data_GLG
#
_chem_comp.id GLG
_chem_comp.name "ALPHA-D-GLUCOPYRANOSYL-2-CARBOXYLIC ACID AMIDE"
_chem_comp.type D-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C7 H13 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-08-08
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.181
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GLG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GG8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GLG C1 C1 C 0 1 N N S N N N 34.098 22.660 27.781 -1.075 -0.880 0.491 C1 GLG 1
GLG C2 C2 C 0 1 N N R N N N 34.206 23.031 26.243 0.061 -0.879 1.514 C2 GLG 2
GLG C3 C3 C 0 1 N N S N N N 32.912 22.519 25.495 1.069 0.211 1.141 C3 GLG 3
GLG C4 C4 C 0 1 N N S N N N 32.555 21.051 25.866 1.503 0.000 -0.313 C4 GLG 4
GLG C5 C5 C 0 1 N N R N N N 32.437 20.907 27.455 0.257 -0.066 -1.199 C5 GLG 5
GLG C6 C6 C 0 1 N N N N N N 32.156 19.447 27.813 0.682 -0.244 -2.658 C6 GLG 6
GLG O2 O2 O 0 1 N N N N N N 34.346 24.435 26.128 -0.466 -0.616 2.816 O2 GLG 7
GLG O3 O3 O 0 1 N N N N N N 33.105 22.553 24.083 2.210 0.129 1.998 O3 GLG 8
GLG O4 O4 O 0 1 N N N N N N 31.360 20.632 25.225 2.328 1.089 -0.730 O4 GLG 9
GLG O5 O5 O 0 1 N N N N N N 33.704 21.294 28.045 -0.556 -1.169 -0.805 O5 GLG 10
GLG O6 O6 O 0 1 N N N N N N 33.261 18.658 27.381 -0.478 -0.300 -3.489 O6 GLG 11
GLG N N N 0 1 N N N N N N 31.899 23.773 28.642 -2.171 0.998 -0.687 N GLG 12
GLG C7 C7 C 0 1 N N N N N N 33.221 23.599 28.634 -1.737 0.473 0.475 C7 GLG 13
GLG O7 O7 O 0 1 N N N N N N 33.957 24.136 29.454 -1.879 1.090 1.510 O7 GLG 14
GLG H1 H1 H 0 1 N N N N N N 35.156 22.799 28.101 -1.809 -1.638 0.765 H1 GLG 15
GLG H2 H2 H 0 1 N N N N N N 35.093 22.542 25.775 0.556 -1.850 1.511 H2 GLG 16
GLG H3 H3 H 0 1 N N N N N N 32.086 23.197 25.812 0.604 1.191 1.246 H3 GLG 17
GLG H4 H4 H 0 1 N N N N N N 33.373 20.385 25.504 2.060 -0.932 -0.396 H4 GLG 18
GLG H5 H5 H 0 1 N N N N N N 31.611 21.553 27.835 -0.310 0.858 -1.097 H5 GLG 19
GLG H61 H61 H 0 1 N N N N N N 31.926 19.307 28.895 1.305 0.598 -2.961 H61 GLG 20
GLG H62 H62 H 0 1 N N N N N N 31.184 19.084 27.403 1.248 -1.169 -2.762 H62 GLG 21
GLG HO2 HO2 H 0 1 N N N N N N 34.410 24.657 25.206 -1.095 -1.325 3.011 HO2 GLG 22
GLG HO3 HO3 H 0 1 N N N N N N 32.326 22.245 23.633 1.892 0.267 2.901 HO3 GLG 23
GLG HO4 HO4 H 0 1 N N N N N N 31.142 19.735 25.451 3.100 1.095 -0.147 HO4 GLG 24
GLG HO6 HO6 H 0 1 N N N N N N 33.086 17.751 27.603 -0.167 -0.412 -4.398 HO6 GLG 25
GLG HN1 HN1 H 0 1 N N N N N N 31.286 23.326 27.959 -2.597 1.870 -0.697 HN1 GLG 26
GLG HN2 HN2 H 0 1 N N N N N N 31.319 24.394 29.206 -2.053 0.506 -1.515 HN2 GLG 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GLG C1 C2 SING N N 1
GLG C1 O5 SING N N 2
GLG C1 C7 SING N N 3
GLG C1 H1 SING N N 4
GLG C2 C3 SING N N 5
GLG C2 O2 SING N N 6
GLG C2 H2 SING N N 7
GLG C3 C4 SING N N 8
GLG C3 O3 SING N N 9
GLG C3 H3 SING N N 10
GLG C4 C5 SING N N 11
GLG C4 O4 SING N N 12
GLG C4 H4 SING N N 13
GLG C5 C6 SING N N 14
GLG C5 O5 SING N N 15
GLG C5 H5 SING N N 16
GLG C6 O6 SING N N 17
GLG C6 H61 SING N N 18
GLG C6 H62 SING N N 19
GLG O2 HO2 SING N N 20
GLG O3 HO3 SING N N 21
GLG O4 HO4 SING N N 22
GLG O6 HO6 SING N N 23
GLG N C7 SING N N 24
GLG N HN1 SING N N 25
GLG N HN2 SING N N 26
GLG C7 O7 DOUB N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GLG SMILES ACDLabs 10.04 O=C(N)C1OC(CO)C(O)C(O)C1O
GLG SMILES_CANONICAL CACTVS 3.341 NC(=O)[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O
GLG SMILES CACTVS 3.341 NC(=O)[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O
GLG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)C(=O)N)O)O)O)O
GLG SMILES "OpenEye OEToolkits" 1.5.0 C(C1C(C(C(C(O1)C(=O)N)O)O)O)O
GLG InChI InChI 1.03 InChI=1S/C7H13NO6/c8-7(13)6-5(12)4(11)3(10)2(1-9)14-6/h2-6,9-12H,1H2,(H2,8,13)/t2-,3-,4+,5-,6+/m1/s1
GLG InChIKey InChI 1.03 UKWLGCFJAVEFPE-DVKNGEFBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GLG "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-carboxamide (non-preferred name)"
GLG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxane-2-carboxamide
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GLG "CARBOHYDRATE ISOMER" D PDB ?
GLG "CARBOHYDRATE RING" pyranose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GLG 'Create component' 2000-08-08 EBI
GLG 'Modify descriptor' 2011-06-04 RCSB
GLG 'Other modification' 2020-07-03 RCSB
GLG 'Modify linking type' 2020-07-17 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id GLG
_pdbe_chem_comp_drugbank_details.drugbank_id DB02720
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'alpha-D-glucopyranosyl-2-carboxylic acid amide'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 58825-13-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id GLG
_pdbe_chem_comp_synonyms.name 'alpha-D-glucopyranosyl-2-carboxylic acid amide'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id GLG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02720
_pdbe_chem_comp_drugbank_classification.parent 'C-glycosyl compounds'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id GLG
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02720
_pdbe_chem_comp_drugbank_targets.name 'Glycogen phosphorylase, muscle form'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P11217
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GLG C1 C 7.702 -0.750 1
GLG C2 C 7.702 0.750 2
GLG C3 C 6.404 1.500 3
GLG C4 C 5.104 0.750 4
GLG C5 C 5.104 -0.750 5
GLG C6 C 3.805 -1.500 6
GLG O2 O 9.002 1.500 7
GLG O3 O 6.404 3.000 8
GLG O4 O 3.805 1.500 9
GLG O5 O 6.404 -1.500 10
GLG O6 O 3.805 -3.000 11
GLG N N 10.301 -0.750 12
GLG C7 C 9.002 -1.500 13
GLG O7 O 9.002 -3.000 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GLG C1 C2 SINGLE NONE 1
GLG C1 O5 SINGLE NONE 2
GLG C1 C7 SINGLE BEGINWEDGE 3
GLG C2 C3 SINGLE NONE 4
GLG C2 O2 SINGLE BEGINWEDGE 5
GLG C3 C4 SINGLE NONE 6
GLG C3 O3 SINGLE BEGINDASH 7
GLG C4 C5 SINGLE NONE 8
GLG C4 O4 SINGLE BEGINWEDGE 9
GLG C5 C6 SINGLE BEGINDASH 10
GLG C5 O5 SINGLE NONE 11
GLG C6 O6 SINGLE NONE 12
GLG N C7 SINGLE NONE 13
GLG C7 O7 DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GLG MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
GLG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GLG C1 S1 1
GLG C2 S1 1
GLG C3 S1 1
GLG C4 S1 1
GLG C5 S1 1
GLG O5 S1 1
GLG N F1 1
GLG C7 F1 1
GLG O7 F1 1
GLG C1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GLG
_pdbe_chem_comp_rdkit_properties.exactmw 207.074
_pdbe_chem_comp_rdkit_properties.amw 207.182
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 98.442
_pdbe_chem_comp_rdkit_properties.tpsa 133.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.686
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.962
_pdbe_chem_comp_rdkit_properties.chi0v 6.397
_pdbe_chem_comp_rdkit_properties.chi1v 3.152
_pdbe_chem_comp_rdkit_properties.chi2v 1.316
_pdbe_chem_comp_rdkit_properties.chi3v 1.316
_pdbe_chem_comp_rdkit_properties.chi4v 0.712
_pdbe_chem_comp_rdkit_properties.chi0n 19.397
_pdbe_chem_comp_rdkit_properties.chi1n 9.180
_pdbe_chem_comp_rdkit_properties.chi2n 1.316
_pdbe_chem_comp_rdkit_properties.chi3n 1.316
_pdbe_chem_comp_rdkit_properties.chi4n 0.712
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.730
_pdbe_chem_comp_rdkit_properties.kappa1 2.895
_pdbe_chem_comp_rdkit_properties.kappa2 4.197
_pdbe_chem_comp_rdkit_properties.kappa3 1.861
_pdbe_chem_comp_rdkit_properties.Phi 0.868
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GLG UniChem DrugBank DB02720
GLG UniChem SureChEMBL SCHEMBL5961308
GLG UniChem PubChem 445825
GLG UniChem 'Probes And Drugs' PD060017
GLG UniChem BindingDb 50306562
GLG UniChem Nikkaji J912.201J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GLG C1 1.328 -0.177 0.256 ETKDGv3 1
GLG C2 0.684 -1.282 -0.609 ETKDGv3 2
GLG C3 -0.711 -1.644 -0.047 ETKDGv3 3
GLG C4 -1.339 -0.464 0.738 ETKDGv3 4
GLG C5 -0.822 0.892 0.190 ETKDGv3 5
GLG C6 -1.460 2.064 0.953 ETKDGv3 6
GLG O2 0.570 -0.833 -1.937 ETKDGv3 7
GLG O3 -0.592 -2.760 0.799 ETKDGv3 8
GLG O4 -2.739 -0.520 0.630 ETKDGv3 9
GLG O5 0.596 1.042 0.249 ETKDGv3 10
GLG O6 -0.999 3.288 0.447 ETKDGv3 11
GLG N 2.993 0.964 -1.304 ETKDGv3 12
GLG C7 2.736 0.090 -0.203 ETKDGv3 13
GLG O7 3.698 -0.493 0.365 ETKDGv3 14
GLG H1 1.387 -0.539 1.308 ETKDGv3 15
GLG H2 1.342 -2.184 -0.581 ETKDGv3 16
GLG H3 -1.372 -1.908 -0.906 ETKDGv3 17
GLG H4 -1.042 -0.531 1.812 ETKDGv3 18
GLG H5 -1.136 0.978 -0.875 ETKDGv3 19
GLG H61 -1.182 2.000 2.027 ETKDGv3 20
GLG H62 -2.571 2.023 0.886 ETKDGv3 21
GLG HO2 0.457 -1.639 -2.505 ETKDGv3 22
GLG HO3 -1.499 -3.152 0.890 ETKDGv3 23
GLG HO4 -3.049 -1.220 1.263 ETKDGv3 24
GLG HO6 -1.465 3.432 -0.417 ETKDGv3 25
GLG HN1 3.973 1.132 -1.623 ETKDGv3 26
GLG HN2 2.212 1.441 -1.805 ETKDGv3 27
#