data_HBA
#
_chem_comp.id HBA
_chem_comp.name P-HYDROXYBENZALDEHYDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2025-04-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 122.121
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HBA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1OYB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HBA "C1'" "C1'" C 0 1 N N N N N N 32.884 72.112 18.437 0.438 0.009 -2.440 "C1'" HBA 1
HBA "O1'" "O1'" O 0 1 N N N N N N 32.210 71.477 17.598 -0.527 0.011 -3.173 "O1'" HBA 2
HBA C1 C1 C 0 1 Y N N N N N 34.041 71.510 18.914 0.255 -0.000 -0.983 C1 HBA 3
HBA C2 C2 C 0 1 Y N N N N N 34.726 72.184 19.885 1.368 -0.003 -0.135 C2 HBA 4
HBA C3 C3 C 0 1 Y N N N N N 35.811 71.625 20.497 1.191 -0.012 1.224 C3 HBA 5
HBA C4 C4 C 0 1 Y N N N N N 36.229 70.372 20.115 -0.091 -0.018 1.761 C4 HBA 6
HBA C5 C5 C 0 1 Y N N N N N 35.569 69.677 19.118 -1.200 -0.020 0.922 C5 HBA 7
HBA C6 C6 C 0 1 Y N N N N N 34.461 70.239 18.513 -1.034 -0.006 -0.438 C6 HBA 8
HBA O4 O4 O 0 1 N N N N N N 37.152 69.876 20.790 -0.260 -0.026 3.107 O4 HBA 9
HBA "H1'" "H1'" H 0 1 N N N N N N 32.496 73.103 18.727 1.434 0.013 -2.859 "H1'" HBA 10
HBA H2 H2 H 0 1 N N N N N N 34.398 73.195 20.179 2.365 0.001 -0.550 H2 HBA 11
HBA H3 H3 H 0 1 N N N N N N 36.342 72.178 21.289 2.050 -0.015 1.880 H3 HBA 12
HBA H5 H5 H 0 1 N N N N N N 35.924 68.680 18.807 -2.195 -0.025 1.344 H5 HBA 13
HBA H6 H6 H 0 1 N N N N N N 33.922 69.684 17.726 -1.897 -0.003 -1.088 H6 HBA 14
HBA HO4 HO4 H 0 1 N N N N N N 37.440 69.010 20.526 -0.297 0.897 3.390 HO4 HBA 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HBA "C1'" "O1'" DOUB N N 1
HBA "C1'" C1 SING N N 2
HBA "C1'" "H1'" SING N N 3
HBA C1 C2 SING Y N 4
HBA C1 C6 DOUB Y N 5
HBA C2 C3 DOUB Y N 6
HBA C2 H2 SING N N 7
HBA C3 C4 SING Y N 8
HBA C3 H3 SING N N 9
HBA C4 C5 DOUB Y N 10
HBA C4 O4 SING N N 11
HBA C5 C6 SING Y N 12
HBA C5 H5 SING N N 13
HBA C6 H6 SING N N 14
HBA O4 HO4 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HBA SMILES ACDLabs 10.04 "O=Cc1ccc(O)cc1"
HBA SMILES_CANONICAL CACTVS 3.341 "Oc1ccc(C=O)cc1"
HBA SMILES CACTVS 3.341 "Oc1ccc(C=O)cc1"
HBA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C=O)O"
HBA SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C=O)O"
HBA InChI InChI 1.03 "InChI=1S/C7H6O2/c8-5-6-1-3-7(9)4-2-6/h1-5,9H"
HBA InChIKey InChI 1.03 RGHHSNMVTDWUBI-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HBA "SYSTEMATIC NAME" ACDLabs 10.04 4-hydroxybenzaldehyde
HBA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-hydroxybenzaldehyde
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HBA 'Create component' 1999-07-08 EBI
HBA 'Modify descriptor' 2011-06-04 RCSB
HBA 'Modify PCM' 2025-04-30 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id HBA
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom "C1'"
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id HBA
_pdbe_chem_comp_drugbank_details.drugbank_id DB03560
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name P-Hydroxybenzaldehyde
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 123-08-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HBA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03560
_pdbe_chem_comp_drugbank_classification.parent Hydroxybenzaldehydes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as hydroxybenzaldehydes. These are organic aromatic compounds containing a benzene ring carrying an aldehyde group and a hydroxyl group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
HBA DB03560 'Amine oxidase [flavin-containing] B' Humans P27338 unknown 1
HBA DB03560 '4-aminobutyrate aminotransferase, mitochondrial' Humans P80404 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HBA "C1'" C 4.299 2.857 1
HBA "O1'" O 5.598 3.607 2
HBA C1 C 4.299 1.357 3
HBA C2 C 3.000 0.608 4
HBA C3 C 3.000 -0.892 5
HBA C4 C 4.299 -1.643 6
HBA C5 C 5.598 -0.892 7
HBA C6 C 5.598 0.608 8
HBA O4 O 4.299 -3.143 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HBA "C1'" "O1'" DOUBLE NONE 1
HBA "C1'" C1 SINGLE NONE 2
HBA C1 C2 DOUBLE NONE 3
HBA C1 C6 SINGLE NONE 4
HBA C2 C3 SINGLE NONE 5
HBA C3 C4 DOUBLE NONE 6
HBA C4 C5 SINGLE NONE 7
HBA C4 O4 SINGLE NONE 8
HBA C5 C6 DOUBLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HBA MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HBA phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HBA C1 S1 1
HBA C2 S1 1
HBA C3 S1 1
HBA C4 S1 1
HBA C5 S1 1
HBA C6 S1 1
HBA C1 F1 1
HBA C2 F1 1
HBA C3 F1 1
HBA C4 F1 1
HBA C5 F1 1
HBA C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HBA
_pdbe_chem_comp_rdkit_properties.exactmw 122.037
_pdbe_chem_comp_rdkit_properties.amw 122.123
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 61.269
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.688
_pdbe_chem_comp_rdkit_properties.CrippenMR 32.618
_pdbe_chem_comp_rdkit_properties.chi0v 4.316
_pdbe_chem_comp_rdkit_properties.chi1v 2.158
_pdbe_chem_comp_rdkit_properties.chi2v 0.704
_pdbe_chem_comp_rdkit_properties.chi3v 0.704
_pdbe_chem_comp_rdkit_properties.chi4v 0.352
_pdbe_chem_comp_rdkit_properties.chi0n 10.316
_pdbe_chem_comp_rdkit_properties.chi1n 5.066
_pdbe_chem_comp_rdkit_properties.chi2n 0.704
_pdbe_chem_comp_rdkit_properties.chi3n 0.704
_pdbe_chem_comp_rdkit_properties.chi4n 0.352
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.836
_pdbe_chem_comp_rdkit_properties.kappa2 2.307
_pdbe_chem_comp_rdkit_properties.kappa3 1.288
_pdbe_chem_comp_rdkit_properties.Phi 0.471
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HBA UniChem DrugBank DB03560
HBA UniChem 'KEGG LIGAND' C00633
HBA UniChem ChEBI 17597
HBA UniChem ZINC ZINC000000156709
HBA UniChem eMolecules 481831
HBA UniChem fdasrs O1738X3Y38
HBA UniChem SureChEMBL SCHEMBL37193
HBA UniChem HMDB HMDB0011718
HBA UniChem 'PubChem TPHARMA' 14867231
HBA UniChem PubChem 126
HBA UniChem Mcule MCULE-3788300475
HBA UniChem NMRShiftDB 10005739
HBA UniChem ACTor 123-08-0
HBA UniChem ACTor 65581-83-1
HBA UniChem Nikkaji J43.312H
HBA UniChem 'EPA CompTox Dashboard' DTXSID8059552
HBA UniChem MetaboLights MTBLC17597
HBA UniChem BRENDA 108410
HBA UniChem BRENDA 233478
HBA UniChem BRENDA 34543
HBA UniChem BRENDA 3659
HBA UniChem BRENDA 711
HBA UniChem Rhea 17597
HBA UniChem ChemicalBook CB6446138
HBA UniChem MedChemExpress HY-Y0313
HBA UniChem 'Probes And Drugs' PD006812
HBA UniChem CCDC PHBALD
HBA UniChem BindingDb 50177411
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HBA "C1'" 2.644 0.099 -0.047 ETKDGv3 1
HBA "O1'" 3.256 1.193 -0.167 ETKDGv3 2
HBA C1 1.172 0.055 -0.022 ETKDGv3 3
HBA C2 0.534 -1.121 0.108 ETKDGv3 4
HBA C3 -0.943 -1.171 0.133 ETKDGv3 5
HBA C4 -1.659 -0.041 0.027 ETKDGv3 6
HBA C5 -0.963 1.255 -0.116 ETKDGv3 7
HBA C6 0.375 1.304 -0.139 ETKDGv3 8
HBA O4 -3.052 -0.071 0.049 ETKDGv3 9
HBA "H1'" 3.218 -0.816 0.039 ETKDGv3 10
HBA H2 1.090 -2.047 0.195 ETKDGv3 11
HBA H3 -1.439 -2.128 0.238 ETKDGv3 12
HBA H5 -1.539 2.168 -0.202 ETKDGv3 13
HBA H6 0.869 2.261 -0.244 ETKDGv3 14
HBA HO4 -3.565 -0.940 0.146 ETKDGv3 15
#