data_HP6
#
_chem_comp.id HP6
_chem_comp.name HEPTANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H16"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-08-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 100.202
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HP6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ALG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HP6 C20 C20 C 0 1 N N N N N N -14.133 31.030 -7.776 3.748 0.371 0.000 C20 HP6 1
HP6 C21 C21 C 0 1 N N N N N N -13.716 31.560 -6.402 2.498 -0.512 0.000 C21 HP6 2
HP6 C22 C22 C 0 1 N N N N N N -12.484 30.822 -5.875 1.249 0.371 0.000 C22 HP6 3
HP6 C23 C23 C 0 1 N N N N N N -12.089 31.368 -4.502 0.000 -0.512 0.000 C23 HP6 4
HP6 C24 C24 C 0 1 N N N N N N -10.741 30.810 -4.043 -1.249 0.371 0.000 C24 HP6 5
HP6 C25 C25 C 0 1 N N N N N N -10.242 31.568 -2.812 -2.498 -0.512 0.000 C25 HP6 6
HP6 C26 C26 C 0 1 N N N N N N -8.862 31.063 -2.384 -3.748 0.371 0.000 C26 HP6 7
HP6 H201 1H20 H 0 0 N N N N N N -14.292 29.927 -7.759 3.748 1.001 0.889 H201 HP6 8
HP6 H202 2H20 H 0 0 N N N N N N -15.031 31.568 -8.160 4.638 -0.258 0.000 H202 HP6 9
HP6 H203 3H20 H 0 0 N N N N N N -13.289 31.069 -8.504 3.748 1.000 -0.891 H203 HP6 10
HP6 H211 1H21 H 0 0 N N N N N N -14.560 31.521 -5.674 2.498 -1.142 -0.889 H211 HP6 11
HP6 H212 2H21 H 0 0 N N N N N N -13.557 32.663 -6.419 2.498 -1.141 0.891 H212 HP6 12
HP6 H221 1H22 H 0 0 N N N N N N -11.636 30.858 -6.598 1.249 1.001 0.889 H221 HP6 13
HP6 H222 2H22 H 0 0 N N N N N N -12.636 29.718 -5.856 1.249 1.000 -0.891 H222 HP6 14
HP6 H231 1H23 H 0 0 N N N N N N -12.886 31.183 -3.745 0.000 -1.142 -0.889 H231 HP6 15
HP6 H232 2H23 H 0 0 N N N N N N -12.094 32.483 -4.489 0.000 -1.141 0.891 H232 HP6 16
HP6 H241 1H24 H 0 0 N N N N N N -9.988 30.813 -4.866 -1.249 1.001 0.889 H241 HP6 17
HP6 H242 2H24 H 0 0 N N N N N N -10.786 29.710 -3.864 -1.249 1.000 -0.891 H242 HP6 18
HP6 H251 1H25 H 0 0 N N N N N N -10.976 31.522 -1.974 -2.498 -1.142 -0.889 H251 HP6 19
HP6 H252 2H25 H 0 0 N N N N N N -10.244 32.671 -2.978 -2.498 -1.141 0.891 H252 HP6 20
HP6 H261 1H26 H 0 0 N N N N N N -8.128 31.109 -3.222 -4.638 -0.258 0.000 H261 HP6 21
HP6 H262 2H26 H 0 0 N N N N N N -8.498 31.616 -1.486 -3.748 1.001 0.889 H262 HP6 22
HP6 H263 3H26 H 0 0 N N N N N N -8.860 29.960 -2.218 -3.748 1.000 -0.891 H263 HP6 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HP6 C20 C21 SING N N 1
HP6 C20 H201 SING N N 2
HP6 C20 H202 SING N N 3
HP6 C20 H203 SING N N 4
HP6 C21 C22 SING N N 5
HP6 C21 H211 SING N N 6
HP6 C21 H212 SING N N 7
HP6 C22 C23 SING N N 8
HP6 C22 H221 SING N N 9
HP6 C22 H222 SING N N 10
HP6 C23 C24 SING N N 11
HP6 C23 H231 SING N N 12
HP6 C23 H232 SING N N 13
HP6 C24 C25 SING N N 14
HP6 C24 H241 SING N N 15
HP6 C24 H242 SING N N 16
HP6 C25 C26 SING N N 17
HP6 C25 H251 SING N N 18
HP6 C25 H252 SING N N 19
HP6 C26 H261 SING N N 20
HP6 C26 H262 SING N N 21
HP6 C26 H263 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HP6 SMILES ACDLabs 10.04 CCCCCCC
HP6 SMILES_CANONICAL CACTVS 3.341 CCCCCCC
HP6 SMILES CACTVS 3.341 CCCCCCC
HP6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCC
HP6 SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCC
HP6 InChI InChI 1.03 InChI=1S/C7H16/c1-3-5-7-6-4-2/h3-7H2,1-2H3
HP6 InChIKey InChI 1.03 IMNFDUFMRHMDMM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HP6 "SYSTEMATIC NAME" ACDLabs 10.04 heptane
HP6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 heptane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HP6 'Create component' 2005-08-16 RCSB
HP6 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HP6 C20 C 10.794 0.375 1
HP6 C21 C 9.495 -0.375 2
HP6 C22 C 8.196 0.375 3
HP6 C23 C 6.897 -0.375 4
HP6 C24 C 5.598 0.375 5
HP6 C25 C 4.299 -0.375 6
HP6 C26 C 3.000 0.375 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HP6 C20 C21 SINGLE NONE 1
HP6 C21 C22 SINGLE NONE 2
HP6 C22 C23 SINGLE NONE 3
HP6 C23 C24 SINGLE NONE 4
HP6 C24 C25 SINGLE NONE 5
HP6 C25 C26 SINGLE NONE 6
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id HP6
_pdbe_chem_comp_rdkit_properties.exactmw 100.125
_pdbe_chem_comp_rdkit_properties.amw 100.205
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 69.408
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.977
_pdbe_chem_comp_rdkit_properties.CrippenMR 34.433
_pdbe_chem_comp_rdkit_properties.chi0v 3.500
_pdbe_chem_comp_rdkit_properties.chi1v 1.500
_pdbe_chem_comp_rdkit_properties.chi2v 0.250
_pdbe_chem_comp_rdkit_properties.chi3v 0.250
_pdbe_chem_comp_rdkit_properties.chi4v 0.094
_pdbe_chem_comp_rdkit_properties.chi0n 19.500
_pdbe_chem_comp_rdkit_properties.chi1n 9.500
_pdbe_chem_comp_rdkit_properties.chi2n 0.250
_pdbe_chem_comp_rdkit_properties.chi3n 0.250
_pdbe_chem_comp_rdkit_properties.chi4n 0.094
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0
_pdbe_chem_comp_rdkit_properties.kappa1 0.521
_pdbe_chem_comp_rdkit_properties.kappa2 6
_pdbe_chem_comp_rdkit_properties.kappa3 6
_pdbe_chem_comp_rdkit_properties.Phi 0.446
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HP6 UniChem ChEBI 43098
HP6 UniChem ZINC ZINC000001691363
HP6 UniChem eMolecules 477301
HP6 UniChem fdasrs 456148SDMJ
HP6 UniChem HMDB HMDB0031447
HP6 UniChem NMRShiftDB 10006101
HP6 UniChem ACTor 68920-06-9
HP6 UniChem ACTor 69430-33-7
HP6 UniChem 'EPA CompTox Dashboard' DTXSID6024127
HP6 UniChem LipidMaps LMFA11000575
HP6 UniChem MetaboLights MTBLC43098
HP6 UniChem BRENDA 10666
HP6 UniChem BRENDA 17952
HP6 UniChem ChemicalBook CB0426554
HP6 UniChem Nikkaji J3.192.067A
HP6 UniChem SureChEMBL SCHEMBL699
HP6 UniChem 'PubChem TPHARMA' 14842830
HP6 UniChem PubChem 8900
HP6 UniChem Mcule MCULE-5817084747
HP6 UniChem ACTor 142-82-5
HP6 UniChem Nikkaji J2.027C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HP6 C20 3.139 0.165 -0.196 ETKDGv3 1
HP6 C21 2.383 -0.423 0.996 ETKDGv3 2
HP6 C22 1.046 -1.064 0.594 ETKDGv3 3
HP6 C23 -0.004 -0.025 0.173 ETKDGv3 4
HP6 C24 -1.362 -0.694 -0.089 ETKDGv3 5
HP6 C25 -2.408 0.287 -0.642 ETKDGv3 6
HP6 C26 -2.874 1.303 0.400 ETKDGv3 7
HP6 H201 4.143 0.503 0.135 ETKDGv3 8
HP6 H202 3.268 -0.601 -0.990 ETKDGv3 9
HP6 H203 2.599 1.041 -0.610 ETKDGv3 10
HP6 H211 2.215 0.369 1.758 ETKDGv3 11
HP6 H212 3.021 -1.206 1.460 ETKDGv3 12
HP6 H221 1.211 -1.792 -0.230 ETKDGv3 13
HP6 H222 0.660 -1.629 1.471 ETKDGv3 14
HP6 H231 0.330 0.488 -0.753 ETKDGv3 15
HP6 H232 -0.111 0.730 0.981 ETKDGv3 16
HP6 H241 -1.742 -1.160 0.847 ETKDGv3 17
HP6 H242 -1.224 -1.505 -0.837 ETKDGv3 18
HP6 H251 -2.001 0.822 -1.527 ETKDGv3 19
HP6 H252 -3.292 -0.296 -0.979 ETKDGv3 20
HP6 H261 -2.052 1.998 0.668 ETKDGv3 21
HP6 H262 -3.710 1.903 -0.018 ETKDGv3 22
HP6 H263 -3.235 0.786 1.315 ETKDGv3 23
#