data_GZI
#
_chem_comp.id GZI
_chem_comp.name
"(2~{R})-3-[(1~{R},3~{R})-1-[5-fluoranyl-2-[2-(3-fluoranylpropylamino)ethoxy]-3-methyl-pyridin-4-yl]-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-2-yl]-2-methyl-propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H34 F2 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-04
_chem_comp.pdbx_modified_date 2023-01-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 500.581
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GZI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7QVL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GZI C1 C1 C 0 1 Y N N N N N 18.282 -13.266 12.726 0.882 -0.697 -0.219 C1 GZI 1
GZI C2 C2 C 0 1 Y N N N N N 18.534 -12.706 11.470 -0.442 -0.550 0.156 C2 GZI 2
GZI C3 C3 C 0 1 Y N N N N N 18.415 -13.550 10.379 -0.814 -0.937 1.439 C3 GZI 3
GZI C7 C4 C 0 1 N N N N N N 17.983 -16.941 15.499 5.384 -2.020 0.730 C7 GZI 4
GZI C8 C5 C 0 1 N N N N N N 17.898 -18.700 17.193 7.250 -0.725 -0.107 C8 GZI 5
GZI C9 C6 C 0 1 N N N N N N 17.962 -20.206 17.333 7.747 0.696 -0.379 C9 GZI 6
GZI C10 C7 C 0 1 N N N N N N 16.616 -20.866 17.320 9.159 0.640 -0.965 C10 GZI 7
GZI C11 C8 C 0 1 N N R N N N 18.929 -11.234 11.327 -1.457 0.016 -0.802 C11 GZI 8
GZI C12 C9 C 0 1 Y N N N N N 20.040 -10.857 12.259 -1.809 1.427 -0.394 C12 GZI 9
GZI C13 C10 C 0 1 Y N N N N N 20.083 -9.731 13.021 -3.078 1.896 -0.379 C13 GZI 10
GZI C14 C11 C 0 1 Y N N N N N 21.317 -9.769 13.754 -3.020 3.271 0.064 C14 GZI 11
GZI C15 C12 C 0 1 Y N N N N N 21.929 -8.930 14.681 -4.001 4.246 0.271 C15 GZI 12
GZI C16 C13 C 0 1 Y N N N N N 23.161 -9.277 15.215 -3.573 5.476 0.706 C16 GZI 13
GZI C19 C14 C 0 1 Y N N N N N 21.974 -10.956 13.385 -1.647 3.549 0.295 C19 GZI 14
GZI C20 C15 C 0 1 N N N N N N 18.979 -8.722 12.998 -4.275 1.067 -0.770 C20 GZI 15
GZI C21 C16 C 0 1 N N R N N N 18.124 -8.927 11.750 -3.769 -0.169 -1.527 C21 GZI 16
GZI C22 C17 C 0 1 N N N N N N 16.754 -10.490 10.489 -2.422 -2.162 -1.247 C22 GZI 17
GZI C24 C18 C 0 1 N N N N N N 14.948 -10.574 12.228 -3.467 -4.377 -1.742 C24 GZI 18
GZI O1 O1 O 0 1 N N N N N N 13.851 -10.248 9.590 -5.094 -3.887 0.727 O1 GZI 19
GZI C25 C19 C 0 1 N N N N N N 14.468 -11.235 9.903 -4.016 -3.178 0.358 C25 GZI 20
GZI O2 O2 O 0 1 N N N N N N 14.300 -12.396 9.346 -3.305 -2.679 1.198 O2 GZI 21
GZI C23 C20 C 0 1 N N R N N N 15.517 -11.244 10.982 -3.691 -3.004 -1.103 C23 GZI 22
GZI N3 N1 N 0 1 N N N N N N 17.774 -10.351 11.563 -2.682 -0.799 -0.765 N3 GZI 23
GZI C26 C21 C 0 1 N N N N N N 18.770 -8.324 10.518 -3.250 0.252 -2.903 C26 GZI 24
GZI C18 C22 C 0 1 Y N N N N N 23.207 -11.307 13.918 -1.243 4.807 0.737 C18 GZI 25
GZI C17 C23 C 0 1 Y N N N N N 23.795 -10.451 14.836 -2.235 5.752 0.934 C17 GZI 26
GZI N2 N2 N 0 1 Y N N N N N 21.175 -11.614 12.464 -0.947 2.412 0.007 N2 GZI 27
GZI F1 F1 F 0 1 N N N N N N 18.647 -13.040 9.152 -2.096 -0.812 1.846 F1 GZI 28
GZI C4 C24 C 0 1 Y N N N N N 18.070 -14.859 10.515 0.144 -1.453 2.292 C4 GZI 29
GZI N N3 N 0 1 Y N N N N N 17.824 -15.416 11.702 1.398 -1.580 1.903 N GZI 30
GZI C5 C25 C 0 1 Y N N N N N 17.931 -14.638 12.763 1.789 -1.223 0.691 C5 GZI 31
GZI C C26 C 0 1 N N N N N N 18.381 -12.436 13.982 1.332 -0.298 -1.601 C GZI 32
GZI O O3 O 0 1 N N N N N N 17.695 -15.146 13.985 3.088 -1.377 0.332 O GZI 33
GZI C6 C27 C 0 1 N N N N N N 17.566 -16.568 14.108 3.973 -1.923 1.313 C6 GZI 34
GZI N1 N4 N 0 1 N N N N N N 17.517 -18.285 15.843 5.894 -0.670 0.455 N1 GZI 35
GZI F F2 F 0 1 N N N N N N 15.959 -20.603 18.509 9.613 1.939 -1.214 F GZI 36
GZI H1 H1 H 0 1 N N N N N N 19.081 -16.913 15.565 6.039 -2.518 1.445 H1 GZI 37
GZI H2 H2 H 0 1 N N N N N N 17.554 -16.219 16.209 5.355 -2.594 -0.197 H2 GZI 38
GZI H3 H3 H 0 1 N N N N N N 18.888 -18.280 17.426 7.235 -1.289 -1.039 H3 GZI 39
GZI H4 H4 H 0 1 N N N N N N 17.157 -18.309 17.906 7.918 -1.214 0.602 H4 GZI 40
GZI H5 H5 H 0 1 N N N N N N 18.555 -20.608 16.498 7.079 1.185 -1.089 H5 GZI 41
GZI H6 H6 H 0 1 N N N N N N 18.458 -20.446 18.285 7.762 1.261 0.553 H6 GZI 42
GZI H7 H7 H 0 1 N N N N N N 16.024 -20.474 16.480 9.827 0.151 -0.255 H7 GZI 43
GZI H8 H8 H 0 1 N N N N N N 16.742 -21.953 17.204 9.144 0.075 -1.897 H8 GZI 44
GZI H9 H9 H 0 1 N N N N N N 19.280 -11.080 10.296 -1.048 0.016 -1.812 H9 GZI 45
GZI H10 H10 H 0 1 N N N N N N 21.446 -8.012 14.983 -5.047 4.041 0.096 H10 GZI 46
GZI H11 H11 H 0 1 N N N N N N 23.633 -8.625 15.935 -4.303 6.253 0.877 H11 GZI 47
GZI H12 H12 H 0 1 N N N N N N 19.409 -7.709 12.985 -4.816 0.756 0.124 H12 GZI 48
GZI H13 H13 H 0 1 N N N N N N 18.353 -8.843 13.894 -4.933 1.651 -1.414 H13 GZI 49
GZI H14 H14 H 0 1 N N N N N N 17.185 -8.379 11.917 -4.587 -0.880 -1.649 H14 GZI 50
GZI H15 H15 H 0 1 N N N N N N 17.196 -11.041 9.646 -1.621 -2.609 -0.659 H15 GZI 51
GZI H16 H16 H 0 1 N N N N N N 16.451 -9.488 10.153 -2.127 -2.126 -2.296 H16 GZI 52
GZI H17 H17 H 0 1 N N N N N N 15.707 -10.575 13.024 -3.147 -4.248 -2.776 H17 GZI 53
GZI H18 H18 H 0 1 N N N N N N 14.667 -9.537 11.991 -2.699 -4.915 -1.188 H18 GZI 54
GZI H19 H19 H 0 1 N N N N N N 14.060 -11.126 12.568 -4.398 -4.944 -1.719 H19 GZI 55
GZI H20 H20 H 0 1 N N N N N N 13.244 -10.462 8.891 -5.261 -3.971 1.676 H20 GZI 56
GZI H21 H21 H 0 1 N N N N N N 15.794 -12.282 11.220 -4.520 -2.502 -1.602 H21 GZI 57
GZI H23 H23 H 0 1 N N N N N N 19.010 -7.268 10.709 -2.432 0.963 -2.780 H23 GZI 58
GZI H24 H24 H 0 1 N N N N N N 19.694 -8.873 10.283 -2.891 -0.625 -3.440 H24 GZI 59
GZI H25 H25 H 0 1 N N N N N N 18.075 -8.394 9.668 -4.056 0.720 -3.468 H25 GZI 60
GZI H26 H26 H 0 1 N N N N N N 23.696 -12.224 13.625 -0.203 5.034 0.918 H26 GZI 61
GZI H27 H27 H 0 1 N N N N N N 24.756 -10.701 15.260 -1.956 6.737 1.276 H27 GZI 62
GZI H28 H28 H 0 1 N N N N N N 21.385 -12.487 12.024 0.015 2.316 0.077 H28 GZI 63
GZI H29 H29 H 0 1 N N N N N N 17.992 -15.471 9.628 -0.139 -1.755 3.290 H29 GZI 64
GZI H30 H30 H 0 1 N N N N N N 17.404 -11.981 14.199 1.234 -1.148 -2.275 H30 GZI 65
GZI H31 H31 H 0 1 N N N N N N 18.681 -13.078 14.823 0.713 0.525 -1.961 H31 GZI 66
GZI H32 H32 H 0 1 N N N N N N 19.131 -11.644 13.840 2.374 0.020 -1.566 H32 GZI 67
GZI H33 H33 H 0 1 N N N N N N 16.521 -16.866 13.937 3.628 -2.917 1.599 H33 GZI 68
GZI H34 H34 H 0 1 N N N N N N 18.215 -17.069 13.375 3.986 -1.276 2.190 H34 GZI 69
GZI H35 H35 H 0 1 N N N N N N 16.519 -18.302 15.775 5.270 -0.165 -0.155 H35 GZI 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GZI F1 C3 SING N N 1
GZI O2 C25 DOUB N N 2
GZI O1 C25 SING N N 3
GZI C25 C23 SING N N 4
GZI C3 C4 DOUB Y N 5
GZI C3 C2 SING Y N 6
GZI C22 C23 SING N N 7
GZI C22 N3 SING N N 8
GZI C4 N SING Y N 9
GZI C26 C21 SING N N 10
GZI C23 C24 SING N N 11
GZI C11 C2 SING N N 12
GZI C11 N3 SING N N 13
GZI C11 C12 SING N N 14
GZI C2 C1 DOUB Y N 15
GZI N3 C21 SING N N 16
GZI N C5 DOUB Y N 17
GZI C21 C20 SING N N 18
GZI C12 N2 SING Y N 19
GZI C12 C13 DOUB Y N 20
GZI N2 C19 SING Y N 21
GZI C1 C5 SING Y N 22
GZI C1 C SING N N 23
GZI C5 O SING N N 24
GZI C20 C13 SING N N 25
GZI C13 C14 SING Y N 26
GZI C19 C14 DOUB Y N 27
GZI C19 C18 SING Y N 28
GZI C14 C15 SING Y N 29
GZI C18 C17 DOUB Y N 30
GZI O C6 SING N N 31
GZI C6 C7 SING N N 32
GZI C15 C16 DOUB Y N 33
GZI C17 C16 SING Y N 34
GZI C7 N1 SING N N 35
GZI N1 C8 SING N N 36
GZI C8 C9 SING N N 37
GZI C10 C9 SING N N 38
GZI C10 F SING N N 39
GZI C7 H1 SING N N 40
GZI C7 H2 SING N N 41
GZI C8 H3 SING N N 42
GZI C8 H4 SING N N 43
GZI C9 H5 SING N N 44
GZI C9 H6 SING N N 45
GZI C10 H7 SING N N 46
GZI C10 H8 SING N N 47
GZI C11 H9 SING N N 48
GZI C15 H10 SING N N 49
GZI C16 H11 SING N N 50
GZI C20 H12 SING N N 51
GZI C20 H13 SING N N 52
GZI C21 H14 SING N N 53
GZI C22 H15 SING N N 54
GZI C22 H16 SING N N 55
GZI C24 H17 SING N N 56
GZI C24 H18 SING N N 57
GZI C24 H19 SING N N 58
GZI O1 H20 SING N N 59
GZI C23 H21 SING N N 60
GZI C26 H23 SING N N 61
GZI C26 H24 SING N N 62
GZI C26 H25 SING N N 63
GZI C18 H26 SING N N 64
GZI C17 H27 SING N N 65
GZI N2 H28 SING N N 66
GZI C4 H29 SING N N 67
GZI C H30 SING N N 68
GZI C H31 SING N N 69
GZI C H32 SING N N 70
GZI C6 H33 SING N N 71
GZI C6 H34 SING N N 72
GZI N1 H35 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GZI InChI InChI 1.06 InChI=1S/C27H34F2N4O3/c1-16(27(34)35)15-33-17(2)13-20-19-7-4-5-8-22(19)32-24(20)25(33)23-18(3)26(31-14-21(23)29)36-12-11-30-10-6-9-28/h4-5,7-8,14,16-17,25,30,32H,6,9-13,15H2,1-3H3,(H,34,35)/t16-,17-,25-/m1/s1
GZI InChIKey InChI 1.06 JMHAEPDWKOSCPH-RYUVBPIJSA-N
GZI SMILES_CANONICAL CACTVS 3.385 C[C@@H]1Cc2c([nH]c3ccccc23)[C@H](N1C[C@@H](C)C(O)=O)c4c(C)c(OCCNCCCF)ncc4F
GZI SMILES CACTVS 3.385 C[CH]1Cc2c([nH]c3ccccc23)[CH](N1C[CH](C)C(O)=O)c4c(C)c(OCCNCCCF)ncc4F
GZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c(c(cnc1OCCNCCCF)F)[C@@H]2c3c(c4ccccc4[nH]3)C[C@H](N2C[C@@H](C)C(=O)O)C
GZI SMILES "OpenEye OEToolkits" 2.0.7 Cc1c(c(cnc1OCCNCCCF)F)C2c3c(c4ccccc4[nH]3)CC(N2CC(C)C(=O)O)C
#
_pdbx_chem_comp_identifier.comp_id GZI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{R})-3-[(1~{R},3~{R})-1-[5-fluoranyl-2-[2-(3-fluoranylpropylamino)ethoxy]-3-methyl-pyridin-4-yl]-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-2-yl]-2-methyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GZI 'Create component' 2022-02-04 PDBE
GZI 'Modify descriptor' 2022-08-22 RCSB
GZI 'Initial release' 2023-02-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GZI C1 C 11.438 -1.478 1
GZI C2 C 9.975 -1.807 2
GZI C3 C 8.958 -0.704 3
GZI C7 C 15.259 2.043 4
GZI C8 C 17.170 3.804 5
GZI C9 C 17.617 5.236 6
GZI C10 C 19.080 5.565 7
GZI C11 C 9.528 -3.239 8
GZI C12 C 8.005 -3.587 9
GZI C13 C 7.541 -5.014 10
GZI C14 C 6.041 -5.014 11
GZI C15 C 5.014 -6.191 12
GZI C16 C 3.483 -5.878 13
GZI C19 C 5.577 -3.587 14
GZI C20 C 8.569 -6.191 15
GZI C21 C 10.099 -5.878 16
GZI C22 C 12.048 -4.074 17
GZI C24 C 12.598 -6.614 18
GZI O1 O 14.980 -3.439 19
GZI C25 C 14.522 -4.868 20
GZI O2 O 15.530 -5.978 21
GZI C23 C 13.056 -5.185 22
GZI N3 N 10.582 -4.392 23
GZI C26 C 11.099 -6.996 24
GZI C18 C 4.054 -3.239 25
GZI C17 C 3.000 -4.392 26
GZI N2 N 6.791 -2.706 27
GZI F1 F 7.495 -1.033 28
GZI C4 C 9.405 0.728 29
GZI N N 10.869 1.057 30
GZI C5 C 11.885 -0.046 31
GZI C C 12.455 -2.581 32
GZI O O 13.349 0.283 33
GZI C6 C 13.796 1.714 34
GZI N1 N 15.706 3.475 35
GZI F F 19.527 6.996 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GZI F1 C3 SINGLE NONE 1
GZI O2 C25 DOUBLE NONE 2
GZI O1 C25 SINGLE NONE 3
GZI C25 C23 SINGLE NONE 4
GZI C3 C4 DOUBLE NONE 5
GZI C3 C2 SINGLE NONE 6
GZI C22 C23 SINGLE NONE 7
GZI C22 N3 SINGLE NONE 8
GZI C4 N SINGLE NONE 9
GZI C21 C26 SINGLE BEGINDASH 10
GZI C23 C24 SINGLE BEGINDASH 11
GZI C11 C2 SINGLE BEGINWEDGE 12
GZI C11 N3 SINGLE NONE 13
GZI C11 C12 SINGLE NONE 14
GZI C2 C1 DOUBLE NONE 15
GZI N3 C21 SINGLE NONE 16
GZI N C5 DOUBLE NONE 17
GZI C21 C20 SINGLE NONE 18
GZI C12 N2 SINGLE NONE 19
GZI C12 C13 DOUBLE NONE 20
GZI N2 C19 SINGLE NONE 21
GZI C1 C5 SINGLE NONE 22
GZI C1 C SINGLE NONE 23
GZI C5 O SINGLE NONE 24
GZI C20 C13 SINGLE NONE 25
GZI C13 C14 SINGLE NONE 26
GZI C19 C14 SINGLE NONE 27
GZI C19 C18 DOUBLE NONE 28
GZI C14 C15 DOUBLE NONE 29
GZI C18 C17 SINGLE NONE 30
GZI O C6 SINGLE NONE 31
GZI C6 C7 SINGLE NONE 32
GZI C15 C16 SINGLE NONE 33
GZI C17 C16 DOUBLE NONE 34
GZI C7 N1 SINGLE NONE 35
GZI N1 C8 SINGLE NONE 36
GZI C8 C9 SINGLE NONE 37
GZI C10 C9 SINGLE NONE 38
GZI C10 F SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GZI MurckoScaffold S1 scaffold 'c1ccc2c3c([nH]c2c1)[C@@H](c1ccncc1)NCC3' InChI=1S/C16H15N3/c1-2-4-14-12(3-1)13-7-10-18-15(16(13)19-14)11-5-8-17-9-6-11/h1-6,8-9,15,18-19H,7,10H2/t15-/m1/s1 MTYAQGYHCVXXRK-OAHLLOKOSA-N
GZI indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
GZI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GZI pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
GZI pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GZI C1 S1 1
GZI C2 S1 1
GZI C3 S1 1
GZI C11 S1 1
GZI C12 S1 1
GZI C13 S1 1
GZI C14 S1 1
GZI C15 S1 1
GZI C16 S1 1
GZI C19 S1 1
GZI C20 S1 1
GZI C21 S1 1
GZI N3 S1 1
GZI C18 S1 1
GZI C17 S1 1
GZI N2 S1 1
GZI C4 S1 1
GZI N S1 1
GZI C5 S1 1
GZI C19 F1 1
GZI C14 F1 1
GZI C13 F1 1
GZI C12 F1 1
GZI N2 F1 1
GZI C15 F1 1
GZI C16 F1 1
GZI C17 F1 1
GZI C18 F1 1
GZI C14 F2 1
GZI C19 F2 1
GZI C18 F2 1
GZI C17 F2 1
GZI C16 F2 1
GZI C15 F2 1
GZI C4 F3 1
GZI C3 F3 1
GZI C2 F3 1
GZI C1 F3 1
GZI C5 F3 1
GZI N F3 1
GZI C12 F4 1
GZI C13 F4 1
GZI C14 F4 1
GZI C19 F4 1
GZI N2 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GZI
_pdbe_chem_comp_rdkit_properties.exactmw 500.260
_pdbe_chem_comp_rdkit_properties.amw 500.590
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.481
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 257.384
_pdbe_chem_comp_rdkit_properties.tpsa 90.480
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.285
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.822
_pdbe_chem_comp_rdkit_properties.chi0v 17.270
_pdbe_chem_comp_rdkit_properties.chi1v 9.207
_pdbe_chem_comp_rdkit_properties.chi2v 4.305
_pdbe_chem_comp_rdkit_properties.chi3v 4.305
_pdbe_chem_comp_rdkit_properties.chi4v 2.937
_pdbe_chem_comp_rdkit_properties.chi0n 51.270
_pdbe_chem_comp_rdkit_properties.chi1n 26.010
_pdbe_chem_comp_rdkit_properties.chi2n 4.305
_pdbe_chem_comp_rdkit_properties.chi3n 4.305
_pdbe_chem_comp_rdkit_properties.chi4n 2.937
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.040
_pdbe_chem_comp_rdkit_properties.kappa1 6.879
_pdbe_chem_comp_rdkit_properties.kappa2 11.347
_pdbe_chem_comp_rdkit_properties.kappa3 5.221
_pdbe_chem_comp_rdkit_properties.Phi 2.168
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GZI UniChem SureChEMBL SCHEMBL20518109
GZI UniChem PubChem 135343717
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GZI C1 0.418 0.906 -0.618 ETKDGv3 1
GZI C2 -0.406 0.714 -1.690 ETKDGv3 2
GZI C3 0.177 0.801 -3.059 ETKDGv3 3
GZI C7 4.692 -0.004 -0.185 ETKDGv3 4
GZI C8 4.928 -1.141 1.974 ETKDGv3 5
GZI C9 6.095 -2.128 1.788 ETKDGv3 6
GZI C10 6.928 -2.256 3.063 ETKDGv3 7
GZI C11 -1.896 0.398 -1.568 ETKDGv3 8
GZI C12 -2.586 1.478 -0.763 ETKDGv3 9
GZI C13 -3.457 1.211 0.216 ETKDGv3 10
GZI C14 -3.903 2.477 0.781 ETKDGv3 11
GZI C15 -4.729 2.773 1.785 ETKDGv3 12
GZI C16 -4.944 4.214 2.091 ETKDGv3 13
GZI C19 -3.230 3.493 0.011 ETKDGv3 14
GZI C20 -3.812 -0.176 0.650 ETKDGv3 15
GZI C21 -3.520 -1.163 -0.497 ETKDGv3 16
GZI C22 -1.650 -2.068 -1.860 ETKDGv3 17
GZI C24 0.666 -2.445 -0.813 ETKDGv3 18
GZI O1 -1.316 -2.918 1.307 ETKDGv3 19
GZI C25 -1.340 -3.626 0.108 ETKDGv3 20
GZI O2 -1.935 -4.735 0.049 ETKDGv3 21
GZI C23 -0.706 -3.051 -1.129 ETKDGv3 22
GZI N3 -2.120 -0.960 -0.982 ETKDGv3 23
GZI C26 -4.595 -1.023 -1.606 ETKDGv3 24
GZI C18 -3.395 4.794 0.259 ETKDGv3 25
GZI C17 -4.314 5.169 1.369 ETKDGv3 26
GZI N2 -2.407 2.887 -0.973 ETKDGv3 27
GZI F1 -0.596 0.623 -4.160 ETKDGv3 28
GZI C4 1.476 1.055 -3.219 ETKDGv3 29
GZI N 2.319 1.248 -2.078 ETKDGv3 30
GZI C5 1.860 1.187 -0.861 ETKDGv3 31
GZI C -0.071 0.878 0.812 ETKDGv3 32
GZI O 2.723 1.374 0.226 ETKDGv3 33
GZI C6 4.146 1.395 0.119 ETKDGv3 34
GZI N1 4.128 -0.993 0.747 ETKDGv3 35
GZI F 6.164 -2.787 4.087 ETKDGv3 36
GZI H1 4.406 -0.277 -1.225 ETKDGv3 37
GZI H2 5.803 0.014 -0.152 ETKDGv3 38
GZI H3 5.312 -0.155 2.319 ETKDGv3 39
GZI H4 4.260 -1.525 2.775 ETKDGv3 40
GZI H5 5.699 -3.130 1.515 ETKDGv3 41
GZI H6 6.758 -1.783 0.967 ETKDGv3 42
GZI H7 7.319 -1.263 3.370 ETKDGv3 43
GZI H8 7.789 -2.931 2.874 ETKDGv3 44
GZI H9 -2.367 0.431 -2.574 ETKDGv3 45
GZI H10 -5.223 1.998 2.357 ETKDGv3 46
GZI H11 -5.609 4.496 2.897 ETKDGv3 47
GZI H12 -3.196 -0.442 1.536 ETKDGv3 48
GZI H13 -4.882 -0.221 0.947 ETKDGv3 49
GZI H14 -3.621 -2.185 -0.073 ETKDGv3 50
GZI H15 -2.493 -2.669 -2.257 ETKDGv3 51
GZI H16 -1.127 -1.686 -2.763 ETKDGv3 52
GZI H17 0.596 -1.704 0.005 ETKDGv3 53
GZI H18 1.363 -3.245 -0.487 ETKDGv3 54
GZI H19 1.096 -1.960 -1.715 ETKDGv3 55
GZI H20 -1.763 -3.287 2.138 ETKDGv3 56
GZI H21 -0.516 -3.892 -1.834 ETKDGv3 57
GZI H23 -4.430 -1.727 -2.443 ETKDGv3 58
GZI H24 -4.634 0.006 -2.017 ETKDGv3 59
GZI H25 -5.596 -1.253 -1.181 ETKDGv3 60
GZI H26 -2.880 5.547 -0.322 ETKDGv3 61
GZI H27 -4.475 6.215 1.599 ETKDGv3 62
GZI H28 -1.785 3.357 -1.667 ETKDGv3 63
GZI H29 1.901 1.117 -4.212 ETKDGv3 64
GZI H30 -0.503 1.864 1.080 ETKDGv3 65
GZI H31 0.757 0.659 1.517 ETKDGv3 66
GZI H32 -0.823 0.083 0.972 ETKDGv3 67
GZI H33 4.567 1.754 1.081 ETKDGv3 68
GZI H34 4.462 2.110 -0.673 ETKDGv3 69
GZI H35 4.046 -1.917 0.263 ETKDGv3 70
#