data_GM6
#
_chem_comp.id GM6
_chem_comp.name 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H28 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms GM6001
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-03
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 388.461
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GM6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GM6 OAG OAG O 0 1 N N N N N N 105.709 -1.251 117.301 -5.806 -0.752 1.567 OAG GM6 1
GM6 NAF NAF N 0 1 N N N N N N 104.515 -0.693 116.964 -4.637 -0.023 1.894 NAF GM6 2
GM6 CAD CAD C 0 1 N N N N N N 104.048 0.362 117.629 -3.563 -0.071 1.081 CAD GM6 3
GM6 OAE OAE O 0 1 N N N N N N 104.625 0.894 118.574 -3.598 -0.740 0.070 OAE GM6 4
GM6 CAC CAC C 0 1 N N N N N N 102.691 0.881 117.144 -2.319 0.705 1.429 CAC GM6 5
GM6 CAB CAB C 0 1 N N R N N N 102.604 2.409 117.188 -1.407 0.781 0.203 CAB GM6 6
GM6 CAK CAK C 0 1 N N N N N N 101.148 2.837 116.976 0.000 1.094 0.643 CAK GM6 7
GM6 OAL OAL O 0 1 N N N N N N 100.582 2.661 115.900 0.201 1.569 1.741 OAL GM6 8
GM6 NAM NAM N 0 1 N N N N N N 100.583 3.406 118.039 1.036 0.847 -0.183 NAM GM6 9
GM6 CAN CAN C 0 1 N N S N N N 99.191 3.882 118.082 2.410 1.055 0.281 CAN GM6 10
GM6 CAY CAY C 0 1 N N N N N N 98.928 4.946 117.015 2.857 2.448 -0.083 CAY GM6 11
GM6 OAZ OAZ O 0 1 N N N N N N 99.641 5.946 116.928 2.401 2.994 -1.066 OAZ GM6 12
GM6 NBB NBB N 0 1 N N N N N N 97.893 4.698 116.218 3.763 3.086 0.683 NBB GM6 13
GM6 CBA CBA C 0 1 N N N N N N 96.680 5.506 116.415 4.198 4.440 0.329 CBA GM6 14
GM6 CAO CAO C 0 1 N N N N N N 98.915 4.471 119.468 3.333 0.033 -0.384 CAO GM6 15
GM6 CAP CAP C 0 1 Y N N N N N 99.134 3.418 120.559 2.963 -1.353 0.077 CAP GM6 16
GM6 CAT CAT C 0 1 Y N N N N N 100.236 3.208 121.274 3.523 -2.035 1.088 CAT GM6 17
GM6 NAU NAU N 0 1 Y N N N N N 100.067 2.177 122.105 2.927 -3.260 1.212 NAU GM6 18
GM6 CAR CAR C 0 1 Y N N N N N 98.842 1.669 121.972 1.943 -3.401 0.260 CAR GM6 19
GM6 CAV CAV C 0 1 Y N N N N N 98.160 0.619 122.574 1.051 -4.421 -0.053 CAV GM6 20
GM6 CAX CAX C 0 1 Y N N N N N 96.849 0.349 122.194 0.161 -4.258 -1.092 CAX GM6 21
GM6 CAW CAW C 0 1 Y N N N N N 96.234 1.129 121.218 0.145 -3.084 -1.832 CAW GM6 22
GM6 CAS CAS C 0 1 Y N N N N N 96.928 2.177 120.621 1.012 -2.069 -1.542 CAS GM6 23
GM6 CAQ CAQ C 0 1 Y N N N N N 98.239 2.454 120.994 1.918 -2.210 -0.490 CAQ GM6 24
GM6 CAA CAA C 0 1 N N N N N N 103.527 3.022 116.131 -1.904 1.882 -0.736 CAA GM6 25
GM6 CAH CAH C 0 1 N N N N N N 103.855 4.485 116.446 -3.256 1.477 -1.327 CAH GM6 26
GM6 CAJ CAJ C 0 1 N N N N N N 102.638 5.397 116.278 -3.817 2.633 -2.157 CAJ GM6 27
GM6 CAI CAI C 0 1 N N N N N N 104.989 4.977 115.544 -3.074 0.248 -2.220 CAI GM6 28
GM6 HAG HAG H 0 1 N N N N N N 106.042 -2.004 116.827 -6.447 -0.582 2.271 HAG GM6 29
GM6 HAF HAF H 0 1 N N N N N N 103.959 -1.073 116.198 -4.609 0.512 2.703 HAF GM6 30
GM6 HAC1 1HAC H 0 0 N N N N N N 101.854 0.414 117.714 -1.794 0.205 2.242 HAC1 GM6 31
GM6 HAC2 2HAC H 0 0 N N N N N N 102.452 0.493 116.126 -2.595 1.713 1.740 HAC2 GM6 32
GM6 HAB HAB H 0 1 N N N N N N 102.942 2.779 118.184 -1.420 -0.175 -0.320 HAB GM6 33
GM6 HAM HAM H 0 1 N N N N N N 101.224 3.478 118.829 0.871 0.530 -1.086 HAM GM6 34
GM6 HAN HAN H 0 1 N N N N N N 98.515 3.019 117.879 2.450 0.932 1.363 HAN GM6 35
GM6 HBB HBB H 0 1 N N N N N N 98.017 3.961 115.524 4.128 2.649 1.468 HBB GM6 36
GM6 HBA1 1HBA H 0 0 N N N N N N 96.943 6.588 116.354 4.928 4.789 1.059 HBA1 GM6 37
GM6 HBA2 2HBA H 0 0 N N N N N N 95.812 5.298 115.747 4.652 4.428 -0.662 HBA2 GM6 38
GM6 HBA3 3HBA H 0 0 N N N N N N 96.354 5.430 117.479 3.338 5.109 0.327 HBA3 GM6 39
GM6 HAO1 1HAO H 0 0 N N N N N N 97.898 4.923 119.529 3.226 0.096 -1.467 HAO1 GM6 40
GM6 HAO2 2HAO H 0 0 N N N N N N 99.519 5.390 119.654 4.367 0.243 -0.109 HAO2 GM6 41
GM6 HAT HAT H 0 1 N N N N N N 101.160 3.805 121.190 4.327 -1.670 1.711 HAT GM6 42
GM6 HAU HAU H 0 1 N N N N N N 100.775 1.827 122.751 3.163 -3.930 1.873 HAU GM6 43
GM6 HAV HAV H 0 1 N N N N N N 98.655 0.006 123.346 1.057 -5.339 0.517 HAV GM6 44
GM6 HAX HAX H 0 1 N N N N N N 96.298 -0.482 122.666 -0.530 -5.052 -1.333 HAX GM6 45
GM6 HAW HAW H 0 1 N N N N N N 95.194 0.916 120.917 -0.559 -2.972 -2.643 HAW GM6 46
GM6 HAS HAS H 0 1 N N N N N N 96.436 2.791 119.848 0.994 -1.158 -2.123 HAS GM6 47
GM6 HAA1 1HAA H 0 0 N N N N N N 103.101 2.912 115.106 -2.016 2.812 -0.178 HAA1 GM6 48
GM6 HAA2 2HAA H 0 0 N N N N N N 104.454 2.416 116.000 -1.184 2.026 -1.541 HAA2 GM6 49
GM6 HAH HAH H 0 1 N N N N N N 104.172 4.529 117.514 -3.949 1.240 -0.519 HAH GM6 50
GM6 HAJ1 1HAJ H 0 0 N N N N N N 101.776 5.036 116.886 -3.124 2.870 -2.965 HAJ1 GM6 51
GM6 HAJ2 2HAJ H 0 0 N N N N N N 102.877 6.462 116.507 -4.780 2.343 -2.579 HAJ2 GM6 52
GM6 HAJ3 3HAJ H 0 0 N N N N N N 102.193 5.293 115.261 -3.946 3.508 -1.521 HAJ3 GM6 53
GM6 HAI1 1HAI H 0 0 N N N N N N 104.758 4.825 114.464 -2.356 0.475 -3.008 HAI1 GM6 54
GM6 HAI2 2HAI H 0 0 N N N N N N 105.228 6.042 115.773 -2.705 -0.585 -1.621 HAI2 GM6 55
GM6 HAI3 3HAI H 0 0 N N N N N N 105.890 4.324 115.613 -4.031 -0.022 -2.666 HAI3 GM6 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GM6 OAG NAF SING N N 1
GM6 OAG HAG SING N N 2
GM6 NAF CAD SING N N 3
GM6 NAF HAF SING N N 4
GM6 CAD OAE DOUB N N 5
GM6 CAD CAC SING N N 6
GM6 CAC CAB SING N N 7
GM6 CAC HAC1 SING N N 8
GM6 CAC HAC2 SING N N 9
GM6 CAB CAK SING N N 10
GM6 CAB CAA SING N N 11
GM6 CAB HAB SING N N 12
GM6 CAK OAL DOUB N N 13
GM6 CAK NAM SING N N 14
GM6 NAM CAN SING N N 15
GM6 NAM HAM SING N N 16
GM6 CAN CAY SING N N 17
GM6 CAN CAO SING N N 18
GM6 CAN HAN SING N N 19
GM6 CAY OAZ DOUB N N 20
GM6 CAY NBB SING N N 21
GM6 NBB CBA SING N N 22
GM6 NBB HBB SING N N 23
GM6 CBA HBA1 SING N N 24
GM6 CBA HBA2 SING N N 25
GM6 CBA HBA3 SING N N 26
GM6 CAO CAP SING N N 27
GM6 CAO HAO1 SING N N 28
GM6 CAO HAO2 SING N N 29
GM6 CAP CAT DOUB Y N 30
GM6 CAP CAQ SING Y N 31
GM6 CAT NAU SING Y N 32
GM6 CAT HAT SING N N 33
GM6 NAU CAR SING Y N 34
GM6 NAU HAU SING N N 35
GM6 CAR CAV DOUB Y N 36
GM6 CAR CAQ SING Y N 37
GM6 CAV CAX SING Y N 38
GM6 CAV HAV SING N N 39
GM6 CAX CAW DOUB Y N 40
GM6 CAX HAX SING N N 41
GM6 CAW CAS SING Y N 42
GM6 CAW HAW SING N N 43
GM6 CAS CAQ DOUB Y N 44
GM6 CAS HAS SING N N 45
GM6 CAA CAH SING N N 46
GM6 CAA HAA1 SING N N 47
GM6 CAA HAA2 SING N N 48
GM6 CAH CAJ SING N N 49
GM6 CAH CAI SING N N 50
GM6 CAH HAH SING N N 51
GM6 CAJ HAJ1 SING N N 52
GM6 CAJ HAJ2 SING N N 53
GM6 CAJ HAJ3 SING N N 54
GM6 CAI HAI1 SING N N 55
GM6 CAI HAI2 SING N N 56
GM6 CAI HAI3 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GM6 SMILES ACDLabs 10.04 O=C(NO)CC(C(=O)NC(C(=O)NC)Cc2c1ccccc1nc2)CC(C)C
GM6 SMILES_CANONICAL CACTVS 3.341 CNC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CC(C)C)CC(=O)NO
GM6 SMILES CACTVS 3.341 CNC(=O)[CH](Cc1c[nH]c2ccccc12)NC(=O)[CH](CC(C)C)CC(=O)NO
GM6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(C)C[C@H](CC(=O)NO)C(=O)N[C@@H](Cc1c[nH]c2c1cccc2)C(=O)NC
GM6 SMILES "OpenEye OEToolkits" 1.5.0 CC(C)CC(CC(=O)NO)C(=O)NC(Cc1c[nH]c2c1cccc2)C(=O)NC
GM6 InChI InChI 1.03 InChI=1S/C20H28N4O4/c1-12(2)8-13(10-18(25)24-28)19(26)23-17(20(27)21-3)9-14-11-22-16-7-5-4-6-15(14)16/h4-7,11-13,17,22,28H,8-10H2,1-3H3,(H,21,27)(H,23,26)(H,24,25)/t13-,17+/m1/s1
GM6 InChIKey InChI 1.03 NITYDPDXAAFEIT-DYVFJYSZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GM6 "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-N~4~-hydroxy-N~1~-[(1S)-1-(1H-indol-3-ylmethyl)-2-(methylamino)-2-oxoethyl]-2-(2-methylpropyl)butanediamide
GM6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-N'-hydroxy-N-[(2S)-3-(1H-indol-3-yl)-1-methylamino-1-oxo-propan-2-yl]-2-(2-methylpropyl)butanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GM6 'Create component' 2003-07-03 RCSB
GM6 'Modify descriptor' 2011-06-04 RCSB
GM6 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id GM6
_pdbx_chem_comp_synonyms.name GM6001
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id GM6
_pdbe_chem_comp_drugbank_details.drugbank_id DB02255
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Ilomastat
_pdbe_chem_comp_drugbank_details.description 'Ilomastat is a broad-spectrum matrix metalloproteinase inhibitor.'
_pdbe_chem_comp_drugbank_details.cas_number 142880-36-2
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
GM6 GM6001 wwPDB ?
GM6 '(R)-N(SUP 1)-HYDROXY-N-((S)-2-INDOL-3-YL-1-(METHYLCARBAMOYL)ETHYL)-2-ISOBUTYLSUCCINAMIDE' DrugBank ?
GM6 '(S-(R*,S*))-N(SUP 4)-HYDROXY-N(SUP 1)-(1H-INDOL-3-YLMETHYL)-2-(METHYLAMINO)-2-OXOETHYL)-2-(2-METHYLOPROPYL)BUTANEDIAMIDE' DrugBank ?
GM6 Ilomastat DrugBank ?
GM6 Galardin DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id GM6
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02255
_pdbe_chem_comp_drugbank_classification.parent 'N-acyl-alpha amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. These are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
GM6 DB02255 'Lethal factor' 'Bacillus anthracis' P15917 yes 1
GM6 DB02255 'Collagenase 3' Humans P45452 unknown 2
GM6 DB02255 'Macrophage metalloelastase' Humans P39900 unknown 3
GM6 DB02255 'Matrix metalloproteinase-9' Humans P14780 unknown 4
GM6 DB02255 Stromelysin-1 Humans P08254 unknown 5
GM6 DB02255 '72 kDa type IV collagenase' Humans P08253 unknown 6
GM6 DB02255 'Neutrophil collagenase' Humans P22894 unknown 7
GM6 DB02255 'Matrix metalloproteinase-14' Humans P50281 unknown 8
GM6 DB02255 'Interstitial collagenase' Humans P03956 unknown 9
GM6 DB02255 'Disintegrin and metalloproteinase domain-containing protein 28' Humans Q9UKQ2 unknown 10
GM6 DB02255 'Aggrecan core protein' Humans P16112 unknown 11
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GM6 OAG O 3.942 4.689 1
GM6 NAF N 5.410 4.998 2
GM6 CAD C 6.412 3.882 3
GM6 OAE O 5.946 2.456 4
GM6 CAC C 7.880 4.191 5
GM6 CAB C 8.881 3.075 6
GM6 CAK C 8.415 1.649 7
GM6 OAL O 6.948 1.340 8
GM6 NAM N 9.417 0.533 9
GM6 CAN C 8.951 -0.893 10
GM6 CAY C 9.953 -2.010 11
GM6 OAZ O 9.487 -3.435 12
GM6 NBB N 11.421 -1.700 13
GM6 CBA C 12.422 -2.817 14
GM6 CAO C 7.483 -1.202 15
GM6 CAP C 7.018 -2.628 16
GM6 CAT C 7.893 -3.835 17
GM6 NAU N 7.018 -5.042 18
GM6 CAR C 5.598 -4.585 19
GM6 CAV C 4.299 -5.335 20
GM6 CAX C 3.000 -4.585 21
GM6 CAW C 3.000 -3.085 22
GM6 CAS C 4.299 -2.335 23
GM6 CAQ C 5.598 -3.085 24
GM6 CAA C 10.349 3.384 25
GM6 CAH C 10.815 4.810 26
GM6 CAJ C 12.283 5.119 27
GM6 CAI C 9.813 5.926 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GM6 OAG NAF SINGLE NONE 1
GM6 NAF CAD SINGLE NONE 2
GM6 CAD OAE DOUBLE NONE 3
GM6 CAD CAC SINGLE NONE 4
GM6 CAB CAC SINGLE BEGINWEDGE 5
GM6 CAB CAK SINGLE NONE 6
GM6 CAB CAA SINGLE NONE 7
GM6 CAK OAL DOUBLE NONE 8
GM6 CAK NAM SINGLE NONE 9
GM6 NAM CAN SINGLE NONE 10
GM6 CAN CAY SINGLE NONE 11
GM6 CAN CAO SINGLE BEGINDASH 12
GM6 CAY OAZ DOUBLE NONE 13
GM6 CAY NBB SINGLE NONE 14
GM6 NBB CBA SINGLE NONE 15
GM6 CAO CAP SINGLE NONE 16
GM6 CAP CAT DOUBLE NONE 17
GM6 CAP CAQ SINGLE NONE 18
GM6 CAT NAU SINGLE NONE 19
GM6 NAU CAR SINGLE NONE 20
GM6 CAR CAV SINGLE NONE 21
GM6 CAR CAQ DOUBLE NONE 22
GM6 CAV CAX DOUBLE NONE 23
GM6 CAX CAW SINGLE NONE 24
GM6 CAW CAS DOUBLE NONE 25
GM6 CAS CAQ SINGLE NONE 26
GM6 CAA CAH SINGLE NONE 27
GM6 CAH CAJ SINGLE NONE 28
GM6 CAH CAI SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GM6 MurckoScaffold S1 scaffold 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
GM6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GM6 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
GM6 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
GM6 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GM6 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GM6 CAP S1 1
GM6 CAT S1 1
GM6 NAU S1 1
GM6 CAR S1 1
GM6 CAV S1 1
GM6 CAX S1 1
GM6 CAW S1 1
GM6 CAS S1 1
GM6 CAQ S1 1
GM6 NAF F1 1
GM6 CAD F1 1
GM6 OAE F1 1
GM6 CAC F1 1
GM6 NAM F1 2
GM6 CAK F1 2
GM6 OAL F1 2
GM6 CAB F1 2
GM6 NBB F1 3
GM6 CAY F1 3
GM6 OAZ F1 3
GM6 CAN F1 3
GM6 CAR F2 1
GM6 CAQ F2 1
GM6 CAP F2 1
GM6 CAT F2 1
GM6 NAU F2 1
GM6 CAS F2 1
GM6 CAW F2 1
GM6 CAX F2 1
GM6 CAV F2 1
GM6 OAZ F3 1
GM6 CAY F3 1
GM6 CAN F3 1
GM6 NAM F3 1
GM6 CAR F4 1
GM6 CAV F4 1
GM6 CAX F4 1
GM6 CAW F4 1
GM6 CAS F4 1
GM6 CAQ F4 1
GM6 CAT F5 1
GM6 CAP F5 1
GM6 CAQ F5 1
GM6 CAR F5 1
GM6 NAU F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GM6
_pdbe_chem_comp_rdkit_properties.exactmw 388.211
_pdbe_chem_comp_rdkit_properties.amw 388.468
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 56
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.450
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 203.242
_pdbe_chem_comp_rdkit_properties.tpsa 123.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.016
_pdbe_chem_comp_rdkit_properties.CrippenMR 103.019
_pdbe_chem_comp_rdkit_properties.chi0v 13.422
_pdbe_chem_comp_rdkit_properties.chi1v 6.860
_pdbe_chem_comp_rdkit_properties.chi2v 2.737
_pdbe_chem_comp_rdkit_properties.chi3v 2.737
_pdbe_chem_comp_rdkit_properties.chi4v 1.680
_pdbe_chem_comp_rdkit_properties.chi0n 41.422
_pdbe_chem_comp_rdkit_properties.chi1n 20.557
_pdbe_chem_comp_rdkit_properties.chi2n 2.737
_pdbe_chem_comp_rdkit_properties.chi3n 2.737
_pdbe_chem_comp_rdkit_properties.chi4n 1.680
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.870
_pdbe_chem_comp_rdkit_properties.kappa1 4.994
_pdbe_chem_comp_rdkit_properties.kappa2 9.889
_pdbe_chem_comp_rdkit_properties.kappa3 5.562
_pdbe_chem_comp_rdkit_properties.Phi 1.764
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GM6 UniChem DrugBank DB02255
GM6 UniChem 'Guide to Pharmacology' 7409
GM6 UniChem 'PubChem DOTF' 12014779
GM6 UniChem ChEBI 137236
GM6 UniChem ZINC ZINC000003780014
GM6 UniChem fdasrs I0403ML141
GM6 UniChem Selleck gm6001
GM6 UniChem 'PubChem TPHARMA' 14902905
GM6 UniChem LINCS LSM-3143
GM6 UniChem ACTor 142880-36-2
GM6 UniChem Nikkaji J601.478J
GM6 UniChem BindingDb 234334
GM6 UniChem BindingDb 50062351
GM6 UniChem 'EPA CompTox Dashboard' DTXSID0046353
GM6 UniChem BRENDA 107490
GM6 UniChem BRENDA 1952
GM6 UniChem BRENDA 19656
GM6 UniChem BRENDA 240075
GM6 UniChem BRENDA 59620
GM6 UniChem BRENDA 6175
GM6 UniChem BRENDA 81829
GM6 UniChem ChemicalBook CB11178927
GM6 UniChem rxnorm ILOMASTAT
GM6 UniChem MedChemExpress HY-15768
GM6 UniChem 'Probes And Drugs' PD008100
GM6 UniChem eMolecules 1934771
GM6 UniChem SureChEMBL SCHEMBL35303
GM6 UniChem 'PubChem TPHARMA' 14878422
GM6 UniChem PubChem 132519
GM6 UniChem Mcule MCULE-7915031626
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GM6 OAG -0.308 1.077 3.519 ETKDGv3 1
GM6 NAF -1.072 1.350 2.435 ETKDGv3 2
GM6 CAD -2.335 0.704 2.253 ETKDGv3 3
GM6 OAE -2.750 -0.117 3.115 ETKDGv3 4
GM6 CAC -3.150 0.956 1.015 ETKDGv3 5
GM6 CAB -2.843 -0.080 -0.088 ETKDGv3 6
GM6 CAK -1.388 0.009 -0.489 ETKDGv3 7
GM6 OAL -1.003 0.930 -1.261 ETKDGv3 8
GM6 NAM -0.432 -0.902 0.075 ETKDGv3 9
GM6 CAN 1.010 -0.726 -0.117 ETKDGv3 10
GM6 CAY 1.400 -1.163 -1.505 ETKDGv3 11
GM6 OAZ 0.913 -2.223 -1.988 ETKDGv3 12
GM6 NBB 2.362 -0.408 -2.252 ETKDGv3 13
GM6 CBA 2.812 -0.831 -3.572 ETKDGv3 14
GM6 CAO 1.791 -1.523 0.944 ETKDGv3 15
GM6 CAP 3.259 -1.217 0.891 ETKDGv3 16
GM6 CAT 4.193 -1.945 0.276 ETKDGv3 17
GM6 NAU 5.459 -1.286 0.331 ETKDGv3 18
GM6 CAR 5.186 -0.077 1.022 ETKDGv3 19
GM6 CAV 6.126 1.018 1.315 ETKDGv3 20
GM6 CAX 5.654 2.108 1.948 ETKDGv3 21
GM6 CAW 4.214 2.194 2.332 ETKDGv3 22
GM6 CAS 3.372 1.183 2.052 ETKDGv3 23
GM6 CAQ 3.914 -0.001 1.364 ETKDGv3 24
GM6 CAA -3.749 0.106 -1.330 ETKDGv3 25
GM6 CAH -5.245 -0.233 -1.062 ETKDGv3 26
GM6 CAJ -6.109 1.038 -1.044 ETKDGv3 27
GM6 CAI -5.788 -1.212 -2.112 ETKDGv3 28
GM6 HAG -0.568 1.758 4.191 ETKDGv3 29
GM6 HAF -0.710 2.009 1.710 ETKDGv3 30
GM6 HAC1 -2.955 1.985 0.640 ETKDGv3 31
GM6 HAC2 -4.221 0.904 1.300 ETKDGv3 32
GM6 HAB -3.033 -1.098 0.318 ETKDGv3 33
GM6 HAM -0.779 -1.675 0.688 ETKDGv3 34
GM6 HAN 1.251 0.352 0.017 ETKDGv3 35
GM6 HBB 2.772 0.458 -1.836 ETKDGv3 36
GM6 HBA1 3.562 -0.112 -3.963 ETKDGv3 37
GM6 HBA2 1.949 -0.866 -4.270 ETKDGv3 38
GM6 HBA3 3.279 -1.836 -3.506 ETKDGv3 39
GM6 HAO1 1.415 -1.252 1.954 ETKDGv3 40
GM6 HAO2 1.623 -2.615 0.806 ETKDGv3 41
GM6 HAT 4.019 -2.884 -0.233 ETKDGv3 42
GM6 HAU 6.360 -1.593 -0.097 ETKDGv3 43
GM6 HAV 7.167 0.948 1.027 ETKDGv3 44
GM6 HAX 6.319 2.930 2.177 ETKDGv3 45
GM6 HAW 3.847 3.078 2.837 ETKDGv3 46
GM6 HAS 2.326 1.240 2.321 ETKDGv3 47
GM6 HAA1 -3.355 -0.556 -2.134 ETKDGv3 48
GM6 HAA2 -3.643 1.144 -1.717 ETKDGv3 49
GM6 HAH -5.355 -0.731 -0.073 ETKDGv3 50
GM6 HAJ1 -6.100 1.530 -2.040 ETKDGv3 51
GM6 HAJ2 -5.731 1.759 -0.291 ETKDGv3 52
GM6 HAJ3 -7.158 0.784 -0.781 ETKDGv3 53
GM6 HAI1 -5.716 -0.774 -3.131 ETKDGv3 54
GM6 HAI2 -5.208 -2.159 -2.085 ETKDGv3 55
GM6 HAI3 -6.852 -1.454 -1.900 ETKDGv3 56
#