)[C@H](O)CO
HTO SMILES CACTVS 3.341 CCCC[CH](O)[CH](O)CO
HTO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCC[C@H]([C@@H](CO)O)O
HTO SMILES "OpenEye OEToolkits" 1.5.0 CCCCC(C(CO)O)O
HTO InChI InChI 1.03 InChI=1S/C7H16O3/c1-2-3-4-6(9)7(10)5-8/h6-10H,2-5H2,1H3/t6-,7-/m1/s1
HTO InChIKey InChI 1.03 HXYCHJFUBNTKQR-RNFRBKRXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HTO "SYSTEMATIC NAME" ACDLabs 10.04 (2R,3R)-heptane-1,2,3-triol
HTO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R)-heptane-1,2,3-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HTO 'Create component' 1999-07-08 PDBJ
HTO 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id HTO
_pdbe_chem_comp_drugbank_details.drugbank_id DB04079
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Heptane-1,2,3-Triol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HTO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04079
_pdbe_chem_comp_drugbank_classification.parent 'Fatty alcohols'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Fatty Acyls'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
HTO DB04079 Rhodopsin Humans P08100 unknown 1
HTO DB04079 'Fimbrial protein' 'Neisseria gonorrhoeae' P02974 unknown 2
HTO DB04079 'Fe(3+) dicitrate transport protein FecA' 'Escherichia coli (strain K12)' P13036 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HTO C1 C 10.794 -0.375 1
HTO O1 O 12.093 0.375 2
HTO C2 C 9.495 0.375 3
HTO O2 O 9.495 1.875 4
HTO C3 C 8.196 -0.375 5
HTO O3 O 8.196 -1.875 6
HTO C4 C 6.897 0.375 7
HTO C5 C 5.598 -0.375 8
HTO C6 C 4.299 0.375 9
HTO C7 C 3.000 -0.375 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HTO C1 O1 SINGLE NONE 1
HTO C1 C2 SINGLE NONE 2
HTO C2 O2 SINGLE BEGINDASH 3
HTO C2 C3 SINGLE NONE 4
HTO C3 O3 SINGLE BEGINDASH 5
HTO C3 C4 SINGLE NONE 6
HTO C4 C5 SINGLE NONE 7
HTO C5 C6 SINGLE NONE 8
HTO C6 C7 SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id HTO
_pdbe_chem_comp_rdkit_properties.exactmw 148.110
_pdbe_chem_comp_rdkit_properties.amw 148.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 84.051
_pdbe_chem_comp_rdkit_properties.tpsa 60.690
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.109
_pdbe_chem_comp_rdkit_properties.CrippenMR 38.624
_pdbe_chem_comp_rdkit_properties.chi0v 4.725
_pdbe_chem_comp_rdkit_properties.chi1v 2.112
_pdbe_chem_comp_rdkit_properties.chi2v 0.537
_pdbe_chem_comp_rdkit_properties.chi3v 0.537
_pdbe_chem_comp_rdkit_properties.chi4v 0.191
_pdbe_chem_comp_rdkit_properties.chi0n 20.725
_pdbe_chem_comp_rdkit_properties.chi1n 9.837
_pdbe_chem_comp_rdkit_properties.chi2n 0.537
_pdbe_chem_comp_rdkit_properties.chi3n 0.537
_pdbe_chem_comp_rdkit_properties.chi4n 0.191
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.120
_pdbe_chem_comp_rdkit_properties.kappa1 1.259
_pdbe_chem_comp_rdkit_properties.kappa2 5.649
_pdbe_chem_comp_rdkit_properties.kappa3 3.821
_pdbe_chem_comp_rdkit_properties.Phi 0.711
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HTO UniChem DrugBank DB04079
HTO UniChem ChEBI 43208
HTO UniChem ZINC ZINC000002043148
HTO UniChem PubChem 444397
HTO UniChem 'Probes And Drugs' PD059397
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HTO C1 -3.327 -0.515 0.379 ETKDGv3 1
HTO O1 -3.185 -0.953 1.705 ETKDGv3 2
HTO C2 -2.000 -0.655 -0.387 ETKDGv3 3
HTO O2 -2.207 -0.340 -1.741 ETKDGv3 4
HTO C3 -0.894 0.256 0.200 ETKDGv3 5
HTO O3 -1.290 1.607 0.186 ETKDGv3 6
HTO C4 0.448 0.064 -0.538 ETKDGv3 7
HTO C5 1.585 0.847 0.139 ETKDGv3 8
HTO C6 2.911 0.749 -0.631 ETKDGv3 9
HTO C7 3.547 -0.638 -0.539 ETKDGv3 10
HTO H11 -4.094 -1.152 -0.112 ETKDGv3 11
HTO H12 -3.699 0.535 0.338 ETKDGv3 12
HTO HO1 -2.970 -0.154 2.252 ETKDGv3 13
HTO H2 -1.659 -1.714 -0.299 ETKDGv3 14
HTO HO2 -2.653 -1.124 -2.155 ETKDGv3 15
HTO H3 -0.734 -0.040 1.260 ETKDGv3 16
HTO HO3 -1.378 1.887 -0.762 ETKDGv3 17
HTO H41 0.700 -1.018 -0.538 ETKDGv3 18
HTO H42 0.347 0.396 -1.595 ETKDGv3 19
HTO H51 1.303 1.921 0.193 ETKDGv3 20
HTO H52 1.727 0.484 1.181 ETKDGv3 21
HTO H61 2.754 1.018 -1.698 ETKDGv3 22
HTO H62 3.622 1.486 -0.200 ETKDGv3 23
HTO H71 3.659 -0.946 0.522 ETKDGv3 24
HTO H72 2.935 -1.389 -1.080 ETKDGv3 25
HTO H73 4.554 -0.613 -1.007 ETKDGv3 26
#