data_GUA
#
_chem_comp.id GUA
_chem_comp.name 'GLUTARIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C5 H8 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 132.115
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GUA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CZC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GUA C1 C1 C 0 1 N N N N N N 24.703 10.153 -10.853 0.037 0.000 2.479 C1 GUA 1
GUA C2 C2 C 0 1 N N N N N N 23.297 9.996 -11.350 -0.832 0.000 1.249 C2 GUA 2
GUA C3 C3 C 0 1 N N N N N N 22.961 10.842 -12.517 0.050 0.000 0.000 C3 GUA 3
GUA C4 C4 C 0 1 N N N N N N 23.699 10.233 -13.705 -0.832 0.000 -1.249 C4 GUA 4
GUA C5 C5 C 0 1 N N N N N N 24.359 11.286 -14.533 0.037 0.000 -2.479 C5 GUA 5
GUA O1 O1 O 0 1 N N N N N N 25.506 10.949 -11.404 1.240 0.000 2.368 O1 GUA 6
GUA O2 O2 O 0 1 N N N N N N 25.004 9.450 -9.884 -0.524 0.000 3.698 O2 GUA 7
GUA O3 O3 O 0 1 N N N N N N 23.852 12.408 -14.519 1.240 0.000 -2.368 O3 GUA 8
GUA O4 O4 O 0 1 N N N N N N 25.379 11.016 -15.206 -0.523 0.000 -3.698 O4 GUA 9
GUA H21 1H2 H 0 1 N N N N N N 23.080 8.924 -11.571 -1.461 -0.890 1.249 H21 GUA 10
GUA H22 2H2 H 0 1 N N N N N N 22.570 10.170 -10.522 -1.461 0.890 1.249 H22 GUA 11
GUA H31 1H3 H 0 1 N N N N N N 21.864 10.953 -12.684 0.680 0.890 0.000 H31 GUA 12
GUA H32 2H3 H 0 1 N N N N N N 23.184 11.923 -12.361 0.680 -0.890 0.000 H32 GUA 13
GUA H41 1H4 H 0 1 N N N N N N 24.426 9.453 -13.378 -1.461 -0.890 -1.249 H41 GUA 14
GUA H42 2H4 H 0 1 N N N N N N 23.025 9.591 -14.320 -1.461 0.890 -1.249 H42 GUA 15
GUA HO2 HO2 H 0 1 N N N N N N 25.894 9.549 -9.569 0.034 0.000 4.488 HO2 GUA 16
GUA HO4 HO4 H 0 1 N N N N N N 25.798 11.685 -15.732 0.034 0.000 -4.488 HO4 GUA 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GUA C1 C2 SING N N 1
GUA C1 O1 DOUB N N 2
GUA C1 O2 SING N N 3
GUA C2 C3 SING N N 4
GUA C2 H21 SING N N 5
GUA C2 H22 SING N N 6
GUA C3 C4 SING N N 7
GUA C3 H31 SING N N 8
GUA C3 H32 SING N N 9
GUA C4 C5 SING N N 10
GUA C4 H41 SING N N 11
GUA C4 H42 SING N N 12
GUA C5 O3 DOUB N N 13
GUA C5 O4 SING N N 14
GUA O2 HO2 SING N N 15
GUA O4 HO4 SING N N 16
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GUA SMILES ACDLabs 10.04 'O=C(O)CCCC(=O)O'
GUA SMILES_CANONICAL CACTVS 3.341 'OC(=O)CCCC(O)=O'
GUA SMILES CACTVS 3.341 'OC(=O)CCCC(O)=O'
GUA SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C(CC(=O)O)CC(=O)O'
GUA SMILES 'OpenEye OEToolkits' 1.5.0 'C(CC(=O)O)CC(=O)O'
GUA InChI InChI 1.03 'InChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9)'
GUA InChIKey InChI 1.03 JFCQEDHGNNZCLN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GUA 'SYSTEMATIC NAME' ACDLabs 10.04 'pentanedioic acid'
GUA 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 'pentanedioic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GUA 'Create component' 1999-07-08 RCSB
GUA 'Modify descriptor' 2011-06-04 RCSB
GUA 'Modify PCM' 2024-09-27 PDBE
#
_pdbe_chem_comp_drugbank_details.comp_id GUA
_pdbe_chem_comp_drugbank_details.drugbank_id DB03553
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Glutaric Acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 110-94-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id GUA
_pdbe_chem_comp_synonyms.name 'Glutaric Acid'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id GUA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03553
_pdbe_chem_comp_drugbank_classification.parent 'Dicarboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
GUA DB03553 'Organic anion transporter 3' Humans Q8TCC7 unknown 1
GUA DB03553 'Aspartate aminotransferase' 'Escherichia coli (strain K12)' P00509 unknown 2
GUA DB03553 'Branched-chain-amino-acid aminotransferase' 'Escherichia coli (strain K12)' P0AB80 unknown 3
GUA DB03553 'Glutamate decarboxylase alpha' 'Escherichia coli (strain K12)' P69908 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GUA C1 C -2.598 0.005 1
GUA C2 C -1.300 -0.747 2
GUA C3 C 0.000 -0.000 3
GUA C4 C 1.298 -0.753 4
GUA C5 C 2.598 -0.005 5
GUA O1 O -2.595 1.505 6
GUA O2 O -3.898 -0.742 7
GUA O3 O 2.601 1.495 8
GUA O4 O 3.895 -0.758 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GUA C1 C2 SINGLE NONE 1
GUA C1 O1 DOUBLE NONE 2
GUA C1 O2 SINGLE NONE 3
GUA C2 C3 SINGLE NONE 4
GUA C3 C4 SINGLE NONE 5
GUA C4 C5 SINGLE NONE 6
GUA C5 O3 DOUBLE NONE 7
GUA C5 O4 SINGLE NONE 8
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id GUA
_pdbe_chem_comp_rdkit_properties.exactmw 132.042
_pdbe_chem_comp_rdkit_properties.amw 132.115
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 63.524
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.326
_pdbe_chem_comp_rdkit_properties.CrippenMR 29.123
_pdbe_chem_comp_rdkit_properties.chi0v 4.133
_pdbe_chem_comp_rdkit_properties.chi1v 1.816
_pdbe_chem_comp_rdkit_properties.chi2v 0.329
_pdbe_chem_comp_rdkit_properties.chi3v 0.329
_pdbe_chem_comp_rdkit_properties.chi4v 0.133
_pdbe_chem_comp_rdkit_properties.chi0n 12.133
_pdbe_chem_comp_rdkit_properties.chi1n 5.633
_pdbe_chem_comp_rdkit_properties.chi2n 0.329
_pdbe_chem_comp_rdkit_properties.chi3n 0.329
_pdbe_chem_comp_rdkit_properties.chi4n 0.133
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 1.713
_pdbe_chem_comp_rdkit_properties.kappa2 3.884
_pdbe_chem_comp_rdkit_properties.kappa3 6.940
_pdbe_chem_comp_rdkit_properties.Phi 0.739
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GUA UniChem DrugBank DB03553
GUA UniChem 'KEGG LIGAND' C00489
GUA UniChem ChEBI 17859
GUA UniChem ZINC ZINC000000388706
GUA UniChem eMolecules 515060
GUA UniChem fdasrs H849F7N00B
GUA UniChem SureChEMBL SCHEMBL7414
GUA UniChem HMDB HMDB0000661
GUA UniChem NMRShiftDB 10016798
GUA UniChem ACTor 110-94-1
GUA UniChem ACTor 68937-69-9
GUA UniChem Nikkaji J40.077G
GUA UniChem BindingDb 50485550
GUA UniChem 'EPA CompTox Dashboard' DTXSID2021654
GUA UniChem MetaboLights MTBLC17859
GUA UniChem BRENDA 107010
GUA UniChem BRENDA 109405
GUA UniChem BRENDA 3471
GUA UniChem BRENDA 51734
GUA UniChem BRENDA 545
GUA UniChem BRENDA 94669
GUA UniChem ChemicalBook CB7852828
GUA UniChem rxnorm 'GLUTARIC ACID'
GUA UniChem MedChemExpress HY-W008820
GUA UniChem 'Probes And Drugs' PD006818
GUA UniChem CCDC GLURAC
GUA UniChem 'PubChem TPHARMA' 15213255
GUA UniChem PubChem 23322899
GUA UniChem PubChem 743
GUA UniChem Mcule MCULE-4286022994
GUA UniChem ACTor 68603-87-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GUA C1 -1.751 -0.004 -0.896 ETKDGv3 1
GUA C2 -1.241 -0.009 0.512 ETKDGv3 2
GUA C3 -0.131 1.034 0.722 ETKDGv3 3
GUA C4 1.148 0.742 -0.078 ETKDGv3 4
GUA C5 1.818 -0.517 0.380 ETKDGv3 5
GUA O1 -2.550 0.894 -1.276 ETKDGv3 6
GUA O2 -1.319 -0.976 -1.793 ETKDGv3 7
GUA O3 2.502 -0.520 1.438 ETKDGv3 8
GUA O4 1.658 -1.692 -0.349 ETKDGv3 9
GUA H21 -0.875 -1.023 0.777 ETKDGv3 10
GUA H22 -2.085 0.224 1.198 ETKDGv3 11
GUA H31 0.118 1.079 1.805 ETKDGv3 12
GUA H32 -0.514 2.037 0.434 ETKDGv3 13
GUA H41 1.854 1.590 0.055 ETKDGv3 14
GUA H42 0.919 0.674 -1.163 ETKDGv3 15
GUA HO2 -1.644 -0.978 -2.753 ETKDGv3 16
GUA HO4 2.093 -2.554 -0.045 ETKDGv3 17
#