data_GLZ
#
_chem_comp.id GLZ
_chem_comp.name AMINO-ACETALDEHYDE
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C2 H5 N O'
_chem_comp.mon_nstd_parent_comp_id GLY
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 59.067
_chem_comp.one_letter_code G
_chem_comp.three_letter_code GLZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CMX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GLZ N N N 0 1 N N N Y Y N 49.735 44.909 4.254 -0.372 0.031 1.674 N GLZ 1
GLZ CA CA C 0 1 N N N Y N N 48.596 44.282 3.645 0.597 0.024 0.571 CA GLZ 2
GLZ C C C 0 1 N N N Y N Y 48.811 42.785 3.449 -0.080 -0.441 -0.691 C GLZ 3
GLZ O O O 0 1 N N N Y N Y 47.801 42.194 3.020 -0.122 0.282 -1.656 O GLZ 4
GLZ H H H 0 1 N N N Y Y N 49.591 45.910 4.385 -1.055 0.740 1.455 H GLZ 5
GLZ H2 H2 H 0 1 N Y N Y Y N 50.587 44.722 3.726 0.122 0.348 2.494 H2 GLZ 6
GLZ HA1 HA1 H 0 1 N N N Y N N 47.663 44.486 4.221 0.986 1.032 0.424 HA1 GLZ 7
GLZ HA2 HA2 H 0 1 N N N Y N N 48.321 44.781 2.686 1.418 -0.649 0.813 HA2 GLZ 8
GLZ H1 HXT H 0 1 N Y N Y N Y 49.687 42.136 3.615 -0.528 -1.423 -0.732 HXT GLZ 9
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GLZ N CA SING N N 1
GLZ N H SING N N 2
GLZ N H2 SING N N 3
GLZ CA C SING N N 4
GLZ CA HA1 SING N N 5
GLZ CA HA2 SING N N 6
GLZ C O DOUB N N 7
GLZ C H1 SING N N 8
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GLZ SMILES ACDLabs 10.04 O=CCN
GLZ SMILES_CANONICAL CACTVS 3.341 NCC=O
GLZ SMILES CACTVS 3.341 NCC=O
GLZ SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C(C=O)N'
GLZ SMILES 'OpenEye OEToolkits' 1.5.0 'C(C=O)N'
GLZ InChI InChI 1.03 InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
GLZ InChIKey InChI 1.03 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GLZ 'SYSTEMATIC NAME' ACDLabs 10.04 aminoacetaldehyde
GLZ 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 2-aminoethanal
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GLZ 'Create component' 1999-07-08 RCSB
GLZ 'Modify descriptor' 2011-06-04 RCSB
GLZ 'Modify backbone' 2023-11-03 PDBE
GLZ 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id GLZ
_pdbx_chem_comp_pcm.modified_residue_id GLY
_pdbx_chem_comp_pcm.type Dehydroxylation
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position C-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GLZ N N 7.702 -0.840 1
GLZ CA C 6.404 -0.090 2
GLZ C C 5.104 -0.840 3
GLZ O O 3.805 -0.090 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GLZ N CA SINGLE NONE 1
GLZ CA C SINGLE NONE 2
GLZ C O DOUBLE NONE 3
#
_pdbe_chem_comp_substructure.comp_id GLZ
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GLZ O F1 1
GLZ C F1 1
GLZ CA F1 1
GLZ N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GLZ
_pdbe_chem_comp_rdkit_properties.exactmw 59.037
_pdbe_chem_comp_rdkit_properties.amw 59.068
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 9
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 31.747
_pdbe_chem_comp_rdkit_properties.tpsa 43.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.856
_pdbe_chem_comp_rdkit_properties.CrippenMR 15.118
_pdbe_chem_comp_rdkit_properties.chi0v 1.855
_pdbe_chem_comp_rdkit_properties.chi1v 0.678
_pdbe_chem_comp_rdkit_properties.chi2v 0.046
_pdbe_chem_comp_rdkit_properties.chi3v 0.046
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 6.855
_pdbe_chem_comp_rdkit_properties.chi1n 3.072
_pdbe_chem_comp_rdkit_properties.chi2n 0.046
_pdbe_chem_comp_rdkit_properties.chi3n 0.046
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.370
_pdbe_chem_comp_rdkit_properties.kappa1 0.431
_pdbe_chem_comp_rdkit_properties.kappa2 2.630
_pdbe_chem_comp_rdkit_properties.kappa3 1.630
_pdbe_chem_comp_rdkit_properties.Phi 0.284
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GLZ UniChem 'KEGG LIGAND' C06735
GLZ UniChem ChEBI 17628
GLZ UniChem ZINC ZINC000008220689
GLZ UniChem fdasrs 75G7022MOD
GLZ UniChem SureChEMBL SCHEMBL37921
GLZ UniChem HMDB HMDB0248308
GLZ UniChem 'PubChem TPHARMA' 125301366
GLZ UniChem Nikkaji J24.178D
GLZ UniChem 'EPA CompTox Dashboard' DTXSID50215728
GLZ UniChem MetaboLights MTBLC17628
GLZ UniChem BRENDA 108049
GLZ UniChem BRENDA 10986
GLZ UniChem BRENDA 202574
GLZ UniChem ChemicalBook CB9482380
GLZ UniChem PubChem 363
GLZ UniChem ACTor 6542-88-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GLZ N -1.110 0.602 0.068 ETKDGv3 1
GLZ CA -0.121 -0.449 -0.148 ETKDGv3 2
GLZ C 1.259 0.131 -0.130 ETKDGv3 3
GLZ O 1.593 0.956 -0.966 ETKDGv3 4
GLZ H -1.024 0.933 1.057 ETKDGv3 5
GLZ H2 -2.058 0.169 -0.018 ETKDGv3 6
GLZ HA1 -0.299 -0.931 -1.133 ETKDGv3 7
GLZ HA2 -0.211 -1.223 0.645 ETKDGv3 8
GLZ H1 1.972 -0.188 0.624 ETKDGv3 9
#