data_HG6
#
_chem_comp.id HG6
_chem_comp.name "4-chloranyl-9,10-bis(oxidanylidene)anthracene-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H7 Cl O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-08
_chem_comp.pdbx_modified_date 2021-10-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 286.667
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HG6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DT3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HG6 CAA C1 C 0 1 Y N N N N N -20.865 1.366 -7.811 2.309 -1.079 -0.034 CAA HG6 1
HG6 CAB C2 C 0 1 Y N N N N N -21.601 0.324 -8.358 2.455 0.321 -0.009 CAB HG6 2
HG6 CAC C3 C 0 1 Y N N N N N -20.454 2.424 -8.605 3.422 -1.891 0.154 CAC HG6 3
HG6 CAD C4 C 0 1 Y N N N N N -21.930 0.347 -9.709 3.712 0.880 0.199 CAD HG6 4
HG6 CAE C5 C 0 1 Y N N N N N -20.785 2.447 -9.953 4.666 -1.319 0.361 CAE HG6 5
HG6 CAF C6 C 0 1 Y N N N N N -21.521 1.408 -10.508 4.810 0.056 0.380 CAF HG6 6
HG6 CAG C7 C 0 1 N N N N N N -20.538 1.346 -6.468 0.973 -1.672 -0.255 CAG HG6 7
HG6 CAH C8 C 0 1 Y N N N N N -20.955 0.285 -5.681 -0.227 -0.814 -0.139 CAH HG6 8
HG6 CAI C9 C 0 1 N N N N N N -22.023 -0.741 -7.571 1.270 1.184 -0.203 CAI HG6 9
HG6 CAJ C10 C 0 1 Y N N N N N -21.696 -0.773 -6.207 -0.082 0.587 -0.114 CAJ HG6 10
HG6 CAK C11 C 0 1 Y N N N N N -20.597 0.317 -4.345 -1.492 -1.380 -0.056 CAK HG6 11
HG6 CAL C12 C 0 1 Y N N N N N -20.975 -0.701 -3.495 -2.615 -0.555 0.054 CAL HG6 12
HG6 CAM C13 C 0 1 Y N N N N N -22.083 -1.813 -5.346 -1.207 1.400 -0.004 CAM HG6 13
HG6 CAN C14 C 0 1 Y N N N N N -21.719 -1.766 -3.998 -2.466 0.831 0.079 CAN HG6 14
HG6 CAO C15 C 0 1 N N N N N N -20.587 -0.612 -2.162 -3.964 -1.154 0.143 CAO HG6 15
HG6 OAP O1 O 0 1 N N N N N N -21.378 -0.908 -1.246 -5.048 -0.361 0.248 OAP HG6 16
HG6 OAQ O2 O 0 1 N N N N N N -19.442 -0.202 -1.876 -4.096 -2.362 0.120 OAQ HG6 17
HG6 OAS O3 O 0 1 N N N N N N -19.884 2.262 -5.970 0.861 -2.851 -0.529 OAS HG6 18
HG6 OAT O4 O 0 1 N N N N N N -22.675 -1.636 -8.108 1.404 2.370 -0.432 OAT HG6 19
HG6 CL1 CL1 CL 0 0 N N N N N N -23.025 -3.199 -5.906 -1.030 3.127 0.028 CLAR HG6 20
HG6 H1 H1 H 0 1 N N N N N N -19.877 3.230 -8.176 3.316 -2.966 0.141 H1 HG6 21
HG6 H2 H2 H 0 1 N N N N N N -22.504 -0.461 -10.138 3.830 1.953 0.219 H2 HG6 22
HG6 H3 H3 H 0 1 N N N N N N -20.470 3.274 -10.571 5.529 -1.950 0.508 H3 HG6 23
HG6 H4 H4 H 0 1 N N N N N N -21.775 1.425 -11.558 5.785 0.491 0.542 H4 HG6 24
HG6 H5 H5 H 0 1 N N N N N N -20.017 1.145 -3.965 -1.608 -2.453 -0.075 H5 HG6 25
HG6 H6 H6 H 0 1 N N N N N N -22.018 -2.566 -3.337 -3.337 1.464 0.163 H6 HG6 26
HG6 H7 H7 H 0 1 N N N N N N -20.958 -0.766 -0.406 -5.909 -0.798 0.303 H7 HG6 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HG6 CAF CAE DOUB Y N 1
HG6 CAF CAD SING Y N 2
HG6 CAE CAC SING Y N 3
HG6 CAD CAB DOUB Y N 4
HG6 CAC CAA DOUB Y N 5
HG6 CAB CAA SING Y N 6
HG6 CAB CAI SING N N 7
HG6 OAT CAI DOUB N N 8
HG6 CAA CAG SING N N 9
HG6 CAI CAJ SING N N 10
HG6 CAG OAS DOUB N N 11
HG6 CAG CAH SING N N 12
HG6 CAJ CAH DOUB Y N 13
HG6 CAJ CAM SING Y N 14
HG6 CL1 CAM SING N N 15
HG6 CAH CAK SING Y N 16
HG6 CAM CAN DOUB Y N 17
HG6 CAK CAL DOUB Y N 18
HG6 CAN CAL SING Y N 19
HG6 CAL CAO SING N N 20
HG6 CAO OAQ DOUB N N 21
HG6 CAO OAP SING N N 22
HG6 CAC H1 SING N N 23
HG6 CAD H2 SING N N 24
HG6 CAE H3 SING N N 25
HG6 CAF H4 SING N N 26
HG6 CAK H5 SING N N 27
HG6 CAN H6 SING N N 28
HG6 OAP H7 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HG6 InChI InChI 1.03 InChI=1S/C15H7ClO4/c16-11-6-7(15(19)20)5-10-12(11)14(18)9-4-2-1-3-8(9)13(10)17/h1-6H,(H,19,20)
HG6 InChIKey InChI 1.03 WRJVLGUSGCVLDE-UHFFFAOYSA-N
HG6 SMILES_CANONICAL CACTVS 3.385 OC(=O)c1cc(Cl)c2C(=O)c3ccccc3C(=O)c2c1
HG6 SMILES CACTVS 3.385 OC(=O)c1cc(Cl)c2C(=O)c3ccccc3C(=O)c2c1
HG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)C(=O)c3cc(cc(c3C2=O)Cl)C(=O)O
HG6 SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)C(=O)c3cc(cc(c3C2=O)Cl)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id HG6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-chloranyl-9,10-bis(oxidanylidene)anthracene-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HG6 'Create component' 2021-01-08 PDBJ
HG6 'Initial release' 2021-10-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HG6 CAA C 5.700 -0.758 1
HG6 CAB C 5.700 0.742 2
HG6 CAC C 4.359 -1.560 3
HG6 CAD C 4.359 1.544 4
HG6 CAE C 3.000 -0.789 5
HG6 CAF C 3.000 0.773 6
HG6 CAG C 6.999 -1.508 7
HG6 CAH C 8.298 -0.758 8
HG6 CAI C 6.999 1.492 9
HG6 CAJ C 8.298 0.742 10
HG6 CAK C 9.639 -1.560 11
HG6 CAL C 10.998 -0.789 12
HG6 CAM C 9.639 1.544 13
HG6 CAN C 10.998 0.773 14
HG6 CAO C 12.294 -1.544 15
HG6 OAP O 12.288 -3.044 16
HG6 OAQ O 13.596 -0.799 17
HG6 OAS O 6.999 -3.008 18
HG6 OAT O 6.999 2.992 19
HG6 CL1 Cl 9.622 3.044 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HG6 CAF CAE SINGLE NONE 1
HG6 CAF CAD DOUBLE NONE 2
HG6 CAE CAC DOUBLE NONE 3
HG6 CAD CAB SINGLE NONE 4
HG6 CAC CAA SINGLE NONE 5
HG6 CAB CAA DOUBLE NONE 6
HG6 CAB CAI SINGLE NONE 7
HG6 OAT CAI DOUBLE NONE 8
HG6 CAA CAG SINGLE NONE 9
HG6 CAI CAJ SINGLE NONE 10
HG6 CAG OAS DOUBLE NONE 11
HG6 CAG CAH SINGLE NONE 12
HG6 CAJ CAH DOUBLE NONE 13
HG6 CAJ CAM SINGLE NONE 14
HG6 CL1 CAM SINGLE NONE 15
HG6 CAH CAK SINGLE NONE 16
HG6 CAM CAN DOUBLE NONE 17
HG6 CAK CAL DOUBLE NONE 18
HG6 CAN CAL SINGLE NONE 19
HG6 CAL CAO SINGLE NONE 20
HG6 CAO OAQ DOUBLE NONE 21
HG6 CAO OAP SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HG6 MurckoScaffold S1 scaffold O=C1c2ccccc2C(=O)c2ccccc21 InChI=1S/C14H8O2/c15-13-9-5-1-2-6-10(9)14(16)12-8-4-3-7-11(12)13/h1-8H RZVHIXYEVGDQDX-UHFFFAOYSA-N
HG6 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HG6 Z104477350 F2 fragment CC(=O)c1cccc(Cl)c1 InChI=1S/C8H7ClO/c1-6(10)7-3-2-4-8(9)5-7/h2-5H,1H3 UUWJBXKHMMQDED-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HG6 CAA S1 1
HG6 CAB S1 1
HG6 CAC S1 1
HG6 CAD S1 1
HG6 CAE S1 1
HG6 CAF S1 1
HG6 CAG S1 1
HG6 CAH S1 1
HG6 CAI S1 1
HG6 CAJ S1 1
HG6 CAK S1 1
HG6 CAL S1 1
HG6 CAM S1 1
HG6 CAN S1 1
HG6 OAS S1 1
HG6 OAT S1 1
HG6 CAA F1 1
HG6 CAC F1 1
HG6 CAE F1 1
HG6 CAF F1 1
HG6 CAD F1 1
HG6 CAB F1 1
HG6 CAH F1 2
HG6 CAJ F1 2
HG6 CAM F1 2
HG6 CAN F1 2
HG6 CAL F1 2
HG6 CAK F1 2
HG6 CAA F2 1
HG6 CAG F2 1
HG6 OAS F2 1
HG6 CAH F2 1
HG6 CAK F2 1
HG6 CAL F2 1
HG6 CAN F2 1
HG6 CAM F2 1
HG6 CL1 F2 1
HG6 CAJ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HG6
_pdbe_chem_comp_rdkit_properties.exactmw 286.003
_pdbe_chem_comp_rdkit_properties.amw 286.670
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.081
_pdbe_chem_comp_rdkit_properties.tpsa 71.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.540
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.388
_pdbe_chem_comp_rdkit_properties.chi0v 10.267
_pdbe_chem_comp_rdkit_properties.chi1v 5.633
_pdbe_chem_comp_rdkit_properties.chi2v 3.038
_pdbe_chem_comp_rdkit_properties.chi3v 3.038
_pdbe_chem_comp_rdkit_properties.chi4v 2.164
_pdbe_chem_comp_rdkit_properties.chi0n 16.511
_pdbe_chem_comp_rdkit_properties.chi1n 8.664
_pdbe_chem_comp_rdkit_properties.chi2n 2.754
_pdbe_chem_comp_rdkit_properties.chi3n 2.754
_pdbe_chem_comp_rdkit_properties.chi4n 1.889
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.460
_pdbe_chem_comp_rdkit_properties.kappa1 6.812
_pdbe_chem_comp_rdkit_properties.kappa2 4.283
_pdbe_chem_comp_rdkit_properties.kappa3 1.656
_pdbe_chem_comp_rdkit_properties.Phi 1.459
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HG6 UniChem SureChEMBL SCHEMBL8827561
HG6 UniChem PubChem 19033907
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HG6 CAA -1.825 0.676 0.435 ETKDGv3 1
HG6 CAB -2.068 -0.570 -0.025 ETKDGv3 2
HG6 CAC -2.962 1.554 0.815 ETKDGv3 3
HG6 CAD -3.472 -1.045 -0.144 ETKDGv3 4
HG6 CAE -4.221 1.115 0.703 ETKDGv3 5
HG6 CAF -4.487 -0.246 0.201 ETKDGv3 6
HG6 CAG -0.433 1.158 0.558 ETKDGv3 7
HG6 CAH 0.697 0.277 0.177 ETKDGv3 8
HG6 CAI -0.942 -1.455 -0.407 ETKDGv3 9
HG6 CAJ 0.466 -0.976 -0.286 ETKDGv3 10
HG6 CAK 2.089 0.778 0.306 ETKDGv3 11
HG6 CAL 3.134 0.007 -0.029 ETKDGv3 12
HG6 CAM 1.638 -1.835 -0.661 ETKDGv3 13
HG6 CAN 2.884 -1.362 -0.535 ETKDGv3 14
HG6 CAO 4.520 0.509 0.101 ETKDGv3 15
HG6 OAP 4.765 1.796 0.576 ETKDGv3 16
HG6 OAQ 5.494 -0.225 -0.218 ETKDGv3 17
HG6 OAS -0.209 2.323 0.987 ETKDGv3 18
HG6 OAT -1.194 -2.614 -0.833 ETKDGv3 19
HG6 CL1 1.459 -3.478 -1.273 ETKDGv3 20
HG6 H1 -2.782 2.555 1.185 ETKDGv3 21
HG6 H2 -3.684 -2.041 -0.511 ETKDGv3 22
HG6 H3 -5.047 1.757 0.980 ETKDGv3 23
HG6 H4 -5.508 -0.595 0.113 ETKDGv3 24
HG6 H5 2.253 1.782 0.678 ETKDGv3 25
HG6 H6 3.723 -1.991 -0.808 ETKDGv3 26
HG6 H7 5.711 2.145 0.667 ETKDGv3 27
#