data_HKI
#
_chem_comp.id HKI
_chem_comp.name
'N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C30 H31 Cl N6 O3'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 'Neratinib (HKI-272), bound form'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-14
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 559.059
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HKI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3W2Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HKI CAJ CAJ C 0 1 N N N N N N 1.654 24.013 52.956 -1.716 -4.729 -1.783 CAJ HKI 1
HKI CAL CAL C 0 1 Y N N N N N 1.438 32.804 50.984 7.262 -0.657 2.365 CAL HKI 2
HKI CAK CAK C 0 1 Y N N N N N 0.712 33.151 49.868 8.439 -0.389 1.684 CAK HKI 3
HKI CAO CAO C 0 1 Y N N N N N -0.692 25.377 50.586 1.206 -1.496 -2.213 CAO HKI 4
HKI CAP CAP C 0 1 Y N N N N N -0.322 26.674 50.279 2.443 -1.303 -1.630 CAP HKI 5
HKI CAN CAN C 0 1 Y N N N N N 1.518 31.470 51.317 6.098 -0.831 1.630 CAN HKI 6
HKI CAS CAS C 0 1 Y N N N N N -0.243 20.239 50.608 -2.813 -0.080 -0.644 CAS HKI 7
HKI CAT CAT C 0 1 Y N N N N N 1.486 18.601 51.967 -4.954 -1.036 0.889 CAT HKI 8
HKI CAR CAR C 0 1 Y N N N N N 1.586 24.734 50.460 0.236 -1.843 -0.040 CAR HKI 9
HKI CAM CAM C 0 1 Y N N N N N 0.101 32.158 49.137 8.414 -0.303 0.304 CAM HKI 10
HKI CAQ CAQ C 0 1 Y N N N N N 2.414 21.749 53.291 -3.610 -4.142 -0.326 CAQ HKI 11
HKI CBL CBL C 0 1 Y N N N N N 1.591 22.631 52.634 -2.519 -3.748 -1.116 CBL HKI 12
HKI CBR CBR C 0 1 Y N N N N N 0.661 20.790 51.497 -3.049 -1.460 -0.563 CBR HKI 13
HKI CBQ CBQ C 0 1 Y N N N N N 1.536 19.963 52.199 -4.130 -1.948 0.211 CBQ HKI 14
HKI CBI CBI C 0 1 Y N N N N N 0.256 24.378 50.677 0.098 -1.763 -1.419 CBI HKI 15
HKI CBM CBM C 0 1 Y N N N N N -0.289 18.874 50.388 -3.625 0.789 0.029 CBM HKI 16
HKI CBP CBP C 0 1 Y N N N N N 0.679 22.164 51.710 -2.221 -2.382 -1.244 CBP HKI 17
HKI CBN CBN C 0 1 Y N N N N N 1.009 26.999 50.081 2.580 -1.377 -0.252 CBN HKI 18
HKI CBO CBO C 0 1 Y N N N N N 0.589 18.055 51.071 -4.695 0.313 0.803 CBO HKI 19
HKI CBJ CBJ C 0 1 Y N N N N N 1.985 26.032 50.174 1.473 -1.645 0.543 CBJ HKI 20
HKI CBK CBK C 0 1 Y N N N N N 0.874 30.542 50.526 6.150 -0.725 0.253 CBK HKI 21
HKI CBH CBH C 0 1 N N N N N N -2.591 18.634 49.703 -2.148 2.622 -0.323 CBH HKI 22
HKI CAA CAA C 0 1 N N N N N N 1.402 14.519 51.149 -7.342 1.782 2.901 CAA HKI 23
HKI CAB CAB C 0 1 N N N N N N -7.831 18.607 48.749 1.478 7.484 -1.594 CAB HKI 24
HKI CAC CAC C 0 1 N N N N N N -7.717 17.604 46.668 2.085 5.704 -0.069 CAC HKI 25
HKI CAV CAV C 0 1 N N N N N N 0.962 29.094 50.896 4.892 -0.911 -0.556 CAV HKI 26
HKI CAX CAX C 0 1 N N N N N N -3.554 17.670 49.067 -1.904 4.102 -0.470 CAX HKI 27
HKI CBT CBT C 0 1 N N N N N N -5.011 18.123 49.196 -0.424 4.347 -0.772 CBT HKI 28
HKI CAY CAY C 0 1 N N N N N N -5.726 17.713 47.913 -0.177 5.850 -0.922 CAY HKI 29
HKI CAU CAU C 0 1 N N N N N N 1.690 16.001 51.281 -6.563 0.647 2.234 CAU HKI 30
HKI NAD NAD N 0 1 N N N N N N 1.622 25.129 53.300 -1.080 -5.507 -2.312 NAD HKI 31
HKI NBA NBA N 0 1 Y N N N N N 2.416 20.432 53.093 -4.360 -3.267 0.294 NBA HKI 32
HKI NAZ NAZ N 0 1 Y N N N N N 0.164 30.856 49.437 7.289 -0.474 -0.362 NAZ HKI 33
HKI NBC NBC N 0 1 N N N N N N -0.176 23.061 51.022 -1.156 -1.953 -2.010 NBC HKI 34
HKI NBB NBB N 0 1 N N N N N N -1.237 18.341 49.477 -3.388 2.167 -0.053 NBB HKI 35
HKI NBU NBU N 0 1 N N N N N N -6.959 18.439 47.595 1.244 6.085 -1.212 NBU HKI 36
HKI OAG OAG O 0 1 N N N N N N -3.018 19.579 50.358 -1.229 1.840 -0.447 OAG HKI 37
HKI OBE OBE O 0 1 N N N N N N 1.397 28.299 49.780 3.797 -1.183 0.322 OBE HKI 38
HKI OBD OBD O 0 1 N N N N N N 0.523 16.689 50.833 -5.491 1.193 1.464 OBD HKI 39
HKI CLA CLA CL 0 0 N N N N N N 3.657 26.498 49.921 1.645 -1.737 2.268 CLA HKI 40
HKI H1 H1 H 0 1 N N N N N N 1.931 33.556 51.582 7.252 -0.734 3.442 H1 HKI 41
HKI H2 H2 H 0 1 N N N N N N 0.623 34.185 49.571 9.363 -0.248 2.224 H2 HKI 42
HKI H3 H3 H 0 1 N N N N N N -1.733 25.144 50.756 1.100 -1.434 -3.286 H3 HKI 43
HKI H4 H4 H 0 1 N N N N N N -1.078 27.440 50.193 3.304 -1.094 -2.247 H4 HKI 44
HKI H5 H5 H 0 1 N N N N N N 2.077 31.155 52.186 5.164 -1.045 2.127 H5 HKI 45
HKI H6 H6 H 0 1 N N N N N N -0.925 20.885 50.076 -1.989 0.295 -1.233 H6 HKI 46
HKI H7 H7 H 0 1 N N N N N N 2.164 17.950 52.499 -5.782 -1.392 1.483 H7 HKI 47
HKI H8 H8 H 0 1 N N N N N N 2.341 23.964 50.517 -0.625 -2.050 0.578 H8 HKI 48
HKI H9 H9 H 0 1 N N N N N N -0.466 32.449 48.265 9.328 -0.098 -0.234 H9 HKI 49
HKI H10 H10 H 0 1 N N N N N N 3.106 22.150 54.017 -3.838 -5.194 -0.229 H10 HKI 50
HKI H11 H11 H 0 1 N N N N N N 2.277 13.944 51.484 -8.160 1.365 3.489 H11 HKI 51
HKI H12 H12 H 0 1 N N N N N N 0.532 14.258 51.770 -6.676 2.345 3.555 H12 HKI 52
HKI H13 H13 H 0 1 N N N N N N 1.187 14.280 50.097 -7.746 2.444 2.135 H13 HKI 53
HKI H14 H14 H 0 1 N N N N N N -7.328 19.231 49.502 2.538 7.631 -1.804 H14 HKI 54
HKI H15 H15 H 0 1 N N N N N N -8.766 19.094 48.434 0.896 7.719 -2.486 H15 HKI 55
HKI H16 H16 H 0 1 N N N N N N -8.059 17.622 49.183 1.175 8.140 -0.779 H16 HKI 56
HKI H17 H17 H 0 1 N N N N N N -8.656 18.111 46.400 1.943 4.646 0.150 H17 HKI 57
HKI H18 H18 H 0 1 N N N N N N -7.121 17.431 45.759 3.132 5.889 -0.310 H18 HKI 58
HKI H19 H19 H 0 1 N N N N N N -7.945 16.640 47.146 1.803 6.296 0.803 H19 HKI 59
HKI H20 H20 H 0 1 N N N N N N -0.030 28.745 51.220 4.687 -0.003 -1.122 H20 HKI 60
HKI H21 H21 H 0 1 N N N N N N 1.680 28.977 51.721 5.022 -1.747 -1.243 H21 HKI 61
HKI H22 H22 H 0 1 N N N N N N -3.445 16.690 49.554 -2.511 4.490 -1.288 H22 HKI 62
HKI H23 H23 H 0 1 N N N N N N -3.307 17.578 47.999 -2.175 4.609 0.456 H23 HKI 63
HKI H24 H24 H 0 1 N N N N N N -5.057 19.215 49.320 0.183 3.958 0.045 H24 HKI 64
HKI H25 H25 H 0 1 N N N N N N -5.482 17.635 50.062 -0.154 3.840 -1.699 H25 HKI 65
HKI H26 H26 H 0 1 N N N N N N -5.978 16.645 47.996 -0.784 6.238 -1.739 H26 HKI 66
HKI H27 H27 H 0 1 N N N N N N -5.026 17.860 47.078 -0.447 6.356 0.005 H27 HKI 67
HKI H28 H28 H 0 1 N N N N N N 2.554 16.276 50.658 -6.160 -0.016 3.000 H28 HKI 68
HKI H29 H29 H 0 1 N N N N N N 1.899 16.254 52.331 -7.229 0.083 1.581 H29 HKI 69
HKI H30 H30 H 0 1 N N N N N N -1.099 22.766 50.774 -1.277 -1.783 -2.957 H30 HKI 70
HKI H31 H31 H 0 1 N N N N N N -0.951 17.777 48.702 -4.115 2.794 0.084 H31 HKI 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HKI CAC NBU SING N N 1
HKI NBU CAY SING N N 2
HKI NBU CAB SING N N 3
HKI CAY CBT SING N N 4
HKI CAX CBT SING N N 5
HKI CAX CBH SING N N 6
HKI CAM NAZ DOUB Y N 7
HKI CAM CAK SING Y N 8
HKI NAZ CBK SING Y N 9
HKI NBB CBH SING N N 10
HKI NBB CBM SING N N 11
HKI CBH OAG DOUB N N 12
HKI OBE CBN SING N N 13
HKI OBE CAV SING N N 14
HKI CAK CAL DOUB Y N 15
HKI CLA CBJ SING N N 16
HKI CBN CBJ DOUB Y N 17
HKI CBN CAP SING Y N 18
HKI CBJ CAR SING Y N 19
HKI CAP CAO DOUB Y N 20
HKI CBM CAS DOUB Y N 21
HKI CBM CBO SING Y N 22
HKI CAR CBI DOUB Y N 23
HKI CBK CAV SING N N 24
HKI CBK CAN DOUB Y N 25
HKI CAO CBI SING Y N 26
HKI CAS CBR SING Y N 27
HKI CBI NBC SING N N 28
HKI OBD CBO SING N N 29
HKI OBD CAU SING N N 30
HKI CAL CAN SING Y N 31
HKI NBC CBP SING N N 32
HKI CBO CAT DOUB Y N 33
HKI CAA CAU SING N N 34
HKI CBR CBP DOUB Y N 35
HKI CBR CBQ SING Y N 36
HKI CBP CBL SING Y N 37
HKI CAT CBQ SING Y N 38
HKI CBQ NBA DOUB Y N 39
HKI CBL CAJ SING N N 40
HKI CBL CAQ DOUB Y N 41
HKI CAJ NAD TRIP N N 42
HKI NBA CAQ SING Y N 43
HKI CAL H1 SING N N 44
HKI CAK H2 SING N N 45
HKI CAO H3 SING N N 46
HKI CAP H4 SING N N 47
HKI CAN H5 SING N N 48
HKI CAS H6 SING N N 49
HKI CAT H7 SING N N 50
HKI CAR H8 SING N N 51
HKI CAM H9 SING N N 52
HKI CAQ H10 SING N N 53
HKI CAA H11 SING N N 54
HKI CAA H12 SING N N 55
HKI CAA H13 SING N N 56
HKI CAB H14 SING N N 57
HKI CAB H15 SING N N 58
HKI CAB H16 SING N N 59
HKI CAC H17 SING N N 60
HKI CAC H18 SING N N 61
HKI CAC H19 SING N N 62
HKI CAV H20 SING N N 63
HKI CAV H21 SING N N 64
HKI CAX H22 SING N N 65
HKI CAX H23 SING N N 66
HKI CBT H24 SING N N 67
HKI CBT H25 SING N N 68
HKI CAY H26 SING N N 69
HKI CAY H27 SING N N 70
HKI CAU H28 SING N N 71
HKI CAU H29 SING N N 72
HKI NBC H30 SING N N 73
HKI NBB H31 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HKI SMILES ACDLabs 12.01 'O=C(Nc4cc1c(ncc(C#N)c1Nc3ccc(OCc2ncccc2)c(Cl)c3)cc4OCC)CCCN(C)C'
HKI InChI InChI 1.03 'InChI=1S/C30H31ClN6O3/c1-4-39-28-16-25-23(15-26(28)36-29(38)9-7-13-37(2)3)30(20(17-32)18-34-25)35-21-10-11-27(24(31)14-21)40-19-22-8-5-6-12-33-22/h5-6,8,10-12,14-16,18H,4,7,9,13,19H2,1-3H3,(H,34,35)(H,36,38)'
HKI InChIKey InChI 1.03 MIURWHKJMYMLCP-UHFFFAOYSA-N
HKI SMILES_CANONICAL CACTVS 3.370 'CCOc1cc2ncc(C#N)c(Nc3ccc(OCc4ccccn4)c(Cl)c3)c2cc1NC(=O)CCCN(C)C'
HKI SMILES CACTVS 3.370 'CCOc1cc2ncc(C#N)c(Nc3ccc(OCc4ccccn4)c(Cl)c3)c2cc1NC(=O)CCCN(C)C'
HKI SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'CCOc1cc2c(cc1NC(=O)CCCN(C)C)c(c(cn2)C#N)Nc3ccc(c(c3)Cl)OCc4ccccn4'
HKI SMILES 'OpenEye OEToolkits' 1.7.6 'CCOc1cc2c(cc1NC(=O)CCCN(C)C)c(c(cn2)C#N)Nc3ccc(c(c3)Cl)OCc4ccccn4'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HKI 'SYSTEMATIC NAME' ACDLabs 12.01 'N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide'
HKI 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 'N-[4-[[3-chloranyl-4-(pyridin-2-ylmethoxy)phenyl]amino]-3-cyano-7-ethoxy-quinolin-6-yl]-4-(dimethylamino)butanamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HKI 'Create component' 2012-12-14 PDBJ
HKI 'Initial release' 2013-01-11 RCSB
HKI 'Modify synonyms' 2021-03-13 RCSB
HKI 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HKI
_pdbx_chem_comp_synonyms.name 'Neratinib (HKI-272), bound form'
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id HKI
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom CBT
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id HKI
_pdbe_chem_comp_synonyms.name 'Neratinib (HKI-272), bound form'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HKI CAJ C 18.687 -1.909 1
HKI CAL C 23.722 7.196 2
HKI CAK C 25.029 6.461 3
HKI CAO C 17.288 1.871 4
HKI CAP C 18.578 2.636 5
HKI CAN C 22.432 6.431 6
HKI CAS C 13.392 -1.946 7
HKI CAT C 13.392 -4.946 8
HKI CAR C 18.613 -0.364 9
HKI CAM C 25.047 4.961 10
HKI CAQ C 17.391 -4.227 11
HKI CBL C 17.391 -2.665 12
HKI CBR C 14.691 -2.696 13
HKI CBQ C 14.691 -4.196 14
HKI CBI C 17.305 0.371 15
HKI CBM C 12.093 -2.696 16
HKI CBP C 16.032 -1.894 17
HKI CBN C 19.886 1.901 18
HKI CBO C 12.093 -4.196 19
HKI CBJ C 19.903 0.401 20
HKI CBK C 22.449 4.931 21
HKI CBH C 9.495 -2.696 22
HKI CAA C 9.495 -7.196 23
HKI CAB C 4.299 -4.196 24
HKI CAC C 3.000 -1.946 25
HKI CAV C 21.159 4.166 26
HKI CAX C 8.196 -1.946 27
HKI CBT C 6.897 -2.696 28
HKI CAY C 5.598 -1.946 29
HKI CAU C 10.794 -6.446 30
HKI NAD N 19.984 -1.155 31
HKI NBA N 16.032 -4.998 32
HKI NAZ N 23.757 4.196 33
HKI NBC N 16.015 -0.394 34
HKI NBB N 10.794 -1.946 35
HKI NBU N 4.299 -2.696 36
HKI OAG O 9.495 -4.196 37
HKI OBE O 21.176 2.666 38
HKI OBD O 10.794 -4.946 39
HKI CLA Cl 21.211 -0.334 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HKI CAC NBU SINGLE NONE 1
HKI NBU CAY SINGLE NONE 2
HKI NBU CAB SINGLE NONE 3
HKI CAY CBT SINGLE NONE 4
HKI CAX CBT SINGLE NONE 5
HKI CAX CBH SINGLE NONE 6
HKI CAM NAZ DOUBLE NONE 7
HKI CAM CAK SINGLE NONE 8
HKI NAZ CBK SINGLE NONE 9
HKI NBB CBH SINGLE NONE 10
HKI NBB CBM SINGLE NONE 11
HKI CBH OAG DOUBLE NONE 12
HKI OBE CBN SINGLE NONE 13
HKI OBE CAV SINGLE NONE 14
HKI CAK CAL DOUBLE NONE 15
HKI CLA CBJ SINGLE NONE 16
HKI CBN CBJ DOUBLE NONE 17
HKI CBN CAP SINGLE NONE 18
HKI CBJ CAR SINGLE NONE 19
HKI CAP CAO DOUBLE NONE 20
HKI CBM CAS DOUBLE NONE 21
HKI CBM CBO SINGLE NONE 22
HKI CAR CBI DOUBLE NONE 23
HKI CBK CAV SINGLE NONE 24
HKI CBK CAN DOUBLE NONE 25
HKI CAO CBI SINGLE NONE 26
HKI CAS CBR SINGLE NONE 27
HKI CBI NBC SINGLE NONE 28
HKI OBD CBO SINGLE NONE 29
HKI OBD CAU SINGLE NONE 30
HKI CAL CAN SINGLE NONE 31
HKI NBC CBP SINGLE NONE 32
HKI CBO CAT DOUBLE NONE 33
HKI CAA CAU SINGLE NONE 34
HKI CBR CBP DOUBLE NONE 35
HKI CBR CBQ SINGLE NONE 36
HKI CBP CBL SINGLE NONE 37
HKI CAT CBQ SINGLE NONE 38
HKI CBQ NBA DOUBLE NONE 39
HKI CBL CAJ SINGLE NONE 40
HKI CBL CAQ DOUBLE NONE 41
HKI CAJ NAD TRIPLE NONE 42
HKI NBA CAQ SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HKI MurckoScaffold S1 scaffold c1ccc(COc2ccc(Nc3ccnc4ccccc34)cc2)nc1 InChI=1S/C21H17N3O/c1-2-7-20-19(6-1)21(12-14-23-20)24-16-8-10-18(11-9-16)25-15-17-5-3-4-13-22-17/h1-14H,15H2,(H,23,24) RJDMTYDMZPFDFC-UHFFFAOYSA-N
HKI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HKI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HKI pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
HKI quinoline F4 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
HKI Z57040482 F5 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HKI CAL S1 1
HKI CAK S1 1
HKI CAO S1 1
HKI CAP S1 1
HKI CAN S1 1
HKI CAS S1 1
HKI CAT S1 1
HKI CAR S1 1
HKI CAM S1 1
HKI CAQ S1 1
HKI CBL S1 1
HKI CBR S1 1
HKI CBQ S1 1
HKI CBI S1 1
HKI CBM S1 1
HKI CBP S1 1
HKI CBN S1 1
HKI CBO S1 1
HKI CBJ S1 1
HKI CBK S1 1
HKI CAV S1 1
HKI NBA S1 1
HKI NAZ S1 1
HKI NBC S1 1
HKI OBE S1 1
HKI NBB F1 1
HKI CBH F1 1
HKI OAG F1 1
HKI CAX F1 1
HKI CAO F2 1
HKI CAP F2 1
HKI CBN F2 1
HKI CBJ F2 1
HKI CAR F2 1
HKI CBI F2 1
HKI CAS F2 2
HKI CBM F2 2
HKI CBO F2 2
HKI CAT F2 2
HKI CBQ F2 2
HKI CBR F2 2
HKI CAM F3 1
HKI CAK F3 1
HKI CAL F3 1
HKI CAN F3 1
HKI CBK F3 1
HKI NAZ F3 1
HKI CAQ F3 2
HKI CBL F3 2
HKI CBP F3 2
HKI CBR F3 2
HKI CBQ F3 2
HKI NBA F3 2
HKI CBM F4 1
HKI CAS F4 1
HKI CBR F4 1
HKI CBQ F4 1
HKI CAT F4 1
HKI CBO F4 1
HKI NBA F4 1
HKI CAQ F4 1
HKI CBL F4 1
HKI CBP F4 1
HKI CAX F5 1
HKI CBH F5 1
HKI OAG F5 1
HKI NBB F5 1
HKI CBM F5 1
HKI CAS F5 1
HKI CBR F5 1
HKI CBQ F5 1
HKI CAT F5 1
HKI CBO F5 1
HKI OBD F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HKI
_pdbe_chem_comp_rdkit_properties.exactmw 558.215
_pdbe_chem_comp_rdkit_properties.amw 559.070
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.267
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 281.930
_pdbe_chem_comp_rdkit_properties.tpsa 112.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.552
_pdbe_chem_comp_rdkit_properties.CrippenMR 150.918
_pdbe_chem_comp_rdkit_properties.chi0v 20.042
_pdbe_chem_comp_rdkit_properties.chi1v 10.521
_pdbe_chem_comp_rdkit_properties.chi2v 4.424
_pdbe_chem_comp_rdkit_properties.chi3v 4.424
_pdbe_chem_comp_rdkit_properties.chi4v 2.823
_pdbe_chem_comp_rdkit_properties.chi0n 50.286
_pdbe_chem_comp_rdkit_properties.chi1n 25.537
_pdbe_chem_comp_rdkit_properties.chi2n 4.158
_pdbe_chem_comp_rdkit_properties.chi3n 4.158
_pdbe_chem_comp_rdkit_properties.chi4n 2.647
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.390
_pdbe_chem_comp_rdkit_properties.kappa1 8.803
_pdbe_chem_comp_rdkit_properties.kappa2 13.603
_pdbe_chem_comp_rdkit_properties.kappa3 7.376
_pdbe_chem_comp_rdkit_properties.Phi 2.994
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HKI UniChem ChEMBL CHEMBL460250
HKI UniChem ZINC ZINC000044361739
HKI UniChem SureChEMBL SCHEMBL22419655
HKI UniChem BindingDb 461301
HKI UniChem PubChem 44560357
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HKI CAJ 2.758 -4.042 -0.998 ETKDGv3 1
HKI CAL 9.749 3.702 0.449 ETKDGv3 2
HKI CAK 10.874 3.031 0.180 ETKDGv3 3
HKI CAO 3.337 -0.114 -2.334 ETKDGv3 4
HKI CAP 4.525 0.471 -2.146 ETKDGv3 5
HKI CAN 8.473 3.267 -0.153 ETKDGv3 6
HKI CAS -1.162 -0.977 -0.201 ETKDGv3 7
HKI CAT -2.282 -3.029 1.473 ETKDGv3 8
HKI CAR 3.283 -0.910 -0.030 ETKDGv3 9
HKI CAM 10.818 1.861 -0.717 ETKDGv3 10
HKI CAQ 0.929 -4.656 0.440 ETKDGv3 11
HKI CBL 1.501 -3.742 -0.358 ETKDGv3 12
HKI CBR -0.398 -2.232 -0.030 ETKDGv3 13
HKI CBQ -0.980 -3.275 0.839 ETKDGv3 14
HKI CBI 2.679 -0.853 -1.233 ETKDGv3 15
HKI CBM -2.366 -0.814 0.381 ETKDGv3 16
HKI CBP 0.807 -2.445 -0.600 ETKDGv3 17
HKI CBN 5.201 0.392 -0.823 ETKDGv3 18
HKI CBO -2.944 -1.872 1.262 ETKDGv3 19
HKI CBJ 4.599 -0.269 0.180 ETKDGv3 20
HKI CBK 8.460 2.206 -0.977 ETKDGv3 21
HKI CBH -3.179 1.140 -1.025 ETKDGv3 22
HKI CAA -5.660 -3.533 1.678 ETKDGv3 23
HKI CAB -7.171 2.998 0.604 ETKDGv3 24
HKI CAC -6.991 0.658 1.116 ETKDGv3 25
HKI CAV 7.179 1.717 -1.577 ETKDGv3 26
HKI CAX -3.869 2.472 -1.073 ETKDGv3 27
HKI CBT -5.242 2.385 -1.758 ETKDGv3 28
HKI CAY -6.236 1.456 -1.035 ETKDGv3 29
HKI CAU -4.987 -2.527 2.605 ETKDGv3 30
HKI NAD 3.766 -4.281 -1.513 ETKDGv3 31
HKI NBA -0.345 -4.391 1.047 ETKDGv3 32
HKI NAZ 9.684 1.494 -1.242 ETKDGv3 33
HKI NBC 1.395 -1.458 -1.465 ETKDGv3 34
HKI NBB -3.093 0.417 0.215 ETKDGv3 35
HKI NBU -6.364 1.782 0.402 ETKDGv3 36
HKI OAG -2.727 0.642 -2.092 ETKDGv3 37
HKI OBE 6.449 0.989 -0.595 ETKDGv3 38
HKI OBD -4.190 -1.606 1.859 ETKDGv3 39
HKI CLA 5.355 -0.387 1.762 ETKDGv3 40
HKI H1 9.771 4.560 1.108 ETKDGv3 41
HKI H2 11.815 3.339 0.617 ETKDGv3 42
HKI H3 2.856 -0.050 -3.302 ETKDGv3 43
HKI H4 4.983 1.000 -2.971 ETKDGv3 44
HKI H5 7.562 3.805 0.078 ETKDGv3 45
HKI H6 -0.732 -0.167 -0.775 ETKDGv3 46
HKI H7 -2.686 -3.800 2.114 ETKDGv3 47
HKI H8 2.814 -1.417 0.803 ETKDGv3 48
HKI H9 11.719 1.305 -0.938 ETKDGv3 49
HKI H10 1.413 -5.607 0.626 ETKDGv3 50
HKI H11 -6.280 -2.998 0.928 ETKDGv3 51
HKI H12 -4.904 -4.147 1.149 ETKDGv3 52
HKI H13 -6.315 -4.206 2.271 ETKDGv3 53
HKI H14 -8.179 2.900 0.143 ETKDGv3 54
HKI H15 -6.655 3.881 0.174 ETKDGv3 55
HKI H16 -7.292 3.204 1.690 ETKDGv3 56
HKI H17 -7.051 0.877 2.204 ETKDGv3 57
HKI H18 -6.376 -0.259 1.005 ETKDGv3 58
HKI H19 -8.014 0.454 0.727 ETKDGv3 59
HKI H20 7.404 1.057 -2.442 ETKDGv3 60
HKI H21 6.576 2.581 -1.934 ETKDGv3 61
HKI H22 -3.231 3.181 -1.644 ETKDGv3 62
HKI H23 -3.979 2.889 -0.049 ETKDGv3 63
HKI H24 -5.107 2.020 -2.800 ETKDGv3 64
HKI H25 -5.671 3.405 -1.837 ETKDGv3 65
HKI H26 -7.224 1.507 -1.545 ETKDGv3 66
HKI H27 -5.866 0.413 -1.163 ETKDGv3 67
HKI H28 -4.383 -3.040 3.383 ETKDGv3 68
HKI H29 -5.779 -1.953 3.130 ETKDGv3 69
HKI H30 0.848 -1.156 -2.302 ETKDGv3 70
HKI H31 -3.675 0.753 1.015 ETKDGv3 71
#