data_H97
#
_chem_comp.id H97
_chem_comp.name
;(1R,3R,7E,17beta)-17-[(1R)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,1
0-secoestra-5,7-diene-1,3-diol
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H44 F6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;1,25-dihydroxy-20R-21(3-trideuteromethyl-3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27-hexafluoro-19-nor-cholecalcifero
l (Gemini--0097)
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-07-22
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 594.669
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H97
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3O1E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H97 C1 C1 C 0 1 N N R N N N 2.592 39.827 38.699 -6.610 -2.646 -0.598 C1 H97 1
H97 F1 F1 F 0 1 N N N N N N 3.734 27.272 32.191 6.070 -0.508 0.570 F1 H97 2
H97 O1 O1 O 0 1 N N N N N N 3.974 39.897 38.316 -5.462 -2.867 0.223 O1 H97 3
H97 C2 C2 C 0 1 N N N N N N 1.876 41.054 38.154 -7.878 -2.800 0.244 C2 H97 4
H97 F2 F2 F 0 1 N N N N N N 2.394 28.291 33.546 6.344 -2.607 1.429 F2 H97 5
H97 O2 O2 O 0 1 N N N N N N 0.291 41.090 39.942 -8.974 -2.052 2.264 O2 H97 6
H97 C3 C3 C 0 1 N N R N N N 0.404 41.028 38.523 -7.827 -1.843 1.437 C3 H97 7
H97 F3 F3 F 0 1 N N N N N N 3.309 29.446 31.961 4.422 -1.444 1.846 F3 H97 8
H97 O3 O3 O 0 1 N N N N N N 5.202 27.366 33.922 5.802 -2.563 -1.327 O3 H97 9
H97 C4 C4 C 0 1 N N N N N N -0.306 39.771 37.987 -7.819 -0.397 0.929 C4 H97 10
H97 F4 F4 F 0 1 N N N N N N 5.802 28.778 31.668 4.997 -4.510 0.531 F4 H97 11
H97 O4 O4 O 0 1 N N N N N N 2.339 25.638 39.604 2.087 5.567 0.337 O4 H97 12
H97 C5 C5 C 0 1 N N N N N N 0.486 38.520 38.287 -6.675 -0.237 -0.047 C5 H97 13
H97 F5 F5 F 0 1 N N N N N N 6.801 29.468 33.472 3.492 -4.152 -1.150 F5 H97 14
H97 C6 C6 C 0 1 N N N N N N -0.154 37.388 38.653 -5.797 0.751 0.088 C6 H97 15
H97 F6 F6 F 0 1 N N N N N N 5.176 30.621 32.484 3.075 -3.347 0.948 F6 H97 16
H97 C7 C7 C 0 1 N N N N N N 0.551 36.135 38.961 -4.632 0.827 -0.807 C7 H97 17
H97 C8 C8 C 0 1 N N N N N N -0.086 34.955 38.869 -3.698 1.751 -0.604 C8 H97 18
H97 C9 C9 C 0 1 N N N N N N -1.526 34.876 38.402 -3.776 2.753 0.539 C9 H97 19
H97 C10 C10 C 0 1 N N N N N N 1.985 38.552 38.129 -6.556 -1.230 -1.182 C10 H97 20
H97 C11 C11 C 0 1 N N N N N N -1.609 33.914 37.211 -2.465 2.782 1.322 C11 H97 21
H97 C12 C12 C 0 1 N N N N N N -0.864 32.590 37.415 -1.247 2.904 0.391 C12 H97 22
H97 C13 C13 C 0 1 N N R N N N 0.569 32.829 37.858 -1.267 1.716 -0.543 C13 H97 23
H97 C14 C14 C 0 1 N N S N N N 0.542 33.617 39.154 -2.489 1.877 -1.483 C14 H97 24
H97 C15 C15 C 0 1 N N N N N N 1.981 33.549 39.646 -2.244 0.744 -2.482 C15 H97 25
H97 C16 C16 C 0 1 N N N N N N 2.482 32.192 39.130 -0.714 0.840 -2.742 C16 H97 26
H97 C17 C17 C 0 1 N N R N N N 1.364 31.597 38.266 -0.105 1.538 -1.508 C17 H97 27
H97 C18 C18 C 0 1 N N N N N N 1.345 33.640 36.824 -1.446 0.434 0.273 C18 H97 28
H97 C20 C20 C 0 1 N N R N N N 1.859 30.688 37.129 0.971 0.647 -0.886 C20 H97 29
H97 C21 C21 C 0 1 N N N N N N 3.372 30.777 36.952 2.061 0.365 -1.922 C21 H97 30
H97 C22 C22 C 0 1 N N N N N N 3.833 30.026 35.776 3.035 -0.588 -1.363 C22 H97 31
H97 C23 C23 C 0 1 N N N N N N 4.207 29.421 34.827 3.811 -1.347 -0.918 C23 H97 32
H97 C24 C24 C 0 1 N N N N N N 4.668 28.663 33.646 4.784 -2.300 -0.359 C24 H97 33
H97 C25 C25 C 0 1 N N N N N N 5.655 29.432 32.801 4.072 -3.605 0.000 C25 H97 34
H97 C26 C26 C 0 1 N N N N N N 3.467 28.417 32.790 5.419 -1.702 0.898 C26 H97 35
H97 C27 C27 C 0 1 N N N N N N 1.438 29.223 37.359 1.587 1.358 0.321 C27 H97 36
H97 C28 C28 C 0 1 N N N N N N 2.360 28.405 38.292 2.112 2.730 -0.109 C28 H97 37
H97 C29 C29 C 0 1 N N N N N N 1.733 28.000 39.635 2.837 3.389 1.066 C29 H97 38
H97 C30 C30 C 0 1 N N N N N N 2.429 26.844 40.371 3.250 4.810 0.678 C30 H97 39
H97 C31 C31 C 0 1 N N N N N N 1.769 26.564 41.713 4.195 4.757 -0.524 C31 H97 40
H97 C32 C32 C 0 1 N N N N N N 3.894 27.147 40.627 3.963 5.475 1.858 C32 H97 41
H97 H1 H1 H 0 1 N N N N N N 2.490 39.807 39.794 -6.623 -3.373 -1.410 H1 H97 42
H97 HO1 HO1 H 0 1 N N N N N N 4.361 40.690 38.668 -4.621 -2.784 -0.247 HO1 H97 43
H97 H2 H2 H 0 1 N N N N N N 2.337 41.957 38.581 -8.750 -2.570 -0.368 H2 H97 44
H97 H2A H2A H 0 1 N N N N N N 1.971 41.067 37.058 -7.950 -3.826 0.605 H2A H97 45
H97 HO2 HO2 H 0 1 N N N N N N -0.626 41.075 40.188 -9.007 -1.477 3.041 HO2 H97 46
H97 H3 H3 H 0 1 N N N N N N -0.089 41.895 38.059 -6.923 -2.031 2.015 H3 H97 47
H97 HO3 HO3 H 0 1 N N N N N N 5.471 26.954 33.109 5.471 -2.944 -2.152 HO3 H97 48
H97 H4 H4 H 0 1 N N N N N N -1.293 39.690 38.466 -8.762 -0.180 0.428 H4 H97 49
H97 H4A H4A H 0 1 N N N N N N -0.421 39.866 36.897 -7.682 0.284 1.769 H4A H97 50
H97 HO4 HO4 H 0 1 N N N N N N 2.773 24.933 40.070 2.274 6.481 0.080 HO4 H97 51
H97 H6 H6 H 0 1 N N N N N N -1.232 37.404 38.722 -5.939 1.498 0.855 H6 H97 52
H97 H7 H7 H 0 1 N N N N N N 1.587 36.163 39.263 -4.535 0.132 -1.628 H7 H97 53
H97 H9 H9 H 0 1 N N N N N N -2.161 34.507 39.221 -3.975 3.745 0.134 H9 H97 54
H97 H9A H9A H 0 1 N N N N N N -1.871 35.875 38.096 -4.588 2.470 1.209 H9A H97 55
H97 H10 H10 H 0 1 N N N N N N 2.227 38.496 37.057 -5.608 -1.083 -1.699 H10 H97 56
H97 H10A H10A H 0 0 N N N N N N 2.413 37.690 38.662 -7.382 -1.089 -1.880 H10A H97 57
H97 H11 H11 H 0 1 N N N N N N -2.670 33.681 37.038 -2.478 3.632 2.004 H11 H97 58
H97 H11A H11A H 0 0 N N N N N N -1.169 34.418 36.338 -2.378 1.864 1.903 H11A H97 59
H97 H12 H12 H 0 1 N N N N N N -1.383 32.004 38.188 -1.311 3.828 -0.183 H12 H97 60
H97 H12A H12A H 0 0 N N N N N N -0.856 32.036 36.465 -0.330 2.896 0.980 H12A H97 61
H97 H14 H14 H 0 1 N N N N N N -0.083 33.245 39.979 -2.471 2.848 -1.977 H14 H97 62
H97 H15 H15 H 0 1 N N N N N N 2.582 34.378 39.244 -2.501 -0.221 -2.043 H15 H97 63
H97 H15A H15A H 0 0 N N N N N N 2.033 33.605 40.743 -2.806 0.910 -3.400 H15A H97 64
H97 H16 H16 H 0 1 N N N N N N 3.396 32.326 38.532 -0.291 -0.157 -2.862 H16 H97 65
H97 H16A H16A H 0 0 N N N N N N 2.708 31.523 39.974 -0.523 1.437 -3.634 H16A H97 66
H97 H17 H17 H 0 1 N N N N N N 0.731 30.871 38.797 0.314 2.507 -1.779 H17 H97 67
H97 H18 H18 H 0 1 N N N N N N 2.376 33.794 37.176 -2.424 0.445 0.756 H18 H97 68
H97 H18A H18A H 0 0 N N N N N N 1.362 33.095 35.868 -1.377 -0.430 -0.387 H18A H97 69
H97 H18B H18B H 0 0 N N N N N N 0.857 34.615 36.682 -0.667 0.375 1.033 H18B H97 70
H97 H20 H20 H 0 1 N N N N N N 1.384 31.048 36.204 0.524 -0.293 -0.564 H20 H97 71
H97 H21 H21 H 0 1 N N N N N N 3.650 31.834 36.826 1.609 -0.061 -2.818 H21 H97 72
H97 H21A H21A H 0 0 N N N N N N 3.856 30.360 37.847 2.569 1.295 -2.178 H21A H97 73
H97 H27 H27 H 0 1 N N N N N N 0.435 29.234 37.811 0.829 1.485 1.094 H27 H97 74
H97 H27A H27A H 0 0 N N N N N N 1.431 28.723 36.379 2.410 0.761 0.714 H27A H97 75
H97 H28 H28 H 0 1 N N N N N N 2.637 27.482 37.762 2.804 2.610 -0.942 H28 H97 76
H97 H28A H28A H 0 0 N N N N N N 3.245 29.021 38.509 1.276 3.358 -0.418 H28A H97 77
H97 H29 H29 H 0 1 N N N N N N 1.767 28.880 40.294 2.173 3.427 1.929 H29 H97 78
H97 H29A H29A H 0 0 N N N N N N 0.697 27.689 39.435 3.725 2.809 1.316 H29A H97 79
H97 H31 H31 H 0 1 N N N N N N 1.814 27.467 42.340 4.561 5.760 -0.743 H31 H97 80
H97 H31A H31A H 0 0 N N N N N N 0.718 26.281 41.553 5.037 4.104 -0.296 H31A H97 81
H97 H31B H31B H 0 0 N N N N N N 2.297 25.741 42.217 3.659 4.369 -1.390 H31B H97 82
H97 H32 H32 H 0 1 N N N N N N 3.980 28.072 41.216 3.289 5.513 2.714 H32 H97 83
H97 H32A H32A H 0 0 N N N N N N 4.349 26.314 41.184 4.850 4.897 2.118 H32A H97 84
H97 H32B H32B H 0 0 N N N N N N 4.415 27.274 39.667 4.256 6.487 1.581 H32B H97 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H97 C10 C1 SING N N 1
H97 C2 C1 SING N N 2
H97 O1 C1 SING N N 3
H97 C1 H1 SING N N 4
H97 F1 C26 SING N N 5
H97 O1 HO1 SING N N 6
H97 C2 C3 SING N N 7
H97 C2 H2 SING N N 8
H97 C2 H2A SING N N 9
H97 C26 F2 SING N N 10
H97 C3 O2 SING N N 11
H97 O2 HO2 SING N N 12
H97 C4 C3 SING N N 13
H97 C3 H3 SING N N 14
H97 F3 C26 SING N N 15
H97 C24 O3 SING N N 16
H97 O3 HO3 SING N N 17
H97 C4 C5 SING N N 18
H97 C4 H4 SING N N 19
H97 C4 H4A SING N N 20
H97 F4 C25 SING N N 21
H97 O4 C30 SING N N 22
H97 O4 HO4 SING N N 23
H97 C10 C5 SING N N 24
H97 C5 C6 DOUB N N 25
H97 C25 F5 SING N E 26
H97 C6 C7 SING N N 27
H97 C6 H6 SING N N 28
H97 F6 C25 SING N N 29
H97 C8 C7 DOUB N N 30
H97 C7 H7 SING N N 31
H97 C9 C8 SING N N 32
H97 C8 C14 SING N N 33
H97 C11 C9 SING N N 34
H97 C9 H9 SING N N 35
H97 C9 H9A SING N N 36
H97 C10 H10 SING N N 37
H97 C10 H10A SING N N 38
H97 C11 C12 SING N N 39
H97 C11 H11 SING N N 40
H97 C11 H11A SING N N 41
H97 C12 C13 SING N N 42
H97 C12 H12 SING N N 43
H97 C12 H12A SING N N 44
H97 C18 C13 SING N N 45
H97 C13 C17 SING N N 46
H97 C13 C14 SING N N 47
H97 C14 C15 SING N N 48
H97 C14 H14 SING N N 49
H97 C16 C15 SING N N 50
H97 C15 H15 SING N N 51
H97 C15 H15A SING N N 52
H97 C17 C16 SING N N 53
H97 C16 H16 SING N N 54
H97 C16 H16A SING N N 55
H97 C20 C17 SING N N 56
H97 C17 H17 SING N N 57
H97 C18 H18 SING N N 58
H97 C18 H18A SING N N 59
H97 C18 H18B SING N N 60
H97 C21 C20 SING N N 61
H97 C20 C27 SING N N 62
H97 C20 H20 SING N N 63
H97 C22 C21 SING N N 64
H97 C21 H21 SING N N 65
H97 C21 H21A SING N N 66
H97 C23 C22 TRIP N N 67
H97 C24 C23 SING N N 68
H97 C26 C24 SING N N 69
H97 C25 C24 SING N N 70
H97 C27 C28 SING N N 71
H97 C27 H27 SING N N 72
H97 C27 H27A SING N N 73
H97 C28 C29 SING N N 74
H97 C28 H28 SING N N 75
H97 C28 H28A SING N N 76
H97 C29 C30 SING N N 77
H97 C29 H29 SING N N 78
H97 C29 H29A SING N N 79
H97 C30 C32 SING N N 80
H97 C30 C31 SING N N 81
H97 C31 H31 SING N N 82
H97 C31 H31A SING N N 83
H97 C31 H31B SING N N 84
H97 C32 H32 SING N N 85
H97 C32 H32A SING N N 86
H97 C32 H32B SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H97 SMILES ACDLabs 12.01 "FC(F)(F)C(O)(C#CCC(CCCC(O)(C)C)C2CCC3C(=C\C=C1\CC(O)CC(O)C1)\CCCC23C)C(F)(F)F"
H97 SMILES_CANONICAL CACTVS 3.370 "CC(C)(O)CCC[C@H](CC#CC(O)(C(F)(F)F)C(F)(F)F)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/[CH]=[C]3C[C@@H](O)[CH2][C@H](O)C3"
H97 SMILES CACTVS 3.370 "CC(C)(O)CCC[CH](CC#CC(O)(C(F)(F)F)C(F)(F)F)[CH]1CC[CH]2C(CCC[C]12C)=C[CH]=[C]3C[CH](O)[CH2][CH](O)C3"
H97 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@]12CCC/C(=C\C=C3C[C@H](C[C@@H](C3)O)O)/[C@@H]1CC[C@@H]2[C@H](CCCC(C)(C)O)CC#CC(C(F)(F)F)(C(F)(F)F)O"
H97 SMILES "OpenEye OEToolkits" 1.7.0 "CC12CCCC(=CC=C3CC(CC(C3)O)O)C1CCC2C(CCCC(C)(C)O)CC#CC(C(F)(F)F)(C(F)(F)F)O"
H97 InChI InChI 1.03 InChI=1S/C31H44F6O4/c1-27(2,40)14-4-7-21(9-6-16-29(41,30(32,33)34)31(35,36)37)25-12-13-26-22(8-5-15-28(25,26)3)11-10-20-17-23(38)19-24(39)18-20/h10-11,21,23-26,38-41H,4-5,7-9,12-15,17-19H2,1-3H3/b22-11+/t21-,23-,24-,25-,26+,28-/m1/s1
H97 InChIKey InChI 1.03 RAYDHJNMFBHXHA-DUSBBPLISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H97 "SYSTEMATIC NAME" ACDLabs 12.01 (1R,3R,7E,17beta)-17-[(6R)-1,1,1-trifluoro-2,10-dihydroxy-10-methyl-2-(trifluoromethyl)undec-3-yn-6-yl]-9,10-secoestra-5,7-diene-1,3-diol
H97 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(6R)-1,1,1-trifluoro-2,10-dihydroxy-10-methyl-2-(trifluoromethyl)undec-3-yn-6-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]cyclohexane-1,3-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H97 'Create component' 2010-07-22 RCSB
H97 'Modify descriptor' 2011-06-04 RCSB
H97 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id H97
_pdbx_chem_comp_synonyms.name
"1,25-dihydroxy-20R-21(3-trideuteromethyl-3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27-hexafluoro-19-nor-cholecalciferol (Gemini--0097)"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id H97
_pdbe_chem_comp_synonyms.name
'1,25-dihydroxy-20R-21(3-trideuteromethyl-3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27-hexafluoro-19-nor-cholecalciferol (Gemini--0097)'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H97 C1 C 5.104 -8.008 1
H97 F1 F 14.684 9.563 2
H97 O1 O 3.805 -8.758 3
H97 C2 C 6.404 -8.758 4
H97 F2 F 13.426 9.411 5
H97 O2 O 9.002 -8.758 6
H97 C3 C 7.702 -8.008 7
H97 F3 F 15.644 7.671 8
H97 O3 O 12.327 7.178 9
H97 C4 C 7.702 -6.508 10
H97 F4 F 16.604 5.780 11
H97 O4 O 10.281 8.635 12
H97 C5 C 6.404 -5.758 13
H97 F5 F 14.712 4.820 14
H97 C6 C 6.404 -4.258 15
H97 F6 F 16.452 7.038 16
H97 C7 C 7.702 -3.508 17
H97 C8 C 7.702 -2.008 18
H97 C9 C 6.404 -1.258 19
H97 C10 C 5.104 -6.508 20
H97 C11 C 6.404 0.242 21
H97 C12 C 7.702 0.992 22
H97 C13 C 9.002 0.242 23
H97 C14 C 9.002 -1.258 24
H97 C15 C 10.421 -1.715 25
H97 C16 C 11.296 -0.508 26
H97 C17 C 10.421 0.699 27
H97 C18 C 9.002 1.742 28
H97 C20 C 10.887 2.125 29
H97 C21 C 12.355 2.434 30
H97 C22 C 12.821 3.860 31
H97 C23 C 13.287 5.286 32
H97 C24 C 13.753 6.712 33
H97 C25 C 15.178 6.246 34
H97 C26 C 14.219 8.137 35
H97 C27 C 9.885 3.241 36
H97 C28 C 10.351 4.667 37
H97 C29 C 9.349 5.784 38
H97 C30 C 9.815 7.210 39
H97 C31 C 11.241 6.744 40
H97 C32 C 8.389 7.676 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H97 C10 C1 SINGLE NONE 1
H97 C2 C1 SINGLE NONE 2
H97 C1 O1 SINGLE BEGINDASH 3
H97 F1 C26 SINGLE NONE 4
H97 C2 C3 SINGLE NONE 5
H97 C26 F2 SINGLE NONE 6
H97 C3 O2 SINGLE BEGINWEDGE 7
H97 C4 C3 SINGLE NONE 8
H97 F3 C26 SINGLE NONE 9
H97 C24 O3 SINGLE NONE 10
H97 C4 C5 SINGLE NONE 11
H97 F4 C25 SINGLE NONE 12
H97 O4 C30 SINGLE NONE 13
H97 C10 C5 SINGLE NONE 14
H97 C5 C6 DOUBLE NONE 15
H97 C25 F5 SINGLE NONE 16
H97 C6 C7 SINGLE ENDUPRIGHT 17
H97 F6 C25 SINGLE NONE 18
H97 C8 C7 DOUBLE NONE 19
H97 C9 C8 SINGLE ENDUPRIGHT 20
H97 C8 C14 SINGLE ENDUPRIGHT 21
H97 C11 C9 SINGLE NONE 22
H97 C11 C12 SINGLE NONE 23
H97 C12 C13 SINGLE NONE 24
H97 C13 C18 SINGLE BEGINWEDGE 25
H97 C13 C17 SINGLE NONE 26
H97 C13 C14 SINGLE NONE 27
H97 C14 C15 SINGLE NONE 28
H97 C16 C15 SINGLE NONE 29
H97 C17 C16 SINGLE BEGINWEDGE 30
H97 C20 C17 SINGLE NONE 31
H97 C20 C21 SINGLE BEGINDASH 32
H97 C20 C27 SINGLE NONE 33
H97 C22 C21 SINGLE NONE 34
H97 C23 C22 TRIPLE NONE 35
H97 C24 C23 SINGLE NONE 36
H97 C26 C24 SINGLE NONE 37
H97 C25 C24 SINGLE NONE 38
H97 C27 C28 SINGLE NONE 39
H97 C28 C29 SINGLE NONE 40
H97 C29 C30 SINGLE NONE 41
H97 C30 C32 SINGLE NONE 42
H97 C30 C31 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
H97 MurckoScaffold S1 scaffold 'C(/C=C1\CCCC2CCC[C@@H]12)=C1CCCCC1' InChI=1S/C17H26/c1-2-6-14(7-3-1)12-13-16-9-4-8-15-10-5-11-17(15)16/h12-13,15,17H,1-11H2/b16-13+/t15-,17-/m1/s1 QMCKZOLPXKAVJN-DGOVAZGXSA-N
H97 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
H97 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
H97 C1 S1 1
H97 C2 S1 1
H97 C3 S1 1
H97 C4 S1 1
H97 C5 S1 1
H97 C6 S1 1
H97 C7 S1 1
H97 C8 S1 1
H97 C9 S1 1
H97 C10 S1 1
H97 C11 S1 1
H97 C12 S1 1
H97 C13 S1 1
H97 C14 S1 1
H97 C15 S1 1
H97 C16 S1 1
H97 C17 S1 1
H97 C1 F1 1
H97 C10 F1 1
H97 C5 F1 1
H97 C4 F1 1
H97 C3 F1 1
H97 C2 F1 1
H97 C8 F1 2
H97 C9 F1 2
H97 C11 F1 2
H97 C12 F1 2
H97 C13 F1 2
H97 C14 F1 2
H97 C13 F2 1
H97 C17 F2 1
H97 C16 F2 1
H97 C15 F2 1
H97 C14 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id H97
_pdbe_chem_comp_rdkit_properties.exactmw 594.314
_pdbe_chem_comp_rdkit_properties.amw 594.677
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.806
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 300.626
_pdbe_chem_comp_rdkit_properties.tpsa 80.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.768
_pdbe_chem_comp_rdkit_properties.CrippenMR 143.294
_pdbe_chem_comp_rdkit_properties.chi0v 19.401
_pdbe_chem_comp_rdkit_properties.chi1v 10.200
_pdbe_chem_comp_rdkit_properties.chi2v 4.667
_pdbe_chem_comp_rdkit_properties.chi3v 4.667
_pdbe_chem_comp_rdkit_properties.chi4v 2.840
_pdbe_chem_comp_rdkit_properties.chi0n 63.401
_pdbe_chem_comp_rdkit_properties.chi1n 31.833
_pdbe_chem_comp_rdkit_properties.chi2n 4.667
_pdbe_chem_comp_rdkit_properties.chi3n 4.667
_pdbe_chem_comp_rdkit_properties.chi4n 2.840
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.540
_pdbe_chem_comp_rdkit_properties.kappa1 7.992
_pdbe_chem_comp_rdkit_properties.kappa2 12.595
_pdbe_chem_comp_rdkit_properties.kappa3 8.097
_pdbe_chem_comp_rdkit_properties.Phi 2.455
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
H97 UniChem ZINC ZINC000066156873
H97 UniChem 'PubChem TPHARMA' 16273660
H97 UniChem PubChem 11192655
H97 UniChem Nikkaji J2.355.603K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H97 C1 8.946 -0.634 0.375 ETKDGv3 1
H97 F1 -4.830 -3.736 3.575 ETKDGv3 2
H97 O1 8.933 -1.122 -0.943 ETKDGv3 3
H97 C2 9.139 0.889 0.363 ETKDGv3 4
H97 F2 -7.045 -3.895 3.253 ETKDGv3 5
H97 O2 8.177 2.981 -0.287 ETKDGv3 6
H97 C3 7.961 1.594 -0.323 ETKDGv3 7
H97 F3 -5.676 -3.567 1.499 ETKDGv3 8
H97 O3 -6.144 -1.415 4.389 ETKDGv3 9
H97 C4 6.625 1.257 0.365 ETKDGv3 10
H97 F4 -7.054 -1.336 0.871 ETKDGv3 11
H97 O4 -3.955 3.543 -3.030 ETKDGv3 12
H97 C5 6.458 -0.239 0.560 ETKDGv3 13
H97 F5 -8.402 -1.704 2.634 ETKDGv3 14
H97 C6 5.268 -0.867 0.457 ETKDGv3 15
H97 F6 -7.292 0.238 2.458 ETKDGv3 16
H97 C7 3.984 -0.188 0.162 ETKDGv3 17
H97 C8 2.896 -0.841 -0.292 ETKDGv3 18
H97 C9 2.944 -2.309 -0.695 ETKDGv3 19
H97 C10 7.644 -1.010 1.098 ETKDGv3 20
H97 C11 1.724 -2.732 -1.549 ETKDGv3 21
H97 C12 0.344 -2.296 -0.984 ETKDGv3 22
H97 C13 0.399 -1.008 -0.105 ETKDGv3 23
H97 C14 1.583 -0.131 -0.545 ETKDGv3 24
H97 C15 1.309 1.239 0.080 ETKDGv3 25
H97 C16 -0.226 1.348 0.132 ETKDGv3 26
H97 C17 -0.777 -0.023 -0.338 ETKDGv3 27
H97 C18 0.509 -1.414 1.400 ETKDGv3 28
H97 C20 -2.184 -0.478 0.204 ETKDGv3 29
H97 C21 -2.552 0.067 1.610 ETKDGv3 30
H97 C22 -3.769 -0.567 2.132 ETKDGv3 31
H97 C23 -4.777 -1.086 2.541 ETKDGv3 32
H97 C24 -6.017 -1.720 3.021 ETKDGv3 33
H97 C25 -7.211 -1.126 2.231 ETKDGv3 34
H97 C26 -5.893 -3.254 2.831 ETKDGv3 35
H97 C27 -3.313 -0.236 -0.840 ETKDGv3 36
H97 C28 -3.613 1.245 -1.127 ETKDGv3 37
H97 C29 -4.704 1.379 -2.205 ETKDGv3 38
H97 C30 -5.086 2.843 -2.564 ETKDGv3 39
H97 C31 -5.727 3.577 -1.363 ETKDGv3 40
H97 C32 -6.110 2.810 -3.711 ETKDGv3 41
H97 H1 9.804 -1.082 0.928 ETKDGv3 42
H97 HO1 9.092 -2.101 -0.888 ETKDGv3 43
H97 H2 9.241 1.259 1.408 ETKDGv3 44
H97 H2A 10.080 1.134 -0.176 ETKDGv3 45
H97 HO2 7.566 3.385 -0.957 ETKDGv3 46
H97 H3 7.917 1.255 -1.385 ETKDGv3 47
H97 HO3 -6.979 -1.836 4.723 ETKDGv3 48
H97 H4 5.825 1.680 -0.275 ETKDGv3 49
H97 H4A 6.577 1.752 1.359 ETKDGv3 50
H97 HO4 -3.394 3.793 -2.251 ETKDGv3 51
H97 H6 5.236 -1.934 0.639 ETKDGv3 52
H97 H7 3.907 0.870 0.363 ETKDGv3 53
H97 H9 3.002 -2.946 0.213 ETKDGv3 54
H97 H9A 3.856 -2.498 -1.302 ETKDGv3 55
H97 H10 7.749 -0.778 2.181 ETKDGv3 56
H97 H10A 7.493 -2.109 1.011 ETKDGv3 57
H97 H11 1.737 -3.835 -1.681 ETKDGv3 58
H97 H11A 1.845 -2.287 -2.561 ETKDGv3 59
H97 H12 -0.090 -3.140 -0.404 ETKDGv3 60
H97 H12A -0.341 -2.145 -1.847 ETKDGv3 61
H97 H14 1.530 0.021 -1.650 ETKDGv3 62
H97 H15 1.726 1.298 1.109 ETKDGv3 63
H97 H15A 1.749 2.052 -0.538 ETKDGv3 64
H97 H16 -0.517 1.599 1.171 ETKDGv3 65
H97 H16A -0.577 2.164 -0.535 ETKDGv3 66
H97 H17 -0.873 0.071 -1.445 ETKDGv3 67
H97 H18 1.403 -2.036 1.595 ETKDGv3 68
H97 H18A 0.573 -0.530 2.066 ETKDGv3 69
H97 H18B -0.365 -2.020 1.714 ETKDGv3 70
H97 H20 -2.141 -1.585 0.300 ETKDGv3 71
H97 H21 -1.739 -0.137 2.333 ETKDGv3 72
H97 H21A -2.713 1.163 1.589 ETKDGv3 73
H97 H27 -3.032 -0.741 -1.790 ETKDGv3 74
H97 H27A -4.247 -0.732 -0.495 ETKDGv3 75
H97 H28 -3.960 1.733 -0.196 ETKDGv3 76
H97 H28A -2.689 1.744 -1.480 ETKDGv3 77
H97 H29 -4.344 0.868 -3.126 ETKDGv3 78
H97 H29A -5.615 0.839 -1.862 ETKDGv3 79
H97 H31 -5.000 3.720 -0.538 ETKDGv3 80
H97 H31A -6.597 3.005 -0.973 ETKDGv3 81
H97 H31B -6.077 4.586 -1.671 ETKDGv3 82
H97 H32 -6.392 3.843 -4.009 ETKDGv3 83
H97 H32A -7.031 2.267 -3.405 ETKDGv3 84
H97 H32B -5.680 2.303 -4.602 ETKDGv3 85
#