data_HCI
#
_chem_comp.id HCI
_chem_comp.name 'HYDROCINNAMIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C9 H10 O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms '3PP; 3-PHENYLPROPIONIC ACID'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 150.174
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HCI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AHX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HCI C1 C1 C 0 1 N N N Y N Y 10.468 26.912 23.727 2.847 0.001 -0.114 C1 HCI 1
HCI O1 O1 O 0 1 N N N Y N Y 10.306 26.399 24.821 3.156 0.009 1.054 O1 HCI 2
HCI O2 O2 O 0 1 N Y N Y N Y 11.636 26.944 23.185 3.799 -0.011 -1.060 O2 HCI 3
HCI C2 C2 C 0 1 N N N N N N 9.195 27.513 23.055 1.393 -0.002 -0.509 C2 HCI 4
HCI C3 C3 C 0 1 N N N N N N 9.346 29.028 22.672 0.523 0.006 0.749 C3 HCI 5
HCI "C1'" "C1'" C 0 1 Y N N N N N 9.166 29.979 23.848 -0.932 0.003 0.355 "C1'" HCI 6
HCI "C2'" "C2'" C 0 1 Y N N N N N 7.976 30.674 24.069 -1.598 -1.196 0.182 "C2'" HCI 7
HCI "C3'" "C3'" C 0 1 Y N N N N N 7.854 31.422 25.245 -2.932 -1.199 -0.180 "C3'" HCI 8
HCI "C4'" "C4'" C 0 1 Y N N N N N 8.944 31.729 26.053 -3.600 -0.004 -0.370 "C4'" HCI 9
HCI "C5'" "C5'" C 0 1 Y N N N N N 10.155 31.080 25.826 -2.934 1.195 -0.196 "C5'" HCI 10
HCI "C6'" "C6'" C 0 1 Y N N N N N 10.233 30.237 24.716 -1.601 1.198 0.171 "C6'" HCI 11
HCI HO2 HO2 H 0 1 N Y N Y N Y 12.265 26.527 23.762 4.718 -0.012 -0.758 HO2 HCI 12
HCI H21 H21 H 0 1 N N N N N N 8.982 26.942 22.139 1.176 0.883 -1.106 H21 HCI 13
HCI H22 H22 H 0 1 N N N N N N 8.352 27.413 23.754 1.177 -0.896 -1.094 H22 HCI 14
HCI H31 H31 H 0 1 N N N N N N 10.351 29.181 22.252 0.739 -0.880 1.347 H31 HCI 15
HCI H32 H32 H 0 1 N N N N N N 8.590 29.271 21.911 0.738 0.900 1.334 H32 HCI 16
HCI "H2'" "H2'" H 0 1 N N N N N N 7.170 30.635 23.351 -1.077 -2.130 0.329 "H2'" HCI 17
HCI "H3'" "H3'" H 0 1 N N N N N N 6.876 31.775 25.537 -3.453 -2.136 -0.316 "H3'" HCI 18
HCI "H4'" "H4'" H 0 1 N N N N N N 8.853 32.459 26.844 -4.642 -0.006 -0.653 "H4'" HCI 19
HCI "H5'" "H5'" H 0 1 N N N N N N 11.000 31.223 26.483 -3.455 2.129 -0.344 "H5'" HCI 20
HCI "H6'" "H6'" H 0 1 N N N N N N 11.177 29.753 24.514 -1.081 2.135 0.310 "H6'" HCI 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HCI C1 O1 DOUB N N 1
HCI C1 O2 SING N N 2
HCI C1 C2 SING N N 3
HCI O2 HO2 SING N N 4
HCI C2 C3 SING N N 5
HCI C2 H21 SING N N 6
HCI C2 H22 SING N N 7
HCI C3 "C1'" SING N N 8
HCI C3 H31 SING N N 9
HCI C3 H32 SING N N 10
HCI "C1'" "C2'" DOUB Y N 11
HCI "C1'" "C6'" SING Y N 12
HCI "C2'" "C3'" SING Y N 13
HCI "C2'" "H2'" SING N N 14
HCI "C3'" "C4'" DOUB Y N 15
HCI "C3'" "H3'" SING N N 16
HCI "C4'" "C5'" SING Y N 17
HCI "C4'" "H4'" SING N N 18
HCI "C5'" "C6'" DOUB Y N 19
HCI "C5'" "H5'" SING N N 20
HCI "C6'" "H6'" SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HCI SMILES ACDLabs 12.01 'O=C(O)CCc1ccccc1'
HCI InChI InChI 1.03 'InChI=1S/C9H10O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-5H,6-7H2,(H,10,11)'
HCI InChIKey InChI 1.03 XMIIGOLPHOKFCH-UHFFFAOYSA-N
HCI SMILES_CANONICAL CACTVS 3.370 'OC(=O)CCc1ccccc1'
HCI SMILES CACTVS 3.370 'OC(=O)CCc1ccccc1'
HCI SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'c1ccc(cc1)CCC(=O)O'
HCI SMILES 'OpenEye OEToolkits' 1.7.6 'c1ccc(cc1)CCC(=O)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HCI 'SYSTEMATIC NAME' ACDLabs 12.01 '3-phenylpropanoic acid'
HCI 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '3-phenylpropanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HCI 'Create component' 1999-07-08 EBI
HCI 'Modify descriptor' 2011-06-04 RCSB
HCI 'Modify leaving atom flag' 2012-03-20 RCSB
HCI 'Modify synonyms' 2020-06-05 PDBE
HCI 'Modify backbone' 2023-11-03 PDBE
HCI 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 HCI 3PP ? ?
2 HCI '3-PHENYLPROPIONIC ACID' ? ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id HCI
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position N-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id HCI
_pdbe_chem_comp_drugbank_details.drugbank_id DB02024
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '3-phenylpropionic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 501-52-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
HCI 3PP wwPDB ?
HCI '3-PHENYLPROPIONIC ACID' wwPDB ?
HCI '3-phenyl-propionic acid' DrugBank ?
HCI '3-phenylpropanoic acid' DrugBank ?
HCI '3-phenylpropionic acid' DrugBank ?
HCI 3PP DrugBank ?
HCI 'beta-Phenylpropionic acid' DrugBank ?
HCI 'Hydrocinnamic acid' DrugBank ?
HCI Phenylpropanoate DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HCI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02024
_pdbe_chem_comp_drugbank_classification.parent 'Phenylpropanoic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Phenylpropanoic acids'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylpropanoic acids. These are compounds with a structure containing a benzene ring conjugated to a propanoic acid.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
HCI DB02024 'Aspartate aminotransferase' 'Escherichia coli (strain K12)' P00509 unknown 1
HCI DB02024 'Aromatic-amino-acid aminotransferase' 'Paracoccus denitrificans' P95468 unknown 2
HCI DB02024 Aminotransferase 'Thermus thermophilus' Q75WK2 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HCI C1 C 5.598 2.535 1
HCI O1 O 6.897 3.285 2
HCI O2 O 4.299 3.285 3
HCI C2 C 5.598 1.035 4
HCI C3 C 4.299 0.285 5
HCI "C1'" C 4.299 -1.215 6
HCI "C2'" C 3.000 -1.965 7
HCI "C3'" C 3.000 -3.465 8
HCI "C4'" C 4.299 -4.215 9
HCI "C5'" C 5.598 -3.465 10
HCI "C6'" C 5.598 -1.965 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HCI C1 O1 DOUBLE NONE 1
HCI C1 O2 SINGLE NONE 2
HCI C1 C2 SINGLE NONE 3
HCI C2 C3 SINGLE NONE 4
HCI C3 "C1'" SINGLE NONE 5
HCI "C1'" "C2'" DOUBLE NONE 6
HCI "C1'" "C6'" SINGLE NONE 7
HCI "C2'" "C3'" SINGLE NONE 8
HCI "C3'" "C4'" DOUBLE NONE 9
HCI "C4'" "C5'" SINGLE NONE 10
HCI "C5'" "C6'" DOUBLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HCI MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HCI phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HCI "C1'" S1 1
HCI "C2'" S1 1
HCI "C3'" S1 1
HCI "C4'" S1 1
HCI "C5'" S1 1
HCI "C6'" S1 1
HCI "C1'" F1 1
HCI "C2'" F1 1
HCI "C3'" F1 1
HCI "C4'" F1 1
HCI "C5'" F1 1
HCI "C6'" F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HCI
_pdbe_chem_comp_rdkit_properties.exactmw 150.068
_pdbe_chem_comp_rdkit_properties.amw 150.177
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 79.618
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.649
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.133
_pdbe_chem_comp_rdkit_properties.chi0v 5.316
_pdbe_chem_comp_rdkit_properties.chi1v 2.658
_pdbe_chem_comp_rdkit_properties.chi2v 0.790
_pdbe_chem_comp_rdkit_properties.chi3v 0.790
_pdbe_chem_comp_rdkit_properties.chi4v 0.426
_pdbe_chem_comp_rdkit_properties.chi0n 15.316
_pdbe_chem_comp_rdkit_properties.chi1n 7.566
_pdbe_chem_comp_rdkit_properties.chi2n 0.790
_pdbe_chem_comp_rdkit_properties.chi3n 0.790
_pdbe_chem_comp_rdkit_properties.chi4n 0.426
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.887
_pdbe_chem_comp_rdkit_properties.kappa2 3.760
_pdbe_chem_comp_rdkit_properties.kappa3 2.846
_pdbe_chem_comp_rdkit_properties.Phi 0.645
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HCI UniChem DrugBank DB02024
HCI UniChem 'KEGG LIGAND' C05629
HCI UniChem ChEBI 28631
HCI UniChem ZINC ZINC000000154564
HCI UniChem eMolecules 480962
HCI UniChem fdasrs 5Q445IN5CU
HCI UniChem SureChEMBL SCHEMBL3419
HCI UniChem HMDB HMDB0000764
HCI UniChem NMRShiftDB 20096530
HCI UniChem ACTor 501-52-0
HCI UniChem BindingDb 50304072
HCI UniChem 'EPA CompTox Dashboard' DTXSID2047064
HCI UniChem MetaboLights MTBLC28631
HCI UniChem BRENDA 116408
HCI UniChem BRENDA 12555
HCI UniChem BRENDA 134369
HCI UniChem BRENDA 29508
HCI UniChem BRENDA 30591
HCI UniChem BRENDA 3439
HCI UniChem BRENDA 34832
HCI UniChem BRENDA 44237
HCI UniChem BRENDA 5488
HCI UniChem BRENDA 83912
HCI UniChem BRENDA 92788
HCI UniChem ChemicalBook CB6230832
HCI UniChem MedChemExpress HY-Y1088
HCI UniChem 'Probes And Drugs' PD008213
HCI UniChem CCDC YASFIJ
HCI UniChem 'PubChem TPHARMA' 15114489
HCI UniChem PubChem 107
HCI UniChem Mcule MCULE-1670073750
HCI UniChem Nikkaji J2.601H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HCI C1 2.442 0.112 -0.221 ETKDGv3 1
HCI O1 2.151 0.505 -1.383 ETKDGv3 2
HCI O2 3.307 0.862 0.571 ETKDGv3 3
HCI C2 1.827 -1.139 0.325 ETKDGv3 4
HCI C3 0.658 -0.829 1.267 ETKDGv3 5
HCI "C1'" -0.510 -0.226 0.528 ETKDGv3 6
HCI "C2'" -0.695 1.106 0.498 ETKDGv3 7
HCI "C3'" -1.825 1.684 -0.259 ETKDGv3 8
HCI "C4'" -2.665 0.884 -0.926 ETKDGv3 9
HCI "C5'" -2.463 -0.579 -0.908 ETKDGv3 10
HCI "C6'" -1.442 -1.107 -0.221 ETKDGv3 11
HCI HO2 3.718 1.719 0.222 ETKDGv3 12
HCI H21 2.604 -1.698 0.889 ETKDGv3 13
HCI H22 1.483 -1.792 -0.507 ETKDGv3 14
HCI H31 0.999 -0.157 2.086 ETKDGv3 15
HCI H32 0.328 -1.775 1.748 ETKDGv3 16
HCI "H2'" -0.017 1.771 1.019 ETKDGv3 17
HCI "H3'" -1.970 2.757 -0.274 ETKDGv3 18
HCI "H4'" -3.492 1.306 -1.482 ETKDGv3 19
HCI "H5'" -3.141 -1.223 -1.453 ETKDGv3 20
HCI "H6'" -1.296 -2.180 -0.215 ETKDGv3 21
#