data_HAE
#
_chem_comp.id HAE
_chem_comp.name 'ACETOHYDROXAMIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C2 H5 N O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 75.067
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HAE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UBP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HAE C1 C1 C 0 1 N N N N N N 28.792 70.429 75.753 -0.622 0.000 1.846 C1 HAE 1
HAE C2 C2 C 0 1 N N N N N N 29.316 71.343 74.669 0.071 0.000 0.508 C2 HAE 2
HAE O2 O2 O 0 1 N N N N N N 30.094 70.888 73.817 1.283 0.000 0.453 O2 HAE 3
HAE N N N 0 1 N N N N N N 28.943 72.616 74.696 -0.654 0.000 -0.627 N HAE 4
HAE O O O 0 1 N N N N N N 29.346 73.398 73.614 -0.002 0.000 -1.884 O HAE 5
HAE H11 1H1 H 0 1 N N N N N N 28.092 70.838 76.519 -1.245 -0.890 1.932 H11 HAE 6
HAE H12 2H1 H 0 1 N N N N N N 28.317 69.541 75.273 0.122 0.000 2.641 H12 HAE 7
HAE H13 3H1 H 0 1 N N N N N N 29.658 69.959 76.274 -1.245 0.890 1.932 H13 HAE 8
HAE HN HN H 0 1 N N N N N N 28.393 72.963 75.481 -1.623 0.000 -0.583 HN HAE 9
HAE HO HO H 0 1 N N N N N N 29.078 74.309 73.633 -0.695 0.000 -2.558 HO HAE 10
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HAE C1 C2 SING N N 1
HAE C1 H11 SING N N 2
HAE C1 H12 SING N N 3
HAE C1 H13 SING N N 4
HAE C2 O2 DOUB N N 5
HAE C2 N SING N N 6
HAE N O SING N N 7
HAE N HN SING N N 8
HAE O HO SING N N 9
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HAE SMILES ACDLabs 10.04 'O=C(NO)C'
HAE SMILES_CANONICAL CACTVS 3.341 'CC(=O)NO'
HAE SMILES CACTVS 3.341 'CC(=O)NO'
HAE SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CC(=O)NO'
HAE SMILES 'OpenEye OEToolkits' 1.5.0 'CC(=O)NO'
HAE InChI InChI 1.03 'InChI=1S/C2H5NO2/c1-2(4)3-5/h5H,1H3,(H,3,4)'
HAE InChIKey InChI 1.03 RRUDCFGSUDOHDG-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HAE 'SYSTEMATIC NAME' ACDLabs 10.04 N-hydroxyacetamide
HAE 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 N-hydroxyethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HAE 'Create component' 1999-07-08 RCSB
HAE 'Modify descriptor' 2011-06-04 RCSB
HAE 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id HAE
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id HAE
_pdbe_chem_comp_drugbank_details.drugbank_id DB00551
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Acetohydroxamic acid'
_pdbe_chem_comp_drugbank_details.description
'Acetohydroxamic Acid, a synthetic drug derived from hydroxylamine and ethyl acetate, is similar in structure to urea. In the urine, it acts as an antagonist of the bacterial enzyme urease. Acetohydroxamic Acid has no direct antimicrobial action and does not acidify urine directly. It is used, in addition to antibiotics or medical procedures, to treat chronic urea-splitting urinary infections.'
_pdbe_chem_comp_drugbank_details.cas_number 546-88-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Acetohydroxamic Acid reversibly inhibits the bacterial enzyme urease. This inhibits the hydrolysis of urea and production of ammonia in urine infected with urea-splitting organisms, leading to a decrease in pH and ammonia levels. As antimicrobial agents are more effective in such conditions, the effectiveness of these agents is amplified, resulting in a higher cure rate.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
HAE 'Acetic acid, oxime' DrugBank ?
HAE Acetohydroxamate DrugBank ?
HAE 'Acetohydroxamic acid' DrugBank ?
HAE 'Acetohydroximic acid' DrugBank ?
HAE 'Acetylhydroxamic acid' DrugBank ?
HAE 'Acidum acetohydroxamicum' DrugBank ?
HAE AHA DrugBank ?
HAE 'Cetohyroxamic acid' DrugBank ?
HAE 'Methylhydroxamic acid' DrugBank ?
HAE 'N-Acetyl hydroxyacetamide' DrugBank ?
HAE N-Acetylhydroxylamine DrugBank ?
HAE N-Hydroxyacetamide DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HAE
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00551
_pdbe_chem_comp_drugbank_classification.parent 'Acetohydroxamic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as acetohydroxamic acids. These are organic compounds that contain a hydroxamic acid group carrying a methyl group attached to its carbon center.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
HAE DB00551 'Urease subunit alpha' 'Enterobacter aerogenes' P18314 yes 1
HAE DB00551 'Macrophage metalloelastase' Humans P39900 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HAE C1 C 4.299 -1.590 1
HAE C2 C 4.299 -0.090 2
HAE O2 O 3.000 0.660 3
HAE N N 5.598 0.660 4
HAE O O 6.897 -0.090 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HAE C1 C2 SINGLE NONE 1
HAE C2 O2 DOUBLE NONE 2
HAE C2 N SINGLE NONE 3
HAE N O SINGLE NONE 4
#
_pdbe_chem_comp_substructure.comp_id HAE
_pdbe_chem_comp_substructure.substructure_name amide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles CC(N)=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HAE N F1 1
HAE C2 F1 1
HAE O2 F1 1
HAE C1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HAE
_pdbe_chem_comp_rdkit_properties.exactmw 75.032
_pdbe_chem_comp_rdkit_properties.amw 75.067
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 10
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 36.733
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.488
_pdbe_chem_comp_rdkit_properties.CrippenMR 15.603
_pdbe_chem_comp_rdkit_properties.chi0v 2.264
_pdbe_chem_comp_rdkit_properties.chi1v 0.860
_pdbe_chem_comp_rdkit_properties.chi2v 0.083
_pdbe_chem_comp_rdkit_properties.chi3v 0.083
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 7.264
_pdbe_chem_comp_rdkit_properties.chi1n 3.216
_pdbe_chem_comp_rdkit_properties.chi2n 0.083
_pdbe_chem_comp_rdkit_properties.chi3n 0.083
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 0.733
_pdbe_chem_comp_rdkit_properties.kappa2 1.722
_pdbe_chem_comp_rdkit_properties.kappa3 3.430
_pdbe_chem_comp_rdkit_properties.Phi 0.253
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HAE UniChem DrugBank DB00551
HAE UniChem 'PubChem DOTF' 22395295
HAE UniChem 'KEGG LIGAND' C06808
HAE UniChem ChEBI 27777
HAE UniChem ChEBI 49029
HAE UniChem ZINC ZINC000004658603
HAE UniChem eMolecules 474394
HAE UniChem fdasrs 4RZ82L2GY5
HAE UniChem PharmGKB PA164749213
HAE UniChem HMDB HMDB0014691
HAE UniChem 'PubChem TPHARMA' 15218626
HAE UniChem NMRShiftDB 60020020
HAE UniChem ACTor 546-88-3
HAE UniChem BindingDb 50099857
HAE UniChem DrugCentral 58
HAE UniChem MetaboLights MTBLC27777
HAE UniChem MetaboLights MTBLC49029
HAE UniChem BRENDA 111363
HAE UniChem BRENDA 124278
HAE UniChem BRENDA 3981
HAE UniChem BRENDA 4496
HAE UniChem BRENDA 47787
HAE UniChem BRENDA 49881
HAE UniChem BRENDA 83689
HAE UniChem BRENDA 9542
HAE UniChem ChemicalBook CB6395344
HAE UniChem DailyMed 'ACETOHYDROXAMIC ACID'
HAE UniChem ClinicalTrials 'ACETOHYDROXAMIC ACID'
HAE UniChem ClinicalTrials LITHOSTAT
HAE UniChem rxnorm 'ACETOHYDROXAMIC ACID'
HAE UniChem rxnorm LITHOSTAT
HAE UniChem MedChemExpress HY-B1235
HAE UniChem 'Probes And Drugs' PD002490
HAE UniChem CCDC CEMHEK
HAE UniChem 'EPA CompTox Dashboard' DTXSID7022546
HAE UniChem SureChEMBL SCHEMBL14492
HAE UniChem PubChem 1990
HAE UniChem Mcule MCULE-2682231025
HAE UniChem Nikkaji J23.285H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HAE C1 -1.462 -0.002 -0.032 ETKDGv3 1
HAE C2 -0.052 0.480 -0.150 ETKDGv3 2
HAE O2 0.181 1.712 -0.276 ETKDGv3 3
HAE N 1.031 -0.451 -0.090 ETKDGv3 4
HAE O 2.312 -0.027 -0.198 ETKDGv3 5
HAE H11 -1.625 -0.856 -0.722 ETKDGv3 6
HAE H12 -2.174 0.810 -0.293 ETKDGv3 7
HAE H13 -1.654 -0.331 1.010 ETKDGv3 8
HAE HN 0.838 -1.473 0.017 ETKDGv3 9
HAE HO 2.605 0.138 0.735 ETKDGv3 10
#